Q97ZR7 - SULSO - GREMLIN Contacts

Home
GREMLIN
- Submit - Monomer
- Submit - Complex
Contacts
Metagenomics
- Contacts
- Structures
Structures
- List
Old Projects
- Complexes (2014)
- PFAM (2013)

Q97ZR7 - Second ORF in transposon ISC1173

UniProt:	Q97ZR7	Sequences: MVIPKLKALILKSFYGPLELPGFSDKCYSDRVIKNGSSRGKSKYKCKVCGRTFYRTASHRMSREQRERILREYTNRMSLRGISKVEGRPLTTVYSSVKRAALKAYVDLSILQAQLKAFRSKFAVLDESWTYVRVRRGPRRQNLWIWNALIDGVPFFVTGDRDYNTFRLLWLSLPKCEVHYTDDYPIYQVLYHHVVGKKYTHTVESYNSFCRSHLVRLARDTKAVNRSRAMIDYSLDLLNVMYPQAFTDEKTPLNLAYLSGVQYIRDHLI	Download Alignment We filter this alignment to remove sites that have many gaps before running GREMLIN. Date: 2015_01
Length:	269 (226)
Sequences:	195 (189)
Seq/√Len:	12.6

SULSO - Q97ZR7

GREMLIN Results:

Legend: The darker and larger the blue dots, the higher coevolution strength.

Residue pairs sorted by coevolution strength:

