Q97ZG6 - SULSO - GREMLIN Contacts

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Q97ZG6 - Uncharacterized protein

UniProt:	Q97ZG6	Sequences: MFISFVEYLLIDAGGTSTKVFVHDGEKIVRQYKYEPASVDKVGPYKSVLRLSNIVSIFNKKFDRIAISLAGIDSEVMAKEVKGQLYPRLSKYADKVIIEHDAHVVLMSNADKGCITIAGTGSIVYGFDGSQRIIKGDRGWLVGDICSGFWLGREFLHELLREFQGLSNDRSLTQFSTFKTEEDLVRFLYKNSCNPAKIAQFSVNLLNAIRQNNIKAIRILNNCMSEFSTLVQMVCKAVNSNVVYYFGGMYESPVYVSFFKRELEKKGIKSVKSRSVINGLLRLLEL	Download Alignment We filter this alignment to remove sites that have many gaps before running GREMLIN. Date: 2015_01
Length:	286 (255)
Sequences:	2596 (1973)
Seq/√Len:	123.5

SULSO - Q97ZG6 Q97U07

GREMLIN Results:

Legend: The darker and larger the blue dots, the higher coevolution strength.

Residue pairs sorted by coevolution strength:

i	j	Sco	Prob
24_D	27_K	4.903	1.00
68_S	104_V	3.347	1.00
256_V	260_K	3.321	1.00
154_E	222_N	2.859	1.00
112_K	128_D	2.789	1.00
122_S	136_G	2.725	1.00
150_W	223_C	2.575	1.00
135_K	234_V	2.558	1.00
155_F	205_L	2.527	1.00
224_M	228_S	2.409	1.00
225_S	262_E	2.407	1.00
158_E	215_K	2.380	1.00
73_D	100_H	2.314	1.00
82_K	86_Y	2.312	1.00
54_I	58_F	2.229	1.00
128_D	131_Q	2.188	1.00
170_R	213_N	2.175	1.00
154_E	157_H	2.160	1.00
150_W	154_E	2.138	1.00
151_L	219_I	2.117	1.00
32_Y	54_I	2.029	1.00
124_V	230_L	2.028	1.00
116_T	124_V	2.007	1.00
175_F	207_N	1.958	1.00
102_A	123_I	1.935	1.00
171_S	208_A	1.920	1.00
151_L	223_C	1.895	1.00
21_F	31_Q	1.886	1.00
126_G	238_V	1.880	1.00
30_R	58_F	1.877	1.00
151_L	249_M	1.876	1.00
180_T	183_D	1.836	1.00
11_I	67_I	1.818	1.00
118_A	227_F	1.785	1.00
123_I	134_I	1.779	1.00
179_K	183_D	1.772	1.00
13_A	37_A	1.770	1.00
142_V	160_L	1.769	1.00
148_G	249_M	1.727	1.00
38_S	70_A	1.716	1.00
221_N	258_F	1.710	1.00
20_V	54_I	1.699	1.00
13_A	69_L	1.690	1.00
206_L	220_L	1.666	1.00
148_G	206_L	1.658	1.00
116_T	227_F	1.626	1.00
79_K	83_G	1.598	1.00
140_W	195_P	1.598	1.00
226_E	229_T	1.584	1.00
257_S	261_R	1.582	1.00
66_A	99_E	1.572	1.00
249_M	255_Y	1.570	1.00
22_V	62_F	1.538	1.00
156_L	160_L	1.520	1.00
116_T	231_V	1.508	1.00
32_Y	58_F	1.494	1.00
217_I	221_N	1.484	1.00
53_N	57_I	1.482	1.00
9_L	55_V	1.475	1.00
188_L	198_I	1.459	1.00
109_N	244_Y	1.456	1.00
64_R	95_K	1.450	1.00
72_I	98_I	1.430	1.00
105_V	115_I	1.429	1.00
253_P	257_S	1.410	1.00
52_S	56_S	1.408	1.00
151_L	205_L	1.407	1.00
158_E	219_I	1.398	1.00
46_K	49_L	1.393	1.00
218_R	222_N	1.382	1.00
124_V	234_V	1.371	1.00
19_K	33_K	1.355	1.00
167_S	170_R	1.343	1.00
112_K	129_G	1.318	1.00
49_L	53_N	1.307	1.00
145_I	157_H	1.305	1.00
114_C	243_V	1.295	1.00
117_I	123_I	1.272	1.00
203_V	207_N	1.263	1.00
34_Y	54_I	1.261	1.00
9_L	22_V	1.254	1.00
48_V	52_S	1.252	1.00
120_T	199_A	1.249	1.00
140_W	149_F	1.243	0.99
99_E	103_H	1.241	0.99
16_T	120_T	1.216	0.99
9_L	65_I	1.211	0.99
262_E	265_K	1.208	0.99
23_H	28_I	1.208	0.99
138_R	164_Q	1.208	0.99
162_E	170_R	1.199	0.99
209_I	212_N	1.195	0.99
35_E	50_R	1.191	0.99
149_F	198_I	1.185	0.99
187_F	191_N	1.184	0.99
124_V	135_K	1.179	0.99
116_T	230_L	1.178	0.99
118_A	146_C	1.177	0.99
176_S	201_F	1.176	0.99
159_L	173_T	1.169	0.99
15_G	38_S	1.160	0.99
136_G	230_L	1.157	0.99
208_A	216_A	1.154	0.99
169_D	173_T	1.152	0.99
