GCSPA - SULSO - GREMLIN Contacts

Home
GREMLIN
- Submit - Monomer
- Submit - Complex
Contacts
Metagenomics
- Contacts
- Structures
Structures
- List
Old Projects
- Complexes (2014)
- PFAM (2013)

GCSPA - Probable glycine dehydrogenase (decarboxylating) subunit 1

UniProt:	Q97ZI8	Sequences: MYKHPWLPNLDLTDEMLKEIGVNSLDDLFNDIPAEIKINRLLKVAKDKPLSEYEIEKEIYEKVKKNVELEAPPFIGAGICPHYIPNAVKFIIGRSEFYTSYTPYQPEISQGILQALFEYQSLMAELLEMDVVNASMYDWGSALAEAVLMANRINGKKTVLVPENANPFHKEVMRTWIQGKGIKIEEVKYDKNSGEVDIEDLEKKSSSNDVSAIYVQQPNFFGIFESNIEHIIDVAKHKKALSIIGVNPLSLGLIKPPGSYEADIVVGDGQELGLPLNFGGPLMGIFAVRWDMGLVRQMPGRIVGITRDVNNNMGFTLILQTREQFIKREKATSNITTNEALLALANAVYLSLLGKEGIRELAEEIYFRSHYAAKRLTEIDNVIMPFTSDFFEEFVIKFPIEYNIINDKLKERKLQGGLKLSIHTSLFCVTEVHDKKSIDLLVSTIQEAIKSVETS	Download Alignment We filter this alignment to remove sites that have many gaps before running GREMLIN. Date: 2015_01
Length:	455 (398)
Sequences:	5190 (2719)
Seq/√Len:	136.3

ECOLI - GCSP
BACSU - GCSPA GCSPB
HALSA - GCSPA GCSPB
SULSO - GCSPA GCSPB

GREMLIN Results:

Legend: The darker and larger the blue dots, the higher coevolution strength.

Residue pairs sorted by coevolution strength:

i	j	Sco	Prob
233_D	237_H	3.558	1.00
256_P	259_S	3.424	1.00
379_I	446_Q	3.314	1.00
130_D	289_R	3.185	1.00
359_R	363_E	3.058	1.00
166_N	220_F	3.053	1.00
158_T	183_K	2.980	1.00
205_S	234_V	2.896	1.00
129_M	265_V	2.879	1.00
91_I	348_V	2.851	1.00
375_R	442_V	2.848	1.00
246_V	285_I	2.731	1.00
150_A	297_Q	2.730	1.00
235_A	240_A	2.675	1.00
372_A	429_V	2.671	1.00
200_D	204_K	2.659	1.00
290_W	295_V	2.626	1.00
114_Q	118_E	2.612	1.00
374_K	377_T	2.536	1.00
383_I	397_K	2.484	1.00
249_L	365_I	2.459	1.00
170_K	186_E	2.411	1.00
255_K	259_S	2.386	1.00
158_T	185_E	2.326	1.00
159_V	212_A	2.262	1.00
229_E	233_D	2.242	1.00
412_R	447_E	2.216	1.00
160_L	187_V	2.193	1.00
229_E	255_K	2.186	1.00
232_I	242_S	2.177	1.00
252_G	358_I	2.109	1.00
163_E	188_K	2.086	1.00
132_V	287_A	2.062	1.00
232_I	260_Y	2.029	1.00
398_F	405_I	2.000	1.00
165_A	170_K	2.000	1.00
157_K	183_K	1.987	1.00
50_L	58_E	1.958	1.00
158_T	207_S	1.947	1.00
147_V	214_Y	1.943	1.00
247_N	392_E	1.928	1.00
81_P	432_V	1.918	1.00
375_R	378_E	1.894	1.00
188_K	200_D	1.894	1.00
51_S	54_E	1.892	1.00
421_S	424_T	1.891	1.00
269_G	285_I	1.880	1.00
372_A	394_F	1.840	1.00
372_A	438_I	1.825	1.00
416_G	441_L	1.808	1.00
131_V	295_V	1.802	1.00
56_E	87_A	1.799	1.00
372_A	442_V	1.781	1.00
398_F	402_Y	1.780	1.00
84_I	345_A	1.756	1.00
158_T	209_D	1.754	1.00
79_I	282_L	1.748	1.00
54_E	434_D	1.748	1.00
115_A	344_L	1.719	1.00
117_F	315_F	1.708	1.00
127_L	266_V	1.700	1.00
230_H	233_D	1.693	1.00
150_A	324_Q	1.685	1.00
213_I	235_A	1.678	1.00
202_E	230_H	1.674	1.00
417_G	426_L	1.671	1.00
435_K	439_D	1.652	1.00
80_C	428_C	1.646	1.00
364_E	368_R	1.637	1.00
72_P	437_S	1.630	1.00
122_L	351_S	1.625	1.00
215_V	228_I	1.625	1.00
371_Y	435_K	1.613	1.00
414_L	444_T	1.613	1.00
205_S	210_V	1.604	1.00
117_F	305_I	1.599	1.00
159_V	214_Y	1.596	1.00
130_D	290_W	1.595	1.00
233_D	236_K	1.591	1.00
406_N	418_L	1.578	1.00
101_Y	109_S	1.572	1.00
224_F	254_I	1.567	1.00
67_V	73_P	1.562	1.00
395_V	424_T	1.560	1.00
368_R	438_I	1.553	1.00
202_E	234_V	1.539	1.00
163_E	186_E	1.526	1.00
150_A	243_I	1.516	1.00
373_A	390_F	1.514	1.00
375_R	443_S	1.490	1.00
397_K	423_H	1.476	1.00
340_A	344_L	1.475	1.00
79_I	276_L	1.465	1.00
121_S	124_A	1.460	1.00
115_A	347_A	1.460	1.00
369_S	394_F	1.450	1.00
27_D	31_D	1.426	1.00
229_E	260_Y	1.424	1.00
164_N	221_F	1.423	1.00
207_S	238_K	1.421	1.00
288_V	294_L	1.411	1.00
243_I	262_A	1.399	1.00
105_Q	109_S	1.392	1.00
256_P	260_Y	1.392	1.00
219_N	225_E	1.390	1.00
148_L	151_N	1.383	1.00
395_V	426_L	1.362	1.00
92_I	345_A	1.362	1.00
147_V	159_V	1.362	1.00
353_L	361_L	1.358	1.00
157_K	209_D	1.355	1.00
227_N	230_H	1.349	1.00
118_E	347_A	1.349	1.00
153_I	294_L	1.348	1.00
215_V	242_S	1.345	1.00
69_L	413_K	1.343	1.00
214_Y	245_G	1.326	1.00
162_P	196_V	1.325	1.00
375_R	446_Q	1.324	1.00
