Q97ZW8 - SULSO - GREMLIN Contacts

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Q97ZW8 - Uncharacterized protein

UniProt:	Q97ZW8	Sequences: MFSSSLTSYVYTKPIILIFSQNLCKMIKIGTCGFTRKHFNYFDVLEVQETFYNFLSEERLNKLKELSIRNKVELTIKANQIITHEYNRITYKRFKKIIGDVKNYGYFRPTKEVMQALEITLNEAKFLNSRIIIFQTPPSFAPNNENIKNLKDFFSILDKSFIYGWEPRGEWNQNHEVLLKIFSQIDVIHVVDPFKNKSVDDKQIRYFRLHGLGSSEVNYRYKYTKADLEKLKEYVLSERKELIYVLFNNVYSFDDALSFKRMIEG	Download Alignment We filter this alignment to remove sites that have many gaps before running GREMLIN. Date: 2015_01
Length:	265 (210)
Sequences:	2640 (1889)
Seq/√Len:	130.4

ECOLI - YECE
BACSU - YUNF
SULSO - Q97ZW8 Q97ZT4

GREMLIN Results:

Legend: The darker and larger the blue dots, the higher coevolution strength.

Residue pairs sorted by coevolution strength:

i	j	Sco	Prob
44_V	246_L	4.370	1.00
225_K	258_S	4.315	1.00
229_E	262_M	3.896	1.00
67_S	128_N	3.043	1.00
167_P	178_L	2.615	1.00
78_A	134_F	2.543	1.00
83_T	134_F	2.421	1.00
41_Y	257_L	2.412	1.00
151_K	185_I	2.393	1.00
62_K	66_L	2.382	1.00
57_E	61_N	2.306	1.00
154_F	187_V	2.105	1.00
164_G	190_V	2.088	1.00
142_P	171_W	2.028	1.00
174_N	177_V	1.994	1.00
155_S	185_I	1.972	1.00
114_M	118_E	1.933	1.00
67_S	74_L	1.909	1.00
43_D	260_K	1.893	1.00
50_T	60_L	1.890	1.00
110_T	156_I	1.888	1.00
28_K	43_D	1.884	1.00
75_T	246_L	1.850	1.00
151_K	184_Q	1.831	1.00
209_L	245_V	1.831	1.00
258_S	261_R	1.792	1.00
55_L	60_L	1.755	1.00
232_K	236_L	1.751	1.00
228_L	262_M	1.738	1.00
151_K	155_S	1.702	1.00
203_Q	241_E	1.685	1.00
157_L	163_Y	1.649	1.00
207_F	231_L	1.616	1.00
204_I	244_Y	1.610	1.00
249_N	252_S	1.598	1.00
36_R	66_L	1.598	1.00
28_K	73_E	1.597	1.00
32_C	246_L	1.592	1.00
31_T	38_H	1.591	1.00
235_V	245_V	1.582	1.00
134_F	163_Y	1.545	1.00
38_H	45_L	1.538	1.00
56_S	59_R	1.503	1.00
78_A	132_I	1.499	1.00
142_P	178_L	1.482	1.00
136_T	150_L	1.474	1.00
205_R	243_I	1.463	1.00
73_E	244_Y	1.437	1.00
165_W	182_F	1.421	1.00
181_I	185_I	1.391	1.00
61_N	65_E	1.369	1.00
153_F	157_L	1.365	1.00
222_K	255_D	1.365	1.00
130_R	244_Y	1.346	1.00
188_I	204_I	1.323	1.00
73_E	130_R	1.309	1.00
55_L	119_I	1.298	1.00
224_T	227_D	1.294	1.00
29_I	260_K	1.287	1.00
235_V	259_F	1.285	1.00
180_K	184_Q	1.252	1.00
222_K	254_D	1.251	1.00
62_K	65_E	1.250	1.00
47_V	59_R	1.248	1.00
86_Y	90_T	1.246	1.00
188_I	202_K	1.237	1.00
68_I	128_N	1.237	1.00
164_G	188_I	1.226	1.00
26_M	242_L	1.216	1.00
64_K	125_K	1.213	1.00
218_N	221_Y	1.211	0.99
86_Y	112_E	1.207	0.99
255_D	258_S	1.198	0.99
111_K	115_Q	1.196	0.99
152_D	155_S	1.189	0.99
81_I	112_E	1.180	0.99
75_T	131_I	1.178	0.99
51_F	84_H	1.165	0.99
58_E	61_N	1.164	0.99
148_K	152_D	1.163	0.99
29_I	259_F	1.160	0.99
60_L	123_E	1.147	0.99