i	j	Sco	Prob
72_E	75_N	6.675	1.00
12_K	16_G	3.782	0.99
72_E	88_R	3.757	0.99
72_E	85_V	3.369	0.98
75_N	88_R	3.240	0.98
14_F	18_L	2.743	0.94
75_N	79_L	2.603	0.92
24_S	27_C	2.501	0.90
72_E	79_L	2.500	0.90
17_P	21_P	2.433	0.89
36_G	40_G	2.409	0.88
88_R	93_V	2.261	0.85
24_S	34_K	2.207	0.83
22_G	33_I	2.166	0.82
24_S	46_C	2.115	0.80
27_C	34_K	2.109	0.80
75_N	85_V	2.100	0.80
34_K	38_S	2.094	0.80
34_K	61_M	2.073	0.79
46_C	49_C	2.010	0.77
27_C	46_C	2.001	0.76
24_S	61_M	1.991	0.76
40_G	53_F	1.974	0.75
16_G	24_S	1.957	0.75
24_S	38_S	1.956	0.75
12_K	34_K	1.942	0.74
49_C	61_M	1.931	0.74
70_L	75_N	1.915	0.73
42_S	55_R	1.901	0.73
38_S	61_M	1.889	0.72
16_G	38_S	1.886	0.72
9_L	12_K	1.819	0.69
113_A	118_F	1.808	0.69
16_G	61_M	1.793	0.68
16_G	34_K	1.768	0.67
46_C	61_M	1.763	0.67
36_G	39_R	1.692	0.63
40_G	43_K	1.660	0.62
12_K	24_S	1.658	0.62
34_K	49_C	1.599	0.59
212_S	215_V	1.596	0.59
12_K	61_M	1.581	0.58
18_L	21_P	1.566	0.57
12_K	38_S	1.550	0.56
110_I	117_A	1.548	0.56
24_S	49_C	1.522	0.55
17_P	40_G	1.516	0.55
54_Y	58_S	1.513	0.54
38_S	49_C	1.429	0.50
27_C	49_C	1.428	0.50
224_V	228_R	1.427	0.50
4_P	39_R	1.422	0.50
34_K	46_C	1.418	0.50
17_P	39_R	1.400	0.49
3_I	53_F	1.393	0.48
74_T	82_I	1.352	0.46
51_R	65_Q	1.351	0.46
16_G	49_C	1.342	0.46
24_S	31_R	1.338	0.45
23_F	57_A	1.335	0.45
14_F	21_P	1.330	0.45
3_I	12_K	1.309	0.44
223_A	226_R	1.296	0.43
113_A	120_S	1.293	0.43
193_H	197_K	1.285	0.43
41_K	50_G	1.273	0.42
12_K	27_C	1.268	0.42
18_L	39_R	1.257	0.41
18_L	41_K	1.255	0.41
5_K	20_L	1.243	0.41
38_S	46_C	1.237	0.40
135_R	140_R	1.231	0.40
199_Y	202_T	1.227	0.40
21_P	41_K	1.225	0.40
6_L	9_L	1.223	0.40
27_C	43_K	1.221	0.40
9_L	16_G	1.218	0.39
7_K	14_F	1.216	0.39
88_R	92_T	1.215	0.39
158_T	161_R	1.209	0.39
159_G	168_L	1.193	0.38
27_C	31_R	1.187	0.38
15_Y	29_S	1.187	0.38
44_Y	56_T	1.171	0.37
26_K	42_S	1.162	0.37
27_C	61_M	1.160	0.37
192_H	197_K	1.157	0.36
3_I	16_G	1.156	0.36
36_G	53_F	1.150	0.36
16_G	46_C	1.143	0.36
37_S	55_R	1.142	0.36
17_P	41_K	1.139	0.36
4_P	7_K	1.138	0.36
5_K	11_L	1.135	0.35
12_K	49_C	1.135	0.35
27_C	38_S	1.116	0.35
16_G	27_C	1.108	0.34
39_R	43_K	1.099	0.34
19_E	41_K	1.091	0.33
4_P	8_A	1.090	0.33
38_S	43_K	1.084	0.33
15_Y	63_R	1.082	0.33
109_S	116_K	1.079	0.33
33_I	54_Y	1.068	0.32
29_S	50_G	1.065	0.32
89_P	93_V	1.054	0.32
159_G	165_T	1.047	0.31
28_Y	50_G	1.044	0.31
18_L	42_S	1.040	0.31
129_W	132_V	1.038	0.31
216_R	220_D	1.037	0.31
130_T	140_R	1.035	0.31
6_L	11_L	1.034	0.31
50_G	66_R	1.032	0.31
9_L	43_K	1.031	0.31
179_H	185_P	1.008	0.30
19_E	39_R	1.002	0.29
176_C	181_T	0.992	0.29
26_K	32_V	0.978	0.28
219_R	225_N	0.974	0.28
75_N	89_P	0.968	0.28
32_V	39_R	0.964	0.28
23_F	58_S	0.958	0.28
36_G	44_Y	0.956	0.28
94_Y	98_K	0.954	0.27
18_L	26_K	0.951	0.27
111_L	117_A	0.939	0.27
110_I	116_K	0.936	0.27
52_T	57_A	0.935	0.27
24_S	43_K	0.933	0.27
122_F	126_D	0.930	0.26
12_K	46_C	0.923	0.26
193_H	198_K	0.923	0.26
12_K	22_G	0.909	0.26
63_R	76_R	0.901	0.25
195_V	207_N	0.898	0.25
16_G	31_R	0.897	0.25
37_S	80_R	0.895	0.25
35_N	58_S	0.890	0.25
34_K	43_K	0.887	0.25
218_A	221_T	0.887	0.25
22_G	53_F	0.884	0.25
12_K	31_R	0.878	0.24
113_A	116_K	0.870	0.24
22_G	30_D	0.860	0.24
115_L	120_S	0.847	0.23
33_I	37_S	0.846	0.23
40_G	52_T	0.844	0.23
14_F	17_P	0.838	0.23
6_L	20_L	0.834	0.23
4_P	10_I	0.829	0.23
73_Y	86_E	0.827	0.23
6_L	15_Y	0.826	0.23
40_G	54_Y	0.824	0.22
126_D	216_R	0.821	0.22
39_R	53_F	0.821	0.22
181_T	185_P	0.820	0.22
159_G	170_W	0.818	0.22
221_T	226_R	0.817	0.22
6_L	22_G	0.811	0.22
66_R	69_I	0.809	0.22
114_Q	118_F	0.808	0.22
7_K	20_L	0.806	0.22
136_R	139_R	0.805	0.22
14_F	19_E	0.805	0.22
62_S	66_R	0.799	0.22
192_H	195_V	0.796	0.21
147_N	151_D	0.793	0.21
5_K	10_I	0.792	0.21
13_S	62_S	0.792	0.21
10_I	19_E	0.791	0.21