124_A	132_V	1.312	1.00
124_A	130_D	1.309	1.00
243_I	266_V	1.304	1.00
158_T	210_V	1.302	1.00
376_L	445_I	1.299	1.00
274_L	342_L	1.296	1.00
406_N	416_G	1.293	1.00
369_S	429_V	1.287	1.00
205_S	238_K	1.287	1.00
116_L	134_A	1.283	1.00
160_L	204_K	1.282	1.00
200_D	203_K	1.274	1.00
58_E	62_K	1.271	1.00
375_R	439_D	1.271	1.00
370_H	390_F	1.270	1.00
401_E	404_I	1.264	1.00
74_F	437_S	1.261	1.00
30_N	37_K	1.255	1.00
169_H	245_G	1.241	1.00
165_A	216_Q	1.238	1.00
119_Y	343_A	1.231	1.00
366_Y	370_H	1.224	1.00
112_I	340_A	1.224	1.00
88_V	348_V	1.223	1.00
409_L	416_G	1.207	1.00
110_Q	113_L	1.201	1.00
273_G	353_L	1.197	1.00
81_P	430_T	1.196	1.00
60_Y	63_V	1.195	1.00
74_F	414_L	1.193	1.00
162_P	189_Y	1.192	1.00
408_K	411_E	1.189	1.00
88_V	352_L	1.181	0.99
429_V	433_H	1.179	0.99
202_E	237_H	1.178	0.99
208_N	238_K	1.177	0.99
95_S	98_Y	1.177	0.99
407_D	411_E	1.166	0.99
144_A	264_I	1.166	0.99
34_A	37_K	1.163	0.99
67_V	413_K	1.162	0.99
160_L	185_E	1.160	0.99
408_K	412_R	1.159	0.99
81_P	433_H	1.155	0.99
348_V	352_L	1.151	0.99
34_A	39_N	1.145	0.99
83_Y	432_V	1.144	0.99
146_A	149_M	1.129	0.99
395_V	420_L	1.127	0.99
286_F	298_M	1.127	0.99
442_V	446_Q	1.121	0.99
121_S	125_E	1.120	0.99
371_Y	439_D	1.119	0.99
356_E	360_E	1.116	0.99
80_C	166_N	1.107	0.99
217_Q	260_Y	1.101	0.99
128_E	256_P	1.100	0.99
414_L	440_L	1.097	0.99
164_N	219_N	1.096	0.99
266_V	286_F	1.094	0.99
406_N	410_K	1.094	0.99
99_T	341_L	1.089	0.99
101_Y	112_I	1.089	0.99
105_Q	108_I	1.087	0.99
347_A	351_S	1.086	0.99
360_E	363_E	1.083	0.99
148_L	153_I	1.081	0.99
369_S	390_F	1.080	0.99
232_I	241_L	1.076	0.99
148_L	182_I	1.072	0.99
72_P	440_L	1.069	0.99
80_C	430_T	1.067	0.99
248_P	269_G	1.063	0.99
217_Q	254_I	1.060	0.99
117_F	120_Q	1.049	0.99
420_L	426_L	1.047	0.99
403_N	418_L	1.041	0.99
433_H	437_S	1.040	0.99
247_N	271_E	1.040	0.99
123_M	287_A	1.028	0.99
427_F	441_L	1.024	0.99
143_L	214_Y	1.014	0.98
165_A	214_Y	1.014	0.98
255_K	260_Y	1.010	0.98
145_E	149_M	1.005	0.98
235_A	242_S	1.003	0.98
244_I	260_Y	1.002	0.98
382_V	396_I	1.000	0.98
27_D	30_N	0.999	0.98
368_R	435_K	0.999	0.98
120_Q	131_V	0.998	0.98
412_R	440_L	0.995	0.98
198_I	227_N	0.995	0.98
152_R	297_Q	0.988	0.98
232_I	236_K	0.980	0.98
87_A	352_L	0.974	0.98
130_D	288_V	0.973	0.98
150_A	264_I	0.969	0.98
248_P	266_V	0.966	0.98
89_K	92_I	0.965	0.98
60_Y	64_K	0.959	0.98
115_A	348_V	0.959	0.98
130_D	295_V	0.953	0.98
253_L	366_Y	0.950	0.98
69_L	410_K	0.949	0.98
296_R	324_Q	0.946	0.98
232_I	244_I	0.945	0.98
228_I	260_Y	0.942	0.97
118_E	122_L	0.940	0.97
440_L	444_T	0.932	0.97
283_M	343_A	0.930	0.97
365_I	392_E	0.930	0.97
373_A	377_T	0.929	0.97
236_K	242_S	0.927	0.97
77_A	166_N	0.925	0.97
397_K	424_T	0.925	0.97
58_E	61_E	0.921	0.97
396_I	427_F	0.919	0.97
215_V	232_I	0.918	0.97