64_K	128_N	1.140	0.99
60_L	120_T	1.135	0.99
131_I	244_Y	1.129	0.99
210_H	249_N	1.128	0.99
186_D	203_Q	1.118	0.99
141_A	169_G	1.116	0.99
179_L	183_S	1.107	0.99
150_L	154_F	1.107	0.99
82_I	113_V	1.092	0.99
39_F	67_S	1.082	0.99
151_K	181_I	1.054	0.99
176_E	180_K	1.054	0.99
50_T	116_A	1.049	0.99
247_F	259_F	1.048	0.99
47_V	74_L	1.048	0.99
210_H	255_D	1.033	0.98
37_K	41_Y	1.029	0.98
58_E	62_K	1.028	0.98
115_Q	119_I	1.024	0.98
179_L	189_H	1.024	0.98
34_F	63_L	1.020	0.98
230_K	234_Y	1.018	0.98
131_I	204_I	1.009	0.98
150_L	158_D	1.008	0.98
247_F	255_D	1.007	0.98
72_V	128_N	1.004	0.98
87_N	139_S	0.998	0.98
64_K	124_A	0.997	0.98
111_K	114_M	0.997	0.98
223_Y	247_F	0.985	0.98
162_I	203_Q	0.984	0.98
232_K	259_F	0.983	0.98
36_R	40_N	0.980	0.98
34_F	47_V	0.974	0.98
37_K	40_N	0.973	0.98
129_S	132_I	0.966	0.97
209_L	248_N	0.956	0.97
81_I	86_Y	0.954	0.97
149_N	153_F	0.947	0.97
28_K	242_L	0.946	0.97
150_L	153_F	0.946	0.97
54_F	119_I	0.936	0.97
78_A	113_V	0.929	0.97
115_Q	118_E	0.929	0.97
89_I	149_N	0.928	0.97
84_H	137_P	0.927	0.97
28_K	244_Y	0.923	0.97
200_D	205_R	0.921	0.97
90_T	112_E	0.912	0.96
76_I	120_T	0.905	0.96
117_L	132_I	0.905	0.96
136_T	153_F	0.901	0.96
60_L	119_I	0.897	0.96
131_I	206_Y	0.886	0.96
153_F	158_D	0.884	0.96
212_L	227_D	0.884	0.96
150_L	165_W	0.876	0.96
75_T	206_Y	0.875	0.96
110_T	114_M	0.874	0.95
131_I	164_G	0.873	0.95
124_A	161_F	0.871	0.95
68_I	72_V	0.867	0.95
112_E	115_Q	0.864	0.95
53_N	56_S	0.861	0.95
29_I	256_A	0.857	0.95
79_N	116_A	0.850	0.95
225_K	262_M	0.848	0.95
210_H	248_N	0.847	0.95
33_G	206_Y	0.846	0.95
121_L	125_K	0.843	0.95
205_R	240_K	0.841	0.94
211_G	219_Y	0.840	0.94
81_I	85_E	0.840	0.94
29_I	263_I	0.839	0.94
180_K	183_S	0.839	0.94
193_P	197_K	0.839	0.94
219_Y	248_N	0.838	0.94
213_G	218_N	0.838	0.94
210_H	250_V	0.833	0.94
51_F	137_P	0.826	0.94
57_E	118_E	0.825	0.94
194_F	198_S	0.823	0.94
192_D	212_L	0.821	0.94
57_E	119_I	0.810	0.93
115_Q	120_T	0.809	0.93
76_I	123_E	0.807	0.93
173_Q	189_H	0.806	0.93
77_K	135_Q	0.805	0.93
140_F	150_L	0.801	0.93
54_F	79_N	0.794	0.93
249_N	255_D	0.794	0.93
165_W	187_V	0.792	0.92
120_T	124_A	0.792	0.92
210_H	219_Y	0.789	0.92
28_K	130_R	0.788	0.92
80_Q	85_E	0.788	0.92
220_R	251_Y	0.788	0.92
193_P	199_V	0.786	0.92
205_R	241_E	0.781	0.92
194_F	211_G	0.780	0.92
121_L	124_A	0.775	0.92
87_N	90_T	0.771	0.91
134_F	165_W	0.769	0.91
257_L	260_K	0.763	0.91
57_E	122_N	0.760	0.91
247_F	256_A	0.760	0.91
231_L	234_Y	0.757	0.91
47_V	76_I	0.754	0.91
32_C	48_Q	0.749	0.90
78_A	83_T	0.746	0.90
225_K	229_E	0.746	0.90
210_H	223_Y	0.744	0.90
212_L	221_Y	0.741	0.90
209_L	231_L	0.737	0.90
80_Q	90_T	0.733	0.89
120_T	123_E	0.732	0.89
