Q97ZH8 - SULSO - GREMLIN Contacts

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Q97ZH8 - Uncharacterized protein

UniProt:	Q97ZH8	Sequences: MSLQLPCEFSVREILPAVRSIVAQKLIKERNLSEYKAANLMGLTPAAVSNYLKSRRGSNLRSLLEKDEKFMDLVNEVTERILNSNSNLSVYYCILCSEGKKVLTKHGYALSPCLYETIVEPK	Download Alignment We filter this alignment to remove sites that have many gaps before running GREMLIN. Date: 2015_01
Length:	122 (100)
Sequences:	112 (94)
Seq/√Len:	9.4

SULSO - Q97ZH8

GREMLIN Results:

Legend: The darker and larger the blue dots, the higher coevolution strength.

Residue pairs sorted by coevolution strength:

i	j	Sco	Prob
27_I	37_A	3.019	0.92
7_C	93_C	2.768	0.88
93_C	96_C	2.700	0.86
31_N	84_S	2.362	0.77
43_L	46_A	2.352	0.77
19_R	47_A	2.331	0.76
80_R	91_Y	2.315	0.76
26_L	40_L	2.300	0.75
8_E	44_T	2.151	0.70
18_V	55_R	2.149	0.70
40_L	81_I	2.143	0.70
14_I	36_K	2.108	0.69
38_A	46_A	2.082	0.68
41_M	53_K	2.009	0.65
23_A	47_A	1.945	0.62
8_E	46_A	1.902	0.60
15_L	54_S	1.836	0.57
8_E	59_N	1.519	0.43
38_A	43_L	1.489	0.42
68_E	75_N	1.483	0.42
7_C	96_C	1.476	0.42
11_V	34_E	1.440	0.40
92_Y	95_L	1.402	0.38
47_A	50_N	1.378	0.37
68_E	79_E	1.354	0.36
22_V	74_V	1.344	0.36
72_D	79_E	1.314	0.35
21_I	78_T	1.289	0.34
47_A	57_G	1.281	0.34
45_P	54_S	1.244	0.32
35_Y	44_T	1.229	0.31
20_S	41_M	1.224	0.31
10_S	95_L	1.222	0.31
6_P	45_P	1.213	0.31
91_Y	94_I	1.208	0.31
24_Q	54_S	1.188	0.30
43_L	48_V	1.168	0.29
28_K	82_L	1.164	0.29
41_M	81_I	1.162	0.29
67_D	70_F	1.140	0.28
38_A	99_G	1.136	0.28
68_E	105_K	1.134	0.28
3_L	9_F	1.127	0.28
27_I	45_P	1.101	0.27
19_R	50_N	1.085	0.26
79_E	83_N	1.025	0.24
46_A	58_S	1.015	0.24
22_V	53_K	1.009	0.24
15_L	19_R	1.008	0.24
11_V	50_N	1.005	0.24
38_A	100_K	1.004	0.24
3_L	102_V	0.999	0.23
50_N	95_L	0.997	0.23
44_T	59_N	0.996	0.23
38_A	67_D	0.982	0.23
33_S	53_K	0.982	0.23
69_K	76_E	0.980	0.23
37_A	52_L	0.973	0.23
86_S	92_Y	0.963	0.22
14_I	69_K	0.951	0.22
7_C	31_N	0.931	0.21
73_L	76_E	0.924	0.21
17_A	52_L	0.921	0.21
23_A	99_G	0.916	0.21
34_E	50_N	0.915	0.21
46_A	64_L	0.914	0.21
10_S	46_A	0.913	0.21
5_L	9_F	0.908	0.21
6_P	12_R	0.907	0.21
7_C	10_S	0.899	0.20
3_L	81_I	0.881	0.20
37_A	45_P	0.875	0.20
33_S	92_Y	0.873	0.20
50_N	55_R	0.856	0.19
68_E	74_V	0.851	0.19
20_S	100_K	0.848	0.19
17_A	44_T	0.843	0.19
12_R	95_L	0.840	0.19
10_S	99_G	0.833	0.19
54_S	100_K	0.832	0.18
72_D	86_S	0.826	0.18
5_L	70_F	0.819	0.18
3_L	49_S	0.812	0.18
23_A	57_G	0.799	0.18
73_L	77_V	0.790	0.17
46_A	59_N	0.778	0.17
8_E	18_V	0.763	0.17
18_V	34_E	0.756	0.17
81_I	89_S	0.749	0.16
12_R	50_N	0.742	0.16
69_K	90_V	0.739	0.16
14_I	52_L	0.729	0.16
67_D	71_M	0.709	0.15
50_N	98_E	0.702	0.15
9_F	30_R	0.680	0.15
19_R	57_G	0.677	0.15
12_R	66_K	0.677	0.15
13_E	24_Q	0.674	0.15
45_P	64_L	0.671	0.15
64_L	77_V	0.669	0.15
72_D	76_E	0.657	0.14
19_R	51_Y	0.652	0.14
24_Q	52_L	0.643	0.14
25_K	41_M	0.642	0.14
17_A	59_N	0.638	0.14
11_V	26_L	0.637	0.14
31_N	93_C	0.633	0.14
5_L	33_S	0.629	0.14
68_E	86_S	0.628	0.14
41_M	58_S	0.627	0.14
90_V	101_K	0.626	0.14
18_V	69_K	0.626	0.14
22_V	101_K	0.626	0.14
3_L	55_R	0.615	0.13
75_N	94_I	0.607	0.13
53_K	70_F	0.605	0.13
53_K	66_K	0.603	0.13
43_L	59_N	0.599	0.13
37_A	48_V	0.599	0.13
4_Q	54_S	0.599	0.13
3_L	12_R	0.595	0.13
33_S	36_K	0.578	0.13
6_P	44_T	0.577	0.13
28_K	39_N	0.576	0.13
54_S	58_S	0.576	0.13
40_L	94_I	0.571	0.12
26_L	52_L	0.567	0.12
65_E	83_N	0.566	0.12
68_E	90_V	0.563	0.12
3_L	50_N	0.561	0.12
34_E	103_L	0.560	0.12
32_L	44_T	0.556	0.12
36_K	68_E	0.543	0.12
11_V	48_V	0.543	0.12
76_E	83_N	0.541	0.12
8_E	32_L	0.531	0.12
65_E	71_M	0.529	0.12
55_R	74_V	0.529	0.12
18_V	78_T	0.524	0.12
7_C	15_L	0.524	0.12
28_K	72_D	0.523	0.12
46_A	103_L	0.522	0.12
12_R	73_L	0.509	0.11
28_K	37_A	0.508	0.11
27_I	47_A	0.505	0.11
37_A	42_G	0.505	0.11
10_S	35_Y	0.504	0.11
95_L	103_L	0.503	0.11
53_K	64_L	0.503	0.11
4_Q	95_L	0.500	0.11

