Q97ZS8 - SULSO - GREMLIN Contacts

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Q97ZS8 - Uncharacterized protein

UniProt:	Q97ZS8	Sequences: MQILVELHPKKKPEKLLNEIKILSSFDGFDIPDSPMGMPSPIPTFVASLIRYSLSLDRKTIIINQRLLDVNELFIRSLSITAKMLDAQIAFTKGDKPKYGKEVGYLSSDEAVNLAKEYGVKSGMMISLRKNENEIMARLDSNADFFLVLRMKDVDQIKYYGPKLIERAIPYLIVMTDKNRELVKSLDQPSFVENEIFSIINSLDSIGVKTVLISSLGDLSFFERLHARL	Download Alignment We filter this alignment to remove sites that have many gaps before running GREMLIN. Date: 2015_01
Length:	229 (207)
Sequences:	3361 (2013)
Seq/√Len:	139.9

ECOLI - METF
BACSU - YITJ
SULSO - Q97ZS8

GREMLIN Results:

Legend: The darker and larger the blue dots, the higher coevolution strength.

Residue pairs sorted by coevolution strength:

i	j	Sco	Prob
139_L	168_A	4.752	1.00
79_S	115_A	3.634	1.00
112_V	124_M	3.459	1.00
136_M	140_D	3.351	1.00
134_E	137_A	3.301	1.00
123_G	145_F	3.280	1.00
197_F	201_N	2.983	1.00
76_R	114_L	2.861	1.00
161_G	170_P	2.784	1.00
105_Y	114_L	2.775	1.00
91_F	115_A	2.680	1.00
126_I	146_F	2.650	1.00
155_D	159_Y	2.622	1.00
48_S	52_Y	2.574	1.00
124_M	146_F	2.417	1.00
112_V	122_S	2.407	1.00
109_D	137_A	2.287	1.00
132_E	164_L	2.243	1.00
116_K	144_D	2.169	1.00
133_N	164_L	2.143	1.00
135_I	146_F	2.136	1.00
51_R	61_I	2.129	1.00
124_M	143_A	1.969	1.00
80_I	118_Y	1.929	1.00
62_I	145_F	1.886	1.00
133_N	137_A	1.844	1.00
150_R	187_D	1.803	1.00
161_G	166_E	1.792	1.00
79_S	120_V	1.770	1.00
49_L	53_S	1.762	1.00
51_R	60_T	1.749	1.00
184_K	200_I	1.736	1.00
154_V	158_K	1.718	1.00
110_E	113_N	1.700	1.00
130_K	133_N	1.676	1.00
71_N	103_V	1.672	1.00
80_I	84_M	1.620	1.00
21_K	53_S	1.609	1.00
121_K	145_F	1.567	1.00
153_D	194_N	1.538	1.00
180_R	184_K	1.460	1.00
48_S	85_L	1.454	1.00
109_D	113_N	1.447	1.00
51_R	88_Q	1.443	1.00
209_K	212_L	1.439	1.00
83_K	88_Q	1.429	1.00
109_D	134_E	1.427	1.00
24_S	55_S	1.412	1.00
121_K	144_D	1.378	1.00
146_F	168_A	1.374	1.00
109_D	141_S	1.360	1.00
182_L	186_L	1.347	1.00
17_L	49_L	1.323	1.00
44_T	82_A	1.311	1.00
185_S	189_P	1.307	1.00
201_N	204_D	1.297	1.00
130_K	134_E	1.296	1.00
136_M	166_E	1.295	1.00
4_L	28_G	1.294	1.00
162_P	165_I	1.284	1.00
62_I	90_A	1.266	1.00
34_S	37_G	1.266	1.00
72_E	104_G	1.254	1.00
210_T	213_I	1.247	1.00
106_L	110_E	1.239	1.00
139_L	146_F	1.232	1.00
113_N	117_E	1.230	1.00
113_N	137_A	1.229	1.00
24_S	59_K	1.227	1.00
40_S	74_F	1.223	1.00
137_A	141_S	1.220	1.00
136_M	164_L	1.206	1.00
10_K	42_I	1.192	1.00
206_I	213_I	1.184	1.00
126_I	148_V	1.183	1.00
184_K	204_D	1.177	1.00
65_Q	78_L	1.164	0.99
31_I	47_A	1.159	0.99
47_A	63_I	1.152	0.99