7_K	13_S	0.787	0.21
96_S	103_K	0.781	0.21
31_R	46_C	0.777	0.21
122_F	127_E	0.776	0.21
37_S	43_K	0.774	0.21
99_R	102_L	0.774	0.21
143_L	161_R	0.772	0.21
90_L	94_Y	0.769	0.21
75_N	81_G	0.769	0.21
72_E	89_P	0.766	0.20
44_Y	173_L	0.764	0.20
182_D	202_T	0.761	0.20
7_K	65_Q	0.760	0.20
6_L	59_H	0.759	0.20
223_A	227_S	0.756	0.20
21_P	40_G	0.752	0.20
30_D	63_R	0.750	0.20
14_F	54_Y	0.747	0.20
9_L	58_S	0.746	0.20
14_F	41_K	0.745	0.20
76_R	80_R	0.740	0.20
18_L	40_G	0.739	0.20
207_N	210_C	0.733	0.19
14_F	58_S	0.732	0.19
176_C	179_H	0.726	0.19
39_R	59_H	0.725	0.19
223_A	228_R	0.722	0.19
10_I	37_S	0.722	0.19
209_F	219_R	0.720	0.19
4_P	20_L	0.716	0.19
39_R	48_V	0.715	0.19
18_L	65_Q	0.714	0.19
47_K	52_T	0.709	0.19
79_L	82_I	0.707	0.19
215_V	218_A	0.703	0.18
221_T	224_V	0.702	0.18
115_L	119_R	0.701	0.18
71_R	76_R	0.699	0.18
28_Y	57_A	0.697	0.18
73_Y	76_R	0.697	0.18
103_K	107_D	0.695	0.18
98_K	101_A	0.694	0.18
41_K	53_F	0.694	0.18
115_L	118_F	0.693	0.18
22_G	54_Y	0.692	0.18
116_K	119_R	0.691	0.18
205_S	211_R	0.688	0.18
30_D	55_R	0.687	0.18
22_G	65_Q	0.686	0.18
50_G	62_S	0.685	0.18
33_I	60_R	0.685	0.18
33_I	36_G	0.683	0.18
150_I	212_S	0.681	0.18
4_P	13_S	0.677	0.18
85_V	88_R	0.677	0.18
39_R	70_L	0.672	0.17
217_L	221_T	0.672	0.17
160_D	172_S	0.670	0.17
39_R	65_Q	0.670	0.17
222_K	227_S	0.665	0.17
5_K	57_A	0.663	0.17
128_S	132_V	0.663	0.17
220_D	223_A	0.656	0.17
14_F	55_R	0.656	0.17
124_V	129_W	0.655	0.17
6_L	13_S	0.654	0.17
134_V	203_V	0.654	0.17
175_K	190_L	0.651	0.17
44_Y	57_A	0.648	0.17
125_L	145_I	0.648	0.17
14_F	40_G	0.646	0.17
73_Y	81_G	0.642	0.17
26_K	40_G	0.642	0.17
213_H	222_K	0.641	0.17
21_P	39_R	0.640	0.17
153_V	174_P	0.639	0.17
41_K	57_A	0.636	0.16
137_G	141_Q	0.634	0.16
48_V	51_R	0.633	0.16
33_I	39_R	0.632	0.16
117_A	124_V	0.631	0.16
54_Y	60_R	0.626	0.16
202_T	210_C	0.625	0.16
45_K	64_E	0.621	0.16
13_S	52_T	0.620	0.16
52_T	58_S	0.618	0.16
175_K	186_I	0.618	0.16
44_Y	53_F	0.617	0.16
113_A	117_A	0.601	0.15
177_E	181_T	0.601	0.15
29_S	69_I	0.600	0.15
75_N	92_T	0.600	0.15
16_G	20_L	0.599	0.15
200_T	206_Y	0.598	0.15
35_N	50_G	0.597	0.15
221_T	228_R	0.597	0.15
97_V	100_A	0.596	0.15
218_A	223_A	0.595	0.15
177_E	188_Q	0.593	0.15
206_Y	223_A	0.591	0.15
8_A	37_S	0.586	0.15
218_A	224_V	0.582	0.15
39_R	57_A	0.581	0.15
43_K	46_C	0.580	0.15
28_Y	54_Y	0.579	0.15
213_H	227_S	0.577	0.15
7_K	42_S	0.577	0.15
15_Y	30_D	0.577	0.15
3_I	14_F	0.574	0.15
215_V	220_D	0.574	0.15
111_L	116_K	0.574	0.15
16_G	22_G	0.574	0.15
4_P	11_L	0.569	0.15
82_I	86_E	0.568	0.15
191_Y	215_V	0.565	0.15
6_L	10_I	0.561	0.14
6_L	28_Y	0.560	0.14
5_K	64_E	0.556	0.14
79_L	88_R	0.556	0.14
164_N	178_V	0.556	0.14
73_Y	84_K	0.555	0.14
208_S	216_R	0.555	0.14
26_K	59_H	0.554	0.14
9_L	28_Y	0.554	0.14
8_A	57_A	0.554	0.14
217_L	226_R	0.551	0.14
9_L	27_C	0.551	0.14
191_Y	210_C	0.550	0.14
222_K	226_R	0.549	0.14
216_R	223_A	0.548	0.14
29_S	60_R	0.546	0.14
47_K	50_G	0.546	0.14
194_V	197_K	0.544	0.14
131_Y	140_R	0.543	0.14
89_P	92_T	0.542	0.14
17_P	33_I	0.541	0.14
224_V	227_S	0.539	0.14
131_Y	135_R	0.538	0.14
50_G	64_E	0.538	0.14
136_R	208_S	0.536	0.14
108_L	116_K	0.536	0.14
32_V	59_H	0.535	0.14
96_S	107_D	0.534	0.14
43_K	55_R	0.533	0.14
109_S	112_Q	0.532	0.14
192_H	196_G	0.528	0.14
10_I	17_P	0.528	0.14
36_G	51_R	0.527	0.14
121_K	132_V	0.525	0.14
112_Q	120_S	0.524	0.13
142_N	156_F	0.524	0.13
219_R	222_K	0.520	0.13
207_N	212_S	0.516	0.13
35_N	45_K	0.515	0.13
33_I	64_E	0.514	0.13
11_L	17_P	0.511	0.13
31_R	61_M	0.510	0.13
5_K	50_G	0.510	0.13
124_V	127_E	0.507	0.13
25_D	30_D	0.507	0.13
55_R	58_S	0.505	0.13
52_T	66_R	0.504	0.13
30_D	45_K	0.504	0.13
149_L	175_K	0.504	0.13
127_E	136_R	0.503	0.13
110_I	118_F	0.503	0.13
152_G	174_P	0.500	0.13
222_K	228_R	0.500	0.13