149_M	154_N	0.916	0.97
82_H	276_L	0.915	0.97
360_E	364_E	0.915	0.97
137_Y	330_K	0.915	0.97
216_Q	245_G	0.910	0.97
219_N	223_I	0.909	0.97
283_M	346_N	0.908	0.97
161_V	165_A	0.901	0.97
155_G	209_D	0.899	0.97
412_R	444_T	0.895	0.97
376_L	382_V	0.893	0.96
402_Y	406_N	0.893	0.96
300_G	328_R	0.891	0.96
104_Y	336_T	0.888	0.96
406_N	425_S	0.886	0.96
37_K	40_R	0.884	0.96
133_N	286_F	0.884	0.96
118_E	351_S	0.883	0.96
116_L	283_M	0.882	0.96
207_S	210_V	0.881	0.96
116_L	337_T	0.881	0.96
122_L	350_L	0.880	0.96
109_S	113_L	0.877	0.96
213_I	231_I	0.876	0.96
150_A	212_A	0.875	0.96
190_D	225_E	0.873	0.96
198_I	234_V	0.871	0.96
187_V	204_K	0.870	0.96
342_L	345_A	0.869	0.96
212_A	243_I	0.868	0.96
150_A	241_L	0.864	0.96
246_V	250_S	0.860	0.96
254_I	363_E	0.854	0.95
386_F	424_T	0.854	0.95
366_Y	390_F	0.849	0.95
443_S	446_Q	0.845	0.95
273_G	342_L	0.845	0.95
441_L	445_I	0.843	0.95
68_E	72_P	0.843	0.95
217_Q	250_S	0.842	0.95
246_V	269_G	0.841	0.95
349_Y	361_L	0.841	0.95
74_F	433_H	0.838	0.95
81_P	276_L	0.838	0.95
356_E	363_E	0.832	0.95
248_P	252_G	0.832	0.95
143_L	169_H	0.831	0.95
223_I	388_S	0.831	0.95
420_L	423_H	0.830	0.95
400_I	423_H	0.829	0.95
301_R	336_T	0.826	0.95
129_M	258_G	0.826	0.95
289_R	294_L	0.818	0.94
94_R	97_F	0.815	0.94
143_L	286_F	0.814	0.94
401_E	423_H	0.810	0.94
267_G	285_I	0.809	0.94
197_D	200_D	0.807	0.94
350_L	358_I	0.806	0.94
399_P	402_Y	0.806	0.94
217_Q	224_F	0.803	0.94
225_E	228_I	0.803	0.94
243_I	260_Y	0.799	0.94
156_K	211_S	0.798	0.94
376_L	396_I	0.798	0.94
73_P	276_L	0.798	0.94
269_G	283_M	0.795	0.93
77_A	220_F	0.793	0.93
368_R	429_V	0.792	0.93
126_L	350_L	0.792	0.93
147_V	177_I	0.790	0.93
404_I	407_D	0.789	0.93
129_M	262_A	0.789	0.93
410_K	416_G	0.788	0.93
124_A	129_M	0.787	0.93
390_F	394_F	0.785	0.93
131_V	302_I	0.784	0.93
54_E	436_K	0.783	0.93
414_L	437_S	0.782	0.93
119_Y	269_G	0.781	0.93
55_I	59_I	0.780	0.93
104_Y	301_R	0.778	0.93
243_I	251_L	0.777	0.93
53_Y	83_Y	0.777	0.93
161_V	170_K	0.777	0.93
38_I	42_L	0.776	0.93
182_I	212_A	0.776	0.93
412_R	443_S	0.775	0.93
252_G	361_L	0.774	0.92
164_N	189_Y	0.773	0.92
113_L	117_F	0.773	0.92
30_N	34_A	0.771	0.92
369_S	428_C	0.768	0.92
235_A	239_K	0.768	0.92
77_A	426_L	0.768	0.92
165_A	186_E	0.767	0.92
398_F	401_E	0.767	0.92
125_E	256_P	0.763	0.92
132_V	286_F	0.762	0.92
439_D	443_S	0.760	0.92
163_E	189_Y	0.759	0.92
416_G	426_L	0.759	0.92
149_M	153_I	0.759	0.92
160_L	210_V	0.757	0.92
401_E	405_I	0.756	0.92
234_V	238_K	0.756	0.92
349_Y	353_L	0.750	0.91
91_I	94_R	0.746	0.91
126_L	358_I	0.745	0.91
230_H	234_V	0.743	0.91
77_A	418_L	0.741	0.91
288_V	298_M	0.739	0.91
169_H	216_Q	0.738	0.91
276_L	282_L	0.737	0.91
153_I	156_K	0.736	0.90
439_D	442_V	0.736	0.90
50_L	55_I	0.732	0.90
153_I	297_Q	0.730	0.90
198_I	202_E	0.730	0.90
327_K	330_K	0.730	0.90
