Q97ZT4 - SULSO - GREMLIN Contacts

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Q97ZT4 - Uncharacterized protein

UniProt:	Q97ZT4	Sequences: MKIFVGTSGWTYDWNDDDTLEWYVKNSGLNAVEVNMSFYRYPTRKQVERWSKFKEIRWIVKVNRRITHMKRLKDFQSWKEFQQIVDSLNPDFYLFQLPPTFKRNSENEKRVFQFAEVLKDKMAVEFRDIQWYLKPLNVTCVIVSIDSPIGTYVIKNNDYIYLRLHGRDVWYTYDYSEKELKELADKIISLNPKYVYVFFNNNHWMLDNGRYMLKILTEKS	Download Alignment We filter this alignment to remove sites that have many gaps before running GREMLIN. Date: 2015_01
Length:	220 (214)
Sequences:	2658 (1934)
Seq/√Len:	132.2

ECOLI - YECE
BACSU - YUNF
SULSO - Q97ZT4 Q97ZW8

GREMLIN Results:

Legend: The darker and larger the blue dots, the higher coevolution strength.

Residue pairs sorted by coevolution strength:

i	j	Sco	Prob
31_A	198_F	4.612	1.00
177_E	211_Y	4.539	1.00
181_K	215_I	4.246	1.00
20_L	23_Y	3.197	1.00
17_D	20_L	3.166	1.00
62_V	95_F	2.679	1.00
49_R	53_F	2.629	1.00
28_G	210_R	2.598	1.00
67_T	95_F	2.543	1.00
44_R	48_E	2.415	1.00
51_S	89_N	2.257	1.00
109_K	113_Q	2.192	1.00
103_R	130_Q	2.165	1.00
4_F	30_N	2.145	1.00
109_K	138_V	2.110	1.00
123_A	143_V	2.052	1.00
180_L	215_I	2.023	1.00
17_D	22_W	1.977	1.00
37_S	47_V	1.972	1.00
30_N	213_L	1.935	1.00
59_I	198_F	1.911	1.00
159_Y	196_Y	1.907	1.00
211_Y	214_K	1.902	1.00
164_L	197_V	1.889	1.00
3_I	191_N	1.864	1.00
42_P	47_V	1.813	1.00
184_A	188_I	1.812	1.00
112_F	140_C	1.790	1.00
158_D	193_K	1.780	1.00
201_N	205_M	1.769	1.00
115_A	122_M	1.719	1.00
70_K	74_D	1.717	1.00
18_D	21_E	1.710	1.00
21_E	24_V	1.697	1.00
4_F	57_R	1.672	1.00
162_L	183_L	1.647	1.00
43_T	46_Q	1.645	1.00
97_L	108_E	1.642	1.00
95_F	122_M	1.638	1.00
176_S	179_E	1.619	1.00
101_F	107_N	1.582	1.00
187_I	197_V	1.575	1.00
187_I	212_M	1.574	1.00
7_T	25_K	1.552	1.00
17_D	23_Y	1.552	1.00
113_Q	138_V	1.549	1.00
57_R	196_Y	1.544	1.00
160_I	195_V	1.520	1.00
62_V	93_Y	1.504	1.00
141_V	159_Y	1.497	1.00
47_V	88_L	1.493	1.00
174_D	204_W	1.485	1.00
77_S	80_E	1.481	1.00
51_S	91_D	1.440	1.00
174_D	208_N	1.435	1.00
8_S	198_F	1.431	1.00
48_E	87_S	1.423	1.00
109_K	137_N	1.419	1.00
48_E	52_K	1.417	1.00
49_R	52_K	1.378	1.00
45_K	48_E	1.346	1.00
79_K	83_Q	1.340	1.00
76_Q	114_F	1.331	1.00
170_W	173_Y	1.325	1.00
5_V	213_L	1.319	1.00
25_K	32_V	1.302	1.00
126_F	136_L	1.292	1.00
60_V	88_L	1.288	1.00
44_R	83_Q	1.261	1.00
42_P	84_I	1.247	1.00
141_V	157_N	1.216	1.00
208_N	211_Y	1.206	1.00
102_K	128_D	1.205	1.00
174_D	207_D	1.168	0.99
47_V	85_V	1.165	0.99
18_D	22_W	1.162	0.99
4_F	196_Y	1.160	0.99
34_V	46_Q	1.152	0.99
165_H	201_N	1.150	0.99
71_R	100_T	1.146	0.99
18_D	23_Y	1.140	0.99
123_A	141_V	1.136	0.99
38_F	68_H	1.133	0.99
10_W	34_V	1.131	0.99
65_R	70_K	1.115	0.99