191_V	207_F	0.732	0.89
60_L	76_I	0.731	0.89
116_A	120_T	0.730	0.89
211_G	221_Y	0.730	0.89
70_N	128_N	0.728	0.89
144_N	148_K	0.728	0.89
154_F	186_D	0.727	0.89
222_K	258_S	0.725	0.89
170_E	173_Q	0.725	0.89
211_G	249_N	0.723	0.89
114_M	124_A	0.723	0.89
133_I	249_N	0.723	0.89
113_V	117_L	0.718	0.88
162_I	242_L	0.716	0.88
57_E	121_L	0.713	0.88
85_E	90_T	0.709	0.88
167_P	179_L	0.704	0.87
172_N	178_L	0.693	0.86
32_C	248_N	0.690	0.86
213_G	227_D	0.685	0.86
59_R	62_K	0.685	0.86
207_F	235_V	0.676	0.85
223_Y	228_L	0.672	0.85
195_K	199_V	0.671	0.85
77_K	168_R	0.671	0.85
250_V	255_D	0.669	0.84
204_I	242_L	0.664	0.84
182_F	187_V	0.661	0.84
194_F	197_K	0.660	0.84
130_R	242_L	0.660	0.84
212_L	249_N	0.659	0.84
162_I	204_I	0.657	0.83
38_H	42_F	0.656	0.83
48_Q	246_L	0.655	0.83
44_V	244_Y	0.654	0.83
71_K	128_N	0.652	0.83
87_N	140_F	0.650	0.83
229_E	232_K	0.648	0.83
125_K	128_N	0.647	0.82
195_K	198_S	0.645	0.82
152_D	156_I	0.642	0.82
117_L	161_F	0.640	0.82
136_T	140_F	0.638	0.82
163_Y	187_V	0.637	0.81
182_F	189_H	0.637	0.81
37_K	257_L	0.636	0.81
229_E	237_S	0.635	0.81
165_W	178_L	0.632	0.81
135_Q	168_R	0.631	0.81
210_H	247_F	0.627	0.80
83_T	137_P	0.625	0.80
76_I	116_A	0.625	0.80
67_S	72_V	0.623	0.80
235_V	243_I	0.619	0.80
142_P	174_N	0.619	0.80
133_I	190_V	0.619	0.80
45_L	72_V	0.615	0.79
245_V	259_F	0.614	0.79
150_L	157_L	0.612	0.79
136_T	149_N	0.610	0.79
234_Y	237_S	0.606	0.78
50_T	120_T	0.605	0.78
79_N	82_I	0.605	0.78
26_M	29_I	0.603	0.78
194_F	212_L	0.589	0.76
34_F	45_L	0.587	0.76
36_R	41_Y	0.586	0.76
167_P	172_N	0.585	0.76
61_N	122_N	0.583	0.75
47_V	50_T	0.582	0.75
68_I	71_K	0.582	0.75
226_A	230_K	0.581	0.75
245_V	248_N	0.579	0.75
151_K	156_I	0.579	0.75
78_A	163_Y	0.576	0.75
229_E	258_S	0.576	0.75
153_F	163_Y	0.575	0.74
35_T	49_E	0.575	0.74
118_E	121_L	0.569	0.74
133_I	140_F	0.566	0.73
28_K	71_K	0.564	0.73
233_E	237_S	0.562	0.73
140_F	149_N	0.561	0.73
120_T	129_S	0.560	0.73
43_D	71_K	0.560	0.73
148_K	155_S	0.554	0.72
217_V	220_R	0.553	0.72
148_K	151_K	0.553	0.72
38_H	167_P	0.552	0.71
78_A	157_L	0.550	0.71
154_F	159_K	0.549	0.71
233_E	236_L	0.545	0.71
31_T	55_L	0.544	0.70
74_L	128_N	0.543	0.70
154_F	181_I	0.542	0.70
133_I	252_S	0.541	0.70
35_T	53_N	0.539	0.70
212_L	224_T	0.538	0.70
31_T	45_L	0.533	0.69
133_I	210_H	0.533	0.69
140_F	143_N	0.525	0.68
32_C	49_E	0.524	0.68
193_P	196_N	0.524	0.68
55_L	62_K	0.523	0.67
39_F	66_L	0.522	0.67
121_L	160_S	0.519	0.67
46_E	211_G	0.519	0.67
162_I	188_I	0.515	0.66
46_E	63_L	0.514	0.66
51_F	136_T	0.513	0.66
155_S	261_R	0.511	0.66
113_V	153_F	0.510	0.66
138_P	171_W	0.510	0.66
137_P	140_F	0.509	0.65
28_K	44_V	0.505	0.65
193_P	207_F	0.505	0.65
38_H	55_L	0.500	0.64