33_P	36_I	0.730	0.90
119_Y	283_M	0.727	0.90
101_Y	107_E	0.726	0.90
101_Y	105_Q	0.723	0.90
89_K	93_G	0.723	0.90
234_V	237_H	0.722	0.90
64_K	72_P	0.722	0.90
302_I	331_A	0.719	0.89
394_F	427_F	0.718	0.89
74_F	429_V	0.718	0.89
417_G	420_L	0.717	0.89
77_A	417_G	0.717	0.89
403_N	407_D	0.716	0.89
400_I	408_K	0.715	0.89
109_S	337_T	0.714	0.89
244_I	262_A	0.710	0.89
386_F	397_K	0.709	0.89
300_G	306_T	0.709	0.89
29_F	32_I	0.708	0.89
123_M	269_G	0.707	0.89
372_A	376_L	0.706	0.89
436_K	440_L	0.704	0.88
434_D	437_S	0.704	0.88
89_K	345_A	0.704	0.88
61_E	64_K	0.703	0.88
300_G	321_T	0.703	0.88
150_A	159_V	0.703	0.88
361_L	365_I	0.703	0.88
151_N	211_S	0.703	0.88
164_N	223_I	0.703	0.88
244_I	256_P	0.703	0.88
274_L	345_A	0.702	0.88
133_N	298_M	0.702	0.88
110_Q	117_F	0.700	0.88
74_F	441_L	0.698	0.88
185_E	204_K	0.698	0.88
83_Y	86_N	0.695	0.88
436_K	439_D	0.693	0.88
414_L	441_L	0.690	0.87
183_K	209_D	0.690	0.87
149_M	288_V	0.689	0.87
120_Q	302_I	0.687	0.87
372_A	441_L	0.685	0.87
400_I	404_I	0.685	0.87
228_I	244_I	0.685	0.87
79_I	141_S	0.684	0.87
305_I	313_M	0.677	0.86
164_N	196_V	0.676	0.86
379_I	442_V	0.675	0.86
159_V	211_S	0.673	0.86
244_I	265_V	0.672	0.86
367_F	371_Y	0.672	0.86
107_E	110_Q	0.671	0.86
396_I	445_I	0.670	0.86
408_K	448_A	0.670	0.86
300_G	322_R	0.669	0.86
269_G	272_L	0.668	0.86
304_G	337_T	0.667	0.86
125_E	355_K	0.667	0.86
306_T	314_G	0.662	0.85
189_Y	221_F	0.661	0.85
432_V	437_S	0.660	0.85
399_P	423_H	0.659	0.85
302_I	322_R	0.658	0.85
212_A	239_K	0.657	0.85
86_N	89_K	0.656	0.85
320_Q	325_F	0.654	0.84
26_D	37_K	0.649	0.84
196_V	231_I	0.648	0.84
405_I	445_I	0.646	0.84
355_K	359_R	0.644	0.84
75_I	415_Q	0.643	0.83
348_V	351_S	0.642	0.83
268_D	285_I	0.642	0.83
363_E	367_F	0.641	0.83
220_F	417_G	0.640	0.83
368_R	371_Y	0.635	0.83
38_I	41_L	0.635	0.83
409_L	414_L	0.634	0.83
159_V	182_I	0.633	0.83
40_R	43_K	0.633	0.83
236_K	240_A	0.633	0.83
377_T	380_D	0.632	0.82
89_K	273_G	0.631	0.82
301_R	304_G	0.627	0.82
378_E	446_Q	0.627	0.82
268_D	284_G	0.625	0.82
32_I	37_K	0.624	0.82
115_A	340_A	0.621	0.81
116_L	343_A	0.619	0.81
380_D	405_I	0.614	0.81
355_K	358_I	0.614	0.81
144_A	212_A	0.612	0.80
194_G	386_F	0.612	0.80
120_Q	134_A	0.611	0.80
300_G	331_A	0.609	0.80
129_M	287_A	0.609	0.80
73_P	81_P	0.607	0.80
433_H	438_I	0.607	0.80
228_I	232_I	0.605	0.80
188_K	191_K	0.602	0.79
44_V	49_P	0.599	0.79
253_L	363_E	0.596	0.79
136_M	286_F	0.596	0.79
297_Q	324_Q	0.594	0.78
373_A	394_F	0.594	0.78
375_R	379_I	0.593	0.78
402_Y	425_S	0.591	0.78
253_L	362_A	0.591	0.78
161_V	214_Y	0.588	0.78
420_L	424_T	0.588	0.78
246_V	265_V	0.588	0.78
72_P	414_L	0.587	0.78
93_G	99_T	0.587	0.78
202_E	205_S	0.586	0.77
89_K	97_F	0.581	0.77
73_P	76_G	0.581	0.77
300_G	323_E	0.581	0.77
402_Y	421_S	0.579	0.77