187_D	195_E	1.127	0.99
63_I	82_A	1.124	0.99
116_K	122_S	1.120	0.99
139_L	167_R	1.112	0.99
5_V	26_F	1.112	0.99
96_K	104_G	1.112	0.99
70_V	74_F	1.097	0.99
207_G	213_I	1.072	0.99
156_Q	194_N	1.061	0.99
202_S	205_S	1.058	0.99
14_E	18_N	1.047	0.99
20_I	50_I	1.040	0.99
107_S	110_E	1.033	0.99
156_Q	159_Y	1.029	0.99
81_T	84_M	1.025	0.99
21_K	24_S	1.017	0.99
18_N	22_I	1.008	0.98
97_P	100_G	1.005	0.98
33_D	70_V	1.003	0.98
190_S	193_E	0.994	0.98
15_K	19_E	0.994	0.98
150_R	186_L	0.989	0.98
13_P	17_L	0.988	0.98
181_E	184_K	0.983	0.98
122_S	144_D	0.976	0.98
73_L	76_R	0.959	0.98
72_E	117_E	0.956	0.98
180_R	203_L	0.949	0.98
136_M	161_G	0.939	0.98
148_V	157_I	0.937	0.98
180_R	204_D	0.937	0.98
79_S	89_I	0.929	0.97
183_V	195_E	0.926	0.97
112_V	143_A	0.926	0.97
177_D	199_I	0.923	0.97
40_S	70_V	0.921	0.97
127_S	131_N	0.914	0.97
7_L	50_I	0.903	0.97
69_D	103_V	0.902	0.97
207_G	210_T	0.902	0.97
62_I	123_G	0.901	0.97
129_R	194_N	0.891	0.97
92_T	125_M	0.889	0.97
208_V	211_V	0.889	0.97
76_R	118_Y	0.886	0.97
71_N	104_G	0.879	0.96
91_F	122_S	0.875	0.96
29_F	59_K	0.874	0.96
7_L	29_F	0.874	0.96
197_F	200_I	0.870	0.96
83_K	119_G	0.864	0.96
32_P	92_T	0.863	0.96
50_I	61_I	0.862	0.96
47_A	87_A	0.860	0.96
76_R	80_I	0.855	0.96
126_I	160_Y	0.854	0.96
137_A	140_D	0.852	0.96
65_Q	89_I	0.852	0.96
70_V	78_L	0.852	0.96
75_I	78_L	0.850	0.96
157_I	172_L	0.849	0.96
186_L	190_S	0.838	0.95
206_I	212_L	0.828	0.95
162_P	167_R	0.826	0.95
67_L	111_A	0.824	0.95
136_M	165_I	0.824	0.95
7_L	20_I	0.800	0.94
148_V	170_P	0.797	0.94
11_K	14_E	0.796	0.94
175_M	185_S	0.795	0.94
7_L	16_L	0.790	0.94
12_K	16_L	0.789	0.94
77_S	81_T	0.786	0.93
15_K	18_N	0.785	0.93
7_L	47_A	0.777	0.93
91_F	112_V	0.776	0.93
18_N	21_K	0.773	0.93
21_K	54_L	0.772	0.93
184_K	188_Q	0.772	0.93
12_K	15_K	0.768	0.93
115_A	122_S	0.766	0.93
34_S	77_S	0.762	0.92
200_I	204_D	0.762	0.92
68_L	96_K	0.761	0.92
68_L	104_G	0.757	0.92
161_G	165_I	0.755	0.92
132_E	136_M	0.755	0.92
73_L	77_S	0.753	0.92
31_I	50_I	0.751	0.92
180_R	200_I	0.750	0.92
30_D	147_L	0.744	0.91
113_N	141_S	0.741	0.91
206_I	210_T	0.738	0.91
70_V	75_I	0.735	0.91
76_R	117_E	0.735	0.91
80_I	119_G	0.730	0.91
71_N	74_F	0.721	0.90
63_I	87_A	0.721	0.90
22_I	25_S	0.720	0.90
74_F	78_L	0.719	0.90
166_E	170_P	0.716	0.90
10_K	13_P	0.713	0.90
8_H	32_P	0.711	0.90
23_L	173_I	0.709	0.89
51_R	85_L	0.709	0.89
55_S	60_T	0.706	0.89
140_D	161_G	0.706	0.89
44_T	81_T	0.705	0.89
89_I	120_V	0.704	0.89
187_D	190_S	0.698	0.89
126_I	135_I	0.694	0.88
17_L	21_K	0.694	0.88
77_S	80_I	0.691	0.88
89_I	115_A	0.688	0.88
155_D	158_K	0.687	0.88
72_E	105_Y	0.686	0.88