4_F	194_Y	1.111	0.99
66_I	78_W	1.092	0.99
9_G	12_Y	1.092	0.99
34_V	58_W	1.087	0.99
112_F	138_V	1.086	0.99
73_K	107_N	1.070	0.99
5_V	212_M	1.069	0.99
45_K	49_R	1.064	0.99
182_E	186_K	1.049	0.99
167_R	179_E	1.048	0.99
10_W	50_W	1.046	0.99
51_S	88_L	1.043	0.99
82_Q	93_Y	1.039	0.99
12_Y	202_N	1.035	0.98
108_E	124_V	1.029	0.98
80_E	83_Q	1.022	0.98
199_F	208_N	1.016	0.98
110_R	113_Q	1.005	0.98
51_S	90_P	0.998	0.98
110_R	114_F	0.997	0.98
142_I	145_I	0.992	0.98
165_H	208_N	0.986	0.98
55_E	90_P	0.985	0.98
199_F	212_M	0.983	0.98
172_T	203_H	0.975	0.98
5_V	216_L	0.972	0.98
62_V	78_W	0.972	0.98
103_R	136_L	0.970	0.98
177_E	181_K	0.969	0.98
111_V	115_A	0.964	0.98
121_K	158_D	0.955	0.97
175_Y	180_L	0.951	0.97
166_G	171_Y	0.938	0.97
148_P	166_G	0.937	0.97
5_V	209_G	0.933	0.97
184_A	212_M	0.928	0.97
104_N	107_N	0.923	0.97
78_W	82_Q	0.917	0.97
37_S	81_F	0.916	0.97
44_R	84_I	0.916	0.97
24_V	27_S	0.913	0.97
25_K	29_L	0.912	0.97
165_H	171_Y	0.899	0.96
183_L	186_K	0.898	0.96
150_G	156_N	0.897	0.96
177_E	215_I	0.895	0.96
132_Y	142_I	0.894	0.96
155_K	160_I	0.891	0.96
68_H	72_L	0.886	0.96
65_R	69_M	0.880	0.96
59_I	161_Y	0.878	0.96
175_Y	199_F	0.878	0.96
167_R	173_Y	0.872	0.96
171_Y	200_N	0.868	0.95
34_V	60_V	0.868	0.95
106_E	110_R	0.867	0.95
44_R	87_S	0.863	0.95
165_H	200_N	0.862	0.95
101_F	104_N	0.859	0.95
139_T	158_D	0.857	0.95
60_V	81_F	0.857	0.95
71_R	101_F	0.857	0.95
19_T	22_W	0.854	0.95
146_D	167_R	0.853	0.95
183_L	190_L	0.852	0.95
41_Y	84_I	0.850	0.95
47_V	84_I	0.848	0.95
68_H	98_P	0.845	0.95
71_R	74_D	0.838	0.95
9_G	161_Y	0.836	0.94
199_F	209_G	0.836	0.94
201_N	208_N	0.833	0.94
164_L	200_N	0.830	0.94
8_S	35_N	0.829	0.94
108_E	112_F	0.829	0.94
38_F	98_P	0.829	0.94
56_I	91_D	0.827	0.94
97_L	114_F	0.825	0.94
187_I	195_V	0.824	0.94
19_T	23_Y	0.820	0.94
164_L	183_L	0.817	0.94
121_K	194_Y	0.816	0.94
133_L	136_L	0.812	0.94
62_V	67_T	0.808	0.93
41_Y	63_N	0.805	0.93
23_Y	53_F	0.801	0.93
76_Q	79_K	0.797	0.93
111_V	122_M	0.791	0.93
15_N	21_E	0.787	0.93
142_I	147_S	0.786	0.92
40_R	43_T	0.781	0.92
54_K	91_D	0.779	0.92
129_I	132_Y	0.774	0.92
64_R	69_M	0.772	0.92
121_K	159_Y	0.772	0.92
63_N	81_F	0.771	0.92
44_R	86_D	0.765	0.91
17_D	24_V	0.763	0.91
17_D	21_E	0.761	0.91
95_F	124_V	0.759	0.91
166_G	201_N	0.751	0.91
34_V	37_S	0.750	0.91
60_V	85_V	0.749	0.91
113_Q	137_N	0.748	0.90
165_H	202_N	0.744	0.90
86_D	119_K	0.742	0.90
24_V	28_G	0.740	0.90
186_K	189_S	0.738	0.90
3_I	216_L	0.737	0.90
181_K	184_A	0.736	0.90
168_D	179_E	0.735	0.90
160_I	193_K	0.729	0.89
166_G	173_Y	0.718	0.89
126_F	131_W	0.716	0.88
15_N	18_D	0.715	0.88
8_S	200_N	0.713	0.88
8_S	12_Y	0.710	0.88
23_Y	27_S	0.709	0.88