153_R	157_H	1.135	0.99
43_G	46_K	1.130	0.99
232_Q	266_K	1.116	0.99
248_G	252_S	1.107	0.99
20_V	32_Y	1.105	0.99
158_E	218_R	1.094	0.99
163_F	181_E	1.087	0.99
54_I	57_I	1.086	0.99
224_M	258_F	1.084	0.99
46_K	50_R	1.082	0.99
17_S	33_K	1.080	0.99
167_S	213_N	1.078	0.99
158_E	167_S	1.078	0.99
105_V	117_I	1.073	0.98
222_N	225_S	1.067	0.98
114_C	231_V	1.066	0.98
13_A	18_T	1.062	0.98
104_V	108_S	1.054	0.98
166_L	233_M	1.051	0.98
208_A	212_N	1.050	0.98
221_N	262_E	1.044	0.98
75_E	78_A	1.042	0.98
47_S	50_R	1.040	0.98
245_Y	259_F	1.036	0.98
150_W	226_E	1.029	0.98
197_K	200_Q	1.022	0.98
228_S	263_L	1.016	0.98
250_Y	259_F	1.011	0.98
44_P	80_E	1.002	0.98
15_G	20_V	0.996	0.98
68_S	137_D	0.993	0.97
205_L	216_A	0.992	0.97
105_V	246_F	0.991	0.97
202_S	205_L	0.986	0.97
248_G	251_E	0.983	0.97
209_I	220_L	0.976	0.97
223_C	226_E	0.974	0.97
73_D	77_M	0.971	0.97
157_H	161_R	0.963	0.97
75_E	79_K	0.960	0.97
116_T	259_F	0.958	0.97
50_R	54_I	0.950	0.97
15_G	70_A	0.948	0.97
258_F	262_E	0.948	0.97
35_E	54_I	0.944	0.97
224_M	259_F	0.936	0.96
206_L	249_M	0.932	0.96
149_F	195_P	0.929	0.96
65_I	89_L	0.927	0.96
149_F	199_A	0.927	0.96
16_T	196_A	0.925	0.96
148_G	152_G	0.921	0.96
200_Q	203_V	0.916	0.96
15_G	120_T	0.916	0.96
178_F	184_L	0.912	0.96
74_S	77_M	0.905	0.96
165_G	233_M	0.904	0.96
32_Y	50_R	0.904	0.96
28_I	31_Q	0.901	0.96
83_G	87_P	0.895	0.95
66_A	104_V	0.890	0.95
228_S	262_E	0.882	0.95
186_R	191_N	0.877	0.95
156_L	198_I	0.876	0.95
9_L	62_F	0.876	0.95
20_V	34_Y	0.870	0.95
249_M	252_S	0.870	0.95
122_S	145_I	0.867	0.95
177_T	183_D	0.867	0.95
124_V	143_G	0.866	0.94
84_Q	87_P	0.864	0.94
8_Y	64_R	0.864	0.94
162_E	173_T	0.863	0.94
139_G	143_G	0.863	0.94
106_L	127_F	0.855	0.94
100_H	123_I	0.853	0.94
127_F	132_R	0.847	0.94
262_E	266_K	0.847	0.94
167_S	215_K	0.840	0.94
159_L	213_N	0.838	0.93
181_E	185_V	0.836	0.93
221_N	261_R	0.836	0.93
166_L	170_R	0.833	0.93
10_L	64_R	0.829	0.93
34_Y	50_R	0.828	0.93
11_I	20_V	0.825	0.93
122_S	147_S	0.824	0.93
50_R	53_N	0.817	0.93
22_V	58_F	0.812	0.92
138_R	160_L	0.811	0.92
16_T	248_G	0.810	0.92
118_A	250_Y	0.809	0.92
224_M	255_Y	0.808	0.92
140_W	153_R	0.805	0.92
259_F	263_L	0.802	0.92
222_N	226_E	0.799	0.92
169_D	174_Q	0.798	0.92
39_V	77_M	0.793	0.91
148_G	199_A	0.791	0.91
37_A	47_S	0.791	0.91
257_S	260_K	0.790	0.91
107_M	110_A	0.789	0.91
39_V	43_G	0.784	0.91
85_L	89_L	0.784	0.91
232_Q	236_K	0.782	0.91
255_Y	258_F	0.782	0.91
161_R	226_E	0.780	0.91
35_E	38_S	0.779	0.91
160_L	164_Q	0.779	0.91
141_L	153_R	0.778	0.91
18_T	37_A	0.776	0.91
195_P	198_I	0.776	0.91
20_V	30_R	0.775	0.91
66_A	107_M	0.772	0.90
221_N	225_S	0.767	0.90
135_K	230_L	0.766	0.90
258_F	261_R	0.766	0.90
40_D	77_M	0.752	0.89
118_A	122_S	0.751	0.89
105_V	113_G	0.750	0.89
168_N	214_I	0.749	0.89
42_V	46_K	0.747	0.89
48_V	87_P	0.746	0.89
154_E	226_E	0.745	0.89
218_R	221_N	0.744	0.89
20_V	58_F	0.742	0.89
86_Y	92_Y	0.741	0.88
194_N	197_K	0.741	0.88
136_G	145_I	0.736	0.88
8_Y	24_D	0.735	0.88
191_N	197_K	0.732	0.88
38_S	41_K	0.732	0.88
47_S	51_L	0.729	0.88
230_L	234_V	0.728	0.88
231_V	259_F	0.728	0.88
49_L	218_R	0.727	0.87
65_I	93_A	0.726	0.87
159_L	172_L	0.722	0.87
155_F	201_F	0.705	0.86