177_D	203_L	0.680	0.87
150_R	175_M	0.674	0.87
43_P	63_I	0.673	0.87
138_R	149_L	0.672	0.87
13_P	45_F	0.670	0.87
35_P	38_M	0.670	0.87
179_N	182_L	0.667	0.86
165_I	170_P	0.666	0.86
33_D	66_R	0.665	0.86
199_I	202_S	0.665	0.86
13_P	20_I	0.665	0.86
153_D	198_S	0.660	0.86
28_G	62_I	0.659	0.86
29_F	60_T	0.656	0.85
73_L	103_V	0.655	0.85
28_G	145_F	0.654	0.85
83_K	120_V	0.654	0.85
16_L	19_E	0.652	0.85
179_N	186_L	0.651	0.85
107_S	134_E	0.644	0.84
180_R	207_G	0.644	0.84
153_D	156_Q	0.643	0.84
145_F	171_Y	0.642	0.84
32_P	131_N	0.640	0.84
90_A	125_M	0.639	0.84
182_L	189_P	0.638	0.84
198_S	202_S	0.638	0.84
98_K	101_K	0.636	0.84
148_V	171_Y	0.636	0.84
139_L	166_E	0.635	0.84
44_T	87_A	0.633	0.83
41_P	45_F	0.631	0.83
13_P	46_V	0.628	0.83
82_A	89_I	0.626	0.83
33_D	68_L	0.624	0.82
8_H	193_E	0.624	0.82
112_V	116_K	0.622	0.82
186_L	189_P	0.618	0.82
112_V	141_S	0.617	0.82
135_I	166_E	0.616	0.82
49_L	54_L	0.616	0.82
166_E	169_I	0.612	0.81
135_I	139_L	0.612	0.81
41_P	84_M	0.606	0.81
127_S	190_S	0.598	0.80
45_F	81_T	0.598	0.80
157_I	170_P	0.597	0.80
48_S	87_A	0.597	0.80
37_G	192_V	0.596	0.80
44_T	63_I	0.595	0.79
124_M	135_I	0.593	0.79
155_D	198_S	0.588	0.79
203_L	213_I	0.586	0.78
12_K	69_D	0.585	0.78
79_S	119_G	0.584	0.78
88_Q	115_A	0.582	0.78
114_L	117_E	0.582	0.78
77_S	103_V	0.582	0.78
27_D	171_Y	0.582	0.78
123_G	153_D	0.579	0.78
4_L	8_H	0.575	0.77
19_E	22_I	0.573	0.77
93_K	127_S	0.572	0.77
15_K	22_I	0.571	0.77
136_M	160_Y	0.570	0.76
67_L	70_V	0.570	0.76
173_I	176_T	0.570	0.76
60_T	121_K	0.563	0.76
201_N	205_S	0.562	0.75
95_D	149_L	0.560	0.75
45_F	85_L	0.559	0.75
180_R	205_S	0.559	0.75
75_I	114_L	0.558	0.75
195_E	200_I	0.558	0.75
152_K	172_L	0.556	0.75
75_I	105_Y	0.553	0.74
38_M	193_E	0.552	0.74
52_Y	85_L	0.550	0.74
71_N	106_L	0.544	0.73
187_D	200_I	0.539	0.72
24_S	54_L	0.538	0.72
91_F	111_A	0.537	0.72
165_I	169_I	0.536	0.72
48_S	51_R	0.535	0.72
149_L	173_I	0.534	0.72
10_K	14_E	0.534	0.72
178_K	203_L	0.532	0.71
140_D	164_L	0.531	0.71
41_P	81_T	0.531	0.71
13_P	49_L	0.530	0.71
128_L	196_I	0.529	0.71
29_F	50_I	0.527	0.71
74_F	77_S	0.526	0.71
18_N	24_S	0.525	0.70
4_L	147_L	0.520	0.70
44_T	78_L	0.518	0.69
30_D	192_V	0.517	0.69
108_S	125_M	0.516	0.69
200_I	207_G	0.516	0.69
5_V	23_L	0.516	0.69
25_S	52_Y	0.516	0.69
17_L	53_S	0.514	0.69
31_I	43_P	0.510	0.68
76_R	105_Y	0.509	0.68
29_F	49_L	0.509	0.68
132_E	166_E	0.508	0.68
30_D	62_I	0.507	0.68
39_P	96_K	0.506	0.68
162_P	166_E	0.504	0.67
96_K	99_Y	0.502	0.67
19_E	23_L	0.502	0.67
35_P	97_P	0.502	0.67
50_I	59_K	0.501	0.67
107_S	125_M	0.500	0.67
74_F	104_G	0.500	0.67