383_I	386_F	0.579	0.77
380_D	445_I	0.578	0.77
210_V	234_V	0.578	0.77
252_G	362_A	0.576	0.76
205_S	235_A	0.576	0.76
123_M	133_N	0.576	0.76
149_M	264_I	0.573	0.76
136_M	284_G	0.573	0.76
109_S	328_R	0.572	0.76
374_K	378_E	0.572	0.76
249_L	349_Y	0.571	0.76
264_I	297_Q	0.569	0.75
429_V	438_I	0.568	0.75
57_K	83_Y	0.566	0.75
339_E	342_L	0.566	0.75
404_I	408_K	0.564	0.75
236_K	241_L	0.563	0.75
383_I	399_P	0.563	0.75
394_F	429_V	0.562	0.75
266_V	344_L	0.562	0.75
300_G	330_K	0.558	0.74
427_F	445_I	0.557	0.74
26_D	30_N	0.557	0.74
308_D	311_N	0.556	0.74
159_V	243_I	0.556	0.74
40_R	44_V	0.555	0.74
400_I	405_I	0.555	0.74
58_E	106_P	0.554	0.73
69_L	73_P	0.553	0.73
249_L	252_G	0.552	0.73
90_F	95_S	0.552	0.73
169_H	214_Y	0.552	0.73
224_F	366_Y	0.551	0.73
113_L	303_V	0.551	0.73
128_E	258_G	0.551	0.73
307_R	311_N	0.550	0.73
365_I	369_S	0.550	0.73
101_Y	304_G	0.550	0.73
177_I	182_I	0.548	0.73
251_L	255_K	0.548	0.73
89_K	95_S	0.548	0.73
45_A	48_K	0.546	0.72
115_A	343_A	0.545	0.72
129_M	243_I	0.544	0.72
377_T	387_T	0.543	0.72
382_V	398_F	0.543	0.72
372_A	427_F	0.542	0.72
262_A	265_V	0.541	0.72
370_H	373_A	0.540	0.72
373_A	382_V	0.539	0.71
289_R	295_V	0.539	0.71
104_Y	330_K	0.538	0.71
307_R	313_M	0.538	0.71
251_L	260_Y	0.537	0.71
104_Y	304_G	0.537	0.71
110_Q	114_Q	0.535	0.71
113_L	308_D	0.533	0.71
254_I	359_R	0.533	0.71
376_L	380_D	0.532	0.70
443_S	447_E	0.531	0.70
301_R	328_R	0.531	0.70
155_G	208_N	0.531	0.70
296_R	323_E	0.530	0.70
126_L	248_P	0.529	0.70
151_N	182_I	0.528	0.70
410_K	418_L	0.528	0.70
73_P	415_Q	0.527	0.70
93_G	97_F	0.527	0.70
147_V	212_A	0.526	0.70
353_L	358_I	0.526	0.70
154_N	211_S	0.525	0.69
136_M	335_I	0.525	0.69
163_E	221_F	0.525	0.69
296_R	322_R	0.525	0.69
300_G	320_Q	0.524	0.69
151_N	155_G	0.524	0.69
77_A	80_C	0.523	0.69
162_P	219_N	0.523	0.69
194_G	219_N	0.523	0.69
371_Y	375_R	0.522	0.69
429_V	432_V	0.522	0.69
272_L	365_I	0.521	0.69
408_K	447_E	0.521	0.69
312_N	315_F	0.521	0.69
221_F	395_V	0.521	0.69
120_Q	337_T	0.521	0.69
117_F	121_S	0.519	0.69
101_Y	330_K	0.519	0.69
379_I	382_V	0.519	0.69
37_K	42_L	0.519	0.69
107_E	113_L	0.517	0.68
49_P	55_I	0.516	0.68
313_M	316_T	0.516	0.68
107_E	304_G	0.516	0.68
109_S	304_G	0.515	0.68
402_Y	405_I	0.515	0.68
219_N	395_V	0.515	0.68
274_L	277_N	0.513	0.68
88_V	91_I	0.513	0.68
90_F	93_G	0.513	0.68
249_L	272_L	0.513	0.68
369_S	373_A	0.512	0.68
215_V	231_I	0.511	0.67
416_G	425_S	0.511	0.67
251_L	257_P	0.511	0.67
241_L	294_L	0.510	0.67
28_L	31_D	0.507	0.67
274_L	346_N	0.507	0.67
107_E	333_S	0.506	0.67
189_Y	225_E	0.506	0.67
107_E	306_T	0.506	0.67
308_D	312_N	0.505	0.67
155_G	183_K	0.505	0.67
220_F	418_L	0.502	0.66
72_P	433_H	0.502	0.66
371_Y	442_V	0.502	0.66
405_I	448_A	0.501	0.66
228_I	242_S	0.500	0.66
271_E	392_E	0.500	0.66
140_G	170_K	0.500	0.66