118_A	249_M	0.704	0.86
141_L	149_F	0.702	0.86
155_F	208_A	0.701	0.86
73_D	134_I	0.700	0.85
108_S	244_Y	0.700	0.85
19_K	31_Q	0.699	0.85
30_R	54_I	0.697	0.85
254_V	257_S	0.696	0.85
155_F	216_A	0.694	0.85
233_M	237_A	0.688	0.84
34_Y	58_F	0.688	0.84
45_Y	84_Q	0.684	0.84
206_L	252_S	0.683	0.84
260_K	264_E	0.683	0.84
8_Y	23_H	0.681	0.84
229_T	266_K	0.678	0.84
215_K	218_R	0.677	0.84
104_V	115_I	0.677	0.84
79_K	82_K	0.672	0.83
160_L	163_F	0.670	0.83
17_S	117_I	0.669	0.83
116_T	245_Y	0.664	0.82
106_L	110_A	0.662	0.82
10_L	68_S	0.658	0.82
52_S	88_R	0.654	0.81
126_G	234_V	0.653	0.81
133_I	237_A	0.650	0.81
109_N	246_F	0.649	0.81
255_Y	260_K	0.648	0.81
209_I	216_A	0.644	0.80
145_I	153_R	0.643	0.80
261_R	265_K	0.642	0.80
48_V	88_R	0.642	0.80
13_A	122_S	0.640	0.80
182_E	187_F	0.637	0.80
159_L	170_R	0.636	0.80
21_F	28_I	0.634	0.79
221_N	224_M	0.629	0.79
123_I	246_F	0.628	0.79
118_A	147_S	0.627	0.79
263_L	266_K	0.626	0.78
64_R	97_I	0.626	0.78
207_N	210_R	0.623	0.78
12_D	17_S	0.621	0.78
14_G	120_T	0.617	0.77
114_C	126_G	0.616	0.77
114_C	235_C	0.614	0.77
161_R	166_L	0.611	0.77
184_L	198_I	0.611	0.77
103_H	127_F	0.610	0.77
99_E	104_V	0.609	0.77
44_P	83_G	0.608	0.76
186_R	189_Y	0.601	0.76
107_M	115_I	0.600	0.76
220_L	254_V	0.599	0.75
126_G	237_A	0.599	0.75
148_G	202_S	0.598	0.75
42_V	47_S	0.591	0.74
49_L	52_S	0.590	0.74
209_I	224_M	0.589	0.74
256_V	259_F	0.587	0.74
104_V	233_M	0.586	0.74
39_V	194_N	0.586	0.74
71_G	143_G	0.583	0.73
166_L	226_E	0.582	0.73
59_N	63_D	0.579	0.73
158_E	162_E	0.577	0.73
128_D	133_I	0.576	0.73
45_Y	192_S	0.575	0.72
103_H	125_Y	0.573	0.72
142_V	189_Y	0.572	0.72
221_N	254_V	0.571	0.72
76_V	80_E	0.571	0.72
70_A	106_L	0.567	0.71
163_F	182_E	0.566	0.71
68_S	123_I	0.564	0.71
175_F	200_Q	0.563	0.71
184_L	187_F	0.562	0.71
109_N	115_I	0.561	0.71
171_S	174_Q	0.561	0.71
104_V	165_G	0.560	0.70
125_Y	132_R	0.560	0.70
209_I	217_I	0.560	0.70
81_V	84_Q	0.559	0.70
39_V	152_G	0.558	0.70
126_G	132_R	0.556	0.70
210_R	254_V	0.552	0.69
250_Y	255_Y	0.552	0.69
165_G	170_R	0.552	0.69
55_V	60_K	0.551	0.69
122_S	227_F	0.549	0.69
80_E	83_G	0.548	0.69
26_E	29_V	0.546	0.69
202_S	223_C	0.546	0.69
151_L	155_F	0.546	0.69
135_K	233_M	0.545	0.68
224_M	227_F	0.545	0.68
243_V	263_L	0.544	0.68
102_A	117_I	0.544	0.68
136_G	164_Q	0.543	0.68
62_F	248_G	0.541	0.68
32_Y	35_E	0.540	0.68
156_L	161_R	0.540	0.68
63_D	95_K	0.535	0.67
159_L	176_S	0.535	0.67
10_L	107_M	0.535	0.67
142_V	156_L	0.534	0.67
202_S	249_M	0.533	0.67
22_V	60_K	0.533	0.67
85_L	88_R	0.530	0.66
12_D	16_T	0.529	0.66
46_K	61_K	0.527	0.66
66_A	97_I	0.525	0.66
39_V	123_I	0.524	0.65
253_P	256_V	0.522	0.65
231_V	235_C	0.522	0.65
162_E	169_D	0.521	0.65
75_E	82_K	0.521	0.65
259_F	262_E	0.521	0.65
37_A	70_A	0.521	0.65
51_L	54_I	0.520	0.65
63_D	94_D	0.518	0.65
220_L	224_M	0.517	0.64
245_Y	250_Y	0.516	0.64
202_S	220_L	0.516	0.64
196_A	204_N	0.516	0.64
254_V	263_L	0.514	0.64
16_T	199_A	0.514	0.64
225_S	229_T	0.513	0.64
155_F	159_L	0.511	0.63
89_L	93_A	0.510	0.63
95_K	171_S	0.508	0.63
87_P	177_T	0.507	0.63
27_K	87_P	0.506	0.63
68_S	136_G	0.503	0.62
21_F	107_M	0.503	0.62
52_S	55_V	0.503	0.62
204_N	208_A	0.502	0.62
125_Y	131_Q	0.500	0.62