160_I	190_L	0.705	0.88
107_N	111_V	0.700	0.87
94_L	201_N	0.698	0.87
103_R	133_L	0.698	0.87
72_L	111_V	0.695	0.87
159_Y	194_Y	0.695	0.87
197_V	212_M	0.690	0.87
124_V	140_C	0.690	0.87
148_P	179_E	0.690	0.87
67_T	98_P	0.688	0.86
19_T	53_F	0.688	0.86
148_P	200_N	0.684	0.86
165_H	175_Y	0.682	0.86
204_W	207_D	0.681	0.86
162_L	187_I	0.681	0.86
85_V	93_Y	0.675	0.85
61_K	127_R	0.672	0.85
174_D	211_Y	0.671	0.85
8_S	14_W	0.669	0.85
144_S	162_L	0.668	0.85
12_Y	16_D	0.668	0.85
202_N	208_N	0.664	0.84
78_W	114_F	0.658	0.84
30_N	55_E	0.658	0.84
150_G	183_L	0.640	0.82
184_A	216_L	0.637	0.82
46_Q	49_R	0.634	0.82
80_E	84_I	0.633	0.82
148_P	165_H	0.630	0.81
31_A	196_Y	0.628	0.81
83_Q	86_D	0.627	0.81
144_S	190_L	0.622	0.80
61_K	96_Q	0.620	0.80
62_V	122_M	0.614	0.80
22_W	58_W	0.613	0.79
37_S	85_V	0.612	0.79
96_Q	127_R	0.609	0.79
63_N	66_I	0.609	0.79
7_T	32_V	0.606	0.79
47_V	60_V	0.603	0.78
106_E	109_K	0.601	0.78
43_T	84_I	0.599	0.78
76_Q	117_V	0.598	0.78
102_K	129_I	0.596	0.78
188_I	191_N	0.596	0.78
104_N	130_Q	0.595	0.77
197_V	200_N	0.594	0.77
54_K	90_P	0.587	0.76
167_R	201_N	0.586	0.76
58_W	91_D	0.585	0.76
181_K	189_S	0.585	0.76
153_V	186_K	0.582	0.76
134_K	154_I	0.576	0.75
107_N	110_R	0.575	0.75
34_V	47_V	0.573	0.75
101_F	126_F	0.572	0.75
150_G	155_K	0.572	0.75
210_R	213_L	0.572	0.75
71_R	107_N	0.566	0.74
20_L	24_V	0.562	0.73
126_F	132_Y	0.561	0.73
214_K	217_T	0.561	0.73
33_E	50_W	0.561	0.73
111_V	114_F	0.558	0.73
19_T	24_V	0.556	0.73
167_R	176_S	0.555	0.72
121_K	141_V	0.554	0.72
99_P	130_Q	0.552	0.72
178_K	182_E	0.550	0.72
165_H	199_F	0.549	0.72
181_K	211_Y	0.549	0.72
142_I	146_D	0.548	0.71
41_Y	69_M	0.548	0.71
144_S	151_T	0.547	0.71
11_T	40_R	0.547	0.71
90_P	214_K	0.545	0.71
94_L	143_V	0.544	0.71
184_A	215_I	0.543	0.71
181_K	194_Y	0.543	0.71
69_M	74_D	0.542	0.71
29_L	209_G	0.540	0.70
117_V	139_T	0.540	0.70
190_L	195_V	0.539	0.70
177_E	180_L	0.538	0.70
70_K	73_K	0.538	0.70
48_E	51_S	0.538	0.70
85_V	92_F	0.533	0.69
4_F	55_E	0.532	0.69
116_E	119_K	0.531	0.69
25_K	56_I	0.530	0.69
97_L	101_F	0.529	0.69
68_H	71_R	0.526	0.68
142_I	148_P	0.526	0.68
32_V	56_I	0.525	0.68
78_W	111_V	0.521	0.68
55_E	91_D	0.520	0.68
35_N	198_F	0.519	0.67
38_F	97_L	0.518	0.67
173_Y	179_E	0.517	0.67
155_K	193_K	0.516	0.67
167_R	205_M	0.516	0.67
98_P	101_F	0.515	0.67
112_F	116_E	0.515	0.67
200_N	208_N	0.514	0.67
185_D	188_I	0.514	0.67
11_T	36_M	0.514	0.67
116_E	122_M	0.514	0.67
94_L	205_M	0.511	0.66
179_E	208_N	0.509	0.66
176_S	208_N	0.509	0.66
23_Y	28_G	0.508	0.66
180_L	184_A	0.508	0.66
8_S	36_M	0.507	0.66
94_L	165_H	0.504	0.65
122_M	140_C	0.503	0.65
80_E	85_V	0.503	0.65
136_L	142_I	0.502	0.65
144_S	148_P	0.500	0.65