Legend: The i and j are positions as given in the UniProt sequence. Only predictions with Prob ≥ 0.7 are listed. For all 3L/2 predictions, click on one of the links below.

Sco = ((raw_sco - min_sco)/(avg_sco - min_sco))/2 + 0.5
Prob = P(contact | Sco, seq80/√len)
seq80 = effective number of sequences, after reducing redundancy to 80% identity

Text file of predictions (all 3L/2 predictions)
Generate restraints for ROSETTA Structure Modeling
Upload PDB model overlay contacts on the model

HHsearch Results:

Legend: GREMLIN results (Prob ≥ 0.7) overlaid on top PDB hits. The grey/red filled circles underneath are pdb residue contacts (min distance < 5 Angstroms). The shade of the circles is based on the top 10 (or top 20 if e-value < 1E-20) HHsearch results which uses the overall probability and per-site alignment prob. Inter oligomeric contacts in the pdb are in shades of red.

PDB	Chains	Cov	%	HHΔ
4lhdA	2	0.9516	100	0.465	Contact Map
1wyuA	2	0.9495	100	0.588	Contact Map
1wyuB	2	0.9099	100	0.668	Contact Map
3mc6A	2	0.8286	100	0.75	Contact Map
3wcnA	2	0.8879	100	0.775	Contact Map
3hl2A	3	0.8374	100	0.794	Contact Map
3bc8A	3	0.8154	100	0.8	Contact Map
4obuE	2	0.8769	100	0.81	Contact Map
2z67A	4	0.8374	100	0.811	Contact Map
2jisA	2	0.9033	100	0.812	Contact Map

Sequence Conservation (Image Generated using WebLogo v3)

Legend: Color is used to show Hydrophobicity (Blue: Hydrophilic, Green: Neutral and Black: Hydrophobic). Amount of gaps is represented by width.

Page generated in 0.0119 seconds.