Legend: The i and j are positions as given in the UniProt sequence. Only predictions with Prob ≥ 0.7 are listed. For all 3L/2 predictions, click on one of the links below.

Sco = ((raw_sco - min_sco)/(avg_sco - min_sco))/2 + 0.5
Prob = P(contact | Sco, seq80/√len)
seq80 = effective number of sequences, after reducing redundancy to 80% identity

Text file of predictions (all 3L/2 predictions)
Generate restraints for ROSETTA Structure Modeling
Upload PDB model overlay contacts on the model

HHsearch Results:

Legend: GREMLIN results (Prob ≥ 0.7) overlaid on top PDB hits. The grey/red filled circles underneath are pdb residue contacts (min distance < 5 Angstroms). The shade of the circles is based on the top 10 (or top 20 if e-value < 1E-20) HHsearch results which uses the overall probability and per-site alignment prob. Inter oligomeric contacts in the pdb are in shades of red.

PDB	Chains	Cov	%	HHΔ
3aptA	2	0.9738	100	0.218	Contact Map
3fstA	4	0.9476	100	0.227	Contact Map
3ijdA	2	0.9083	100	0.345	Contact Map
2p10A	5	0.8734	96.3	0.897	Contact Map
1tqjA	4	0.8734	96.1	0.899	Contact Map
1h1yA	2	0.8472	95.7	0.902	Contact Map
1rpxA	4	0.8603	95.2	0.906	Contact Map
4ht3A	1	0.9127	95.1	0.906	Contact Map
2ekcA	1	0.8821	95.1	0.906	Contact Map
3navA	2	0.9127	95	0.907	Contact Map

Sequence Conservation (Image Generated using WebLogo v3)

Legend: Color is used to show Hydrophobicity (Blue: Hydrophilic, Green: Neutral and Black: Hydrophobic). Amount of gaps is represented by width.

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