Legend: The i and j are positions as given in the UniProt sequence. Only predictions with Prob ≥ 0.7 are listed. For all 3L/2 predictions, click on one of the links below.

Sco = ((raw_sco - min_sco)/(avg_sco - min_sco))/2 + 0.5
Prob = P(contact | Sco, seq80/√len)
seq80 = effective number of sequences, after reducing redundancy to 80% identity

Text file of predictions (all 3L/2 predictions)
Generate restraints for ROSETTA Structure Modeling
Upload PDB model overlay contacts on the model

HHsearch Results:

Legend: GREMLIN results (Prob ≥ 0.7) overlaid on top PDB hits. The grey/red filled circles underneath are pdb residue contacts (min distance < 5 Angstroms). The shade of the circles is based on the top 10 (or top 20 if e-value < 1E-20) HHsearch results which uses the overall probability and per-site alignment prob. Inter oligomeric contacts in the pdb are in shades of red.

PDB	Chains	Cov	%	HHΔ
2cw1A	1	0.4672	97.9	0.815	Contact Map
2pijA	2	0.4918	97.1	0.843	Contact Map
2w7nA	2	0.6721	97	0.844	Contact Map
2xi8A	2	0.541	97	0.844	Contact Map
2ef8A	2	0.6311	96.9	0.846	Contact Map
3bs3A	2	0.5082	96.9	0.846	Contact Map
1r69A	1	0.5164	96.8	0.848	Contact Map
1zugA	1	0.582	96.8	0.849	Contact Map
1zx4A	2	0.8934	96.8	0.849	Contact Map
3eusA	2	0.6639	96.7	0.85	Contact Map

Sequence Conservation (Image Generated using WebLogo v3)

Legend: Color is used to show Hydrophobicity (Blue: Hydrophilic, Green: Neutral and Black: Hydrophobic). Amount of gaps is represented by width.

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