Legend: The i and j are positions as given in the UniProt sequence. Only predictions with Prob ≥ 0.7 are listed. For all 3L/2 predictions, click on one of the links below.

Sco = ((raw_sco - min_sco)/(avg_sco - min_sco))/2 + 0.5
Prob = P(contact | Sco, seq80/√len)
seq80 = effective number of sequences, after reducing redundancy to 80% identity

Text file of predictions (all 3L/2 predictions)
Generate restraints for ROSETTA Structure Modeling
Upload PDB model overlay contacts on the model

HHsearch Results:

Legend: GREMLIN results (Prob ≥ 0.7) overlaid on top PDB hits. The grey/red filled circles underneath are pdb residue contacts (min distance < 5 Angstroms). The shade of the circles is based on the top 10 (or top 20 if e-value < 1E-20) HHsearch results which uses the overall probability and per-site alignment prob. Inter oligomeric contacts in the pdb are in shades of red.

PDB	Chains	Cov	%	HHΔ
2ch5A	2	0.986	100	0.495	Contact Map
2e2oA	2	0.9615	100	0.513	Contact Map
1zbsA	2	0.9336	100	0.525	Contact Map
1zxoA	4	0.9336	100	0.534	Contact Map
1zc6A	2	0.9301	100	0.54	Contact Map
2ap1A	2	0.9266	99.9	0.633	Contact Map
2yhwA	2	0.9126	99.9	0.645	Contact Map
4db3A	2	0.9021	99.9	0.647	Contact Map
3r8eA	2	0.9056	99.9	0.653	Contact Map
3vglA	3	0.9161	99.9	0.655	Contact Map

Sequence Conservation (Image Generated using WebLogo v3)

Legend: Color is used to show Hydrophobicity (Blue: Hydrophilic, Green: Neutral and Black: Hydrophobic). Amount of gaps is represented by width.

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