Legend: The i and j are positions as given in the UniProt sequence. Only predictions with Prob ≥ 0.7 are listed. For all 3L/2 predictions, click on one of the links below.

Sco = ((raw_sco - min_sco)/(avg_sco - min_sco))/2 + 0.5
Prob = P(contact | Sco, seq80/√len)
seq80 = effective number of sequences, after reducing redundancy to 80% identity

Text file of predictions (all 3L/2 predictions)
Generate restraints for ROSETTA Structure Modeling
Upload PDB model overlay contacts on the model

HHsearch Results:

Legend: GREMLIN results (Prob ≥ 0.7) overlaid on top PDB hits. The grey/red filled circles underneath are pdb residue contacts (min distance < 5 Angstroms). The shade of the circles is based on the top 10 (or top 20 if e-value < 1E-20) HHsearch results which uses the overall probability and per-site alignment prob. Inter oligomeric contacts in the pdb are in shades of red.

PDB	Chains	Cov	%	HHΔ
1vpqA	2	0.8264	100	0.241	Contact Map
1vpyA	1	0.8528	100	0.251	Contact Map
4hnoA	1	0.8415	81.6	0.944	Contact Map
3aamA	1	0.8151	75.9	0.947	Contact Map
1qtwA	1	0.8415	74.6	0.947	Contact Map
3kwsA	2	0.8151	70.3	0.949	Contact Map
3wqoA	2	0.8377	64.8	0.951	Contact Map
4ovxA	1	0.8264	62.3	0.951	Contact Map
1k77A	1	0.8264	56.6	0.953	Contact Map
3dx5A	2	0.7887	50.2	0.955	Contact Map

Sequence Conservation (Image Generated using WebLogo v3)

Legend: Color is used to show Hydrophobicity (Blue: Hydrophilic, Green: Neutral and Black: Hydrophobic). Amount of gaps is represented by width.

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