Legend: The i and j are positions as given in the UniProt sequence. Only predictions with Prob ≥ 0.7 are listed. For all 3L/2 predictions, click on one of the links below.

Sco = ((raw_sco - min_sco)/(avg_sco - min_sco))/2 + 0.5
Prob = P(contact | Sco, seq80/√len)
seq80 = effective number of sequences, after reducing redundancy to 80% identity

Text file of predictions (all 3L/2 predictions)
Generate restraints for ROSETTA Structure Modeling
Upload PDB model overlay contacts on the model

HHsearch Results:

Legend: GREMLIN results (Prob ≥ 0.7) overlaid on top PDB hits. The grey/red filled circles underneath are pdb residue contacts (min distance < 5 Angstroms). The shade of the circles is based on the top 10 (or top 20 if e-value < 1E-20) HHsearch results which uses the overall probability and per-site alignment prob. Inter oligomeric contacts in the pdb are in shades of red.

PDB	Chains	Cov	%	HHΔ
2i13A	1	0.342	99.8	0.625	Contact Map
2n25A	1	0.0855	99.8	0.634	Contact Map
3w5kB	1	0.3494	99.8	0.638	Contact Map
2lt7A	1	0.4572	99.8	0.644	Contact Map
2jp9A	1	0.342	99.7	0.646	Contact Map
2dlqA	1	0.368	99.7	0.648	Contact Map
2gliA	1	0.3494	99.7	0.651	Contact Map
1ubdC	1	0.342	99.7	0.653	Contact Map
2wbtA	2	0.3606	99.7	0.657	Contact Map
3zmsC	1	0	99.7	0.666	Contact Map

Sequence Conservation (Image Generated using WebLogo v3)

Legend: Color is used to show Hydrophobicity (Blue: Hydrophilic, Green: Neutral and Black: Hydrophobic). Amount of gaps is represented by width.

Page generated in 0.0081 seconds.