Legend: The i and j are positions as given in the UniProt sequence. Only predictions with Prob ≥ 0.7 are listed. For all 3L/2 predictions, click on one of the links below.

Sco = ((raw_sco - min_sco)/(avg_sco - min_sco))/2 + 0.5
Prob = P(contact | Sco, seq80/√len)
seq80 = effective number of sequences, after reducing redundancy to 80% identity

Text file of predictions (all 3L/2 predictions)
Generate restraints for ROSETTA Structure Modeling
Upload PDB model overlay contacts on the model

HHsearch Results:

Legend: GREMLIN results (Prob ≥ 0.7) overlaid on top PDB hits. The grey/red filled circles underneath are pdb residue contacts (min distance < 5 Angstroms). The shade of the circles is based on the top 10 (or top 20 if e-value < 1E-20) HHsearch results which uses the overall probability and per-site alignment prob. Inter oligomeric contacts in the pdb are in shades of red.

PDB	Chains	Cov	%	HHΔ
1vpqA	2	0.9864	100	0.225	Contact Map
1vpyA	1	0.9591	100	0.246	Contact Map
1yx1A	3	0.9591	95.2	0.916	Contact Map
3cnyA	1	0.9409	93.8	0.922	Contact Map
3l23A	2	0.9818	92.2	0.926	Contact Map
3kwsA	2	0.9818	91.3	0.928	Contact Map
3obeA	1	0.9864	89.9	0.93	Contact Map
4ovxA	1	0.9864	89.9	0.93	Contact Map
3lmzA	2	0.9227	88.2	0.932	Contact Map
3vniA	4	0.9273	87.1	0.933	Contact Map

Sequence Conservation (Image Generated using WebLogo v3)

Legend: Color is used to show Hydrophobicity (Blue: Hydrophilic, Green: Neutral and Black: Hydrophobic). Amount of gaps is represented by width.

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