Q97ZG5 - SULSO - GREMLIN Contacts

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Q97ZG5 - Uncharacterized protein

UniProt:	Q97ZG5	Sequences: MLELAKGILIAEDLPALYVKQANSVVLSDVHIGYEEEMSRKGIYIPRIQKKRFFTITNRVLSVFNTKKLIVNGDFKHTFEKLTRQEKEELNEILKYLKDNGVEVTIVRGNHDNYISLVTERFDNVKLVDELDLGEILITHGHKVVEPRNNTTYIIGHEHPRISIRDKLGFSRKLQCFLSIPIKERENSQVIVLPAIGIYQAGNDISLIHSNYMSNLIKEHTILEKAKPYIIIEGEGIMEFPELGLIKNVLI	Download Alignment We filter this alignment to remove sites that have many gaps before running GREMLIN. Date: 2015_01
Length:	251 (196)
Sequences:	952 (693)
Seq/√Len:	49.5

HALSA - Q9HQA4
SULSO - Q97ZG5

GREMLIN Results:

Legend: The darker and larger the blue dots, the higher coevolution strength.

Residue pairs sorted by coevolution strength:

i	j	Sco	Prob
26_V	138_I	5.203	1.00
161_R	173_K	4.258	1.00
23_N	67_K	4.045	1.00
161_R	202_G	3.684	1.00
24_S	70_I	3.405	1.00
152_T	191_I	3.350	1.00
142_H	155_I	3.260	1.00
69_L	104_V	3.213	1.00
19_V	22_A	2.973	1.00
68_K	103_E	2.661	1.00
163_S	171_S	2.587	1.00
27_L	57_T	2.477	1.00
14_L	63_V	2.399	1.00
12_E	64_F	2.349	1.00
16_A	60_V	2.319	1.00
68_K	105_T	2.307	1.00
197_G	200_Q	2.237	1.00
14_L	60_V	2.188	1.00
70_I	138_I	2.134	1.00
24_S	68_K	2.117	1.00
22_A	133_L	2.115	1.00
72_N	138_I	2.110	1.00
7_G	21_Q	2.041	1.00
53_F	197_G	2.027	1.00
11_A	17_L	1.978	0.99
107_V	128_V	1.969	0.99
57_T	196_I	1.856	0.99
71_V	75_F	1.852	0.99
195_A	200_Q	1.844	0.99
60_V	196_I	1.794	0.99
158_E	192_V	1.776	0.99
68_K	133_L	1.707	0.98
34_Y	200_Q	1.648	0.98
69_L	102_V	1.635	0.98
32_I	53_F	1.633	0.98
56_I	196_I	1.594	0.98
161_R	204_D	1.591	0.98
98_K	102_V	1.578	0.97
104_V	125_V	1.553	0.97
18_Y	23_N	1.527	0.97
132_D	151_T	1.527	0.97
38_M	43_I	1.525	0.97
142_H	158_E	1.502	0.96
94_L	97_L	1.484	0.96
69_L	205_I	1.481	0.96
178_L	192_V	1.470	0.96
58_N	96_Y	1.438	0.95
152_T	179_S	1.413	0.95
61_L	66_T	1.402	0.95
9_L	19_V	1.341	0.93
19_V	133_L	1.340	0.93
136_I	152_T	1.334	0.93
70_I	105_T	1.317	0.93
158_E	161_R	1.315	0.93
93_I	96_Y	1.305	0.92
152_T	187_N	1.293	0.92
15_P	56_I	1.286	0.92
17_L	191_I	1.283	0.92
139_T	153_Y	1.270	0.91
12_E	15_P	1.265	0.91
72_N	197_G	1.255	0.91
103_E	129_D	1.245	0.91
6_K	135_E	1.232	0.90
49_Q	53_F	1.213	0.89
52_R	198_I	1.208	0.89
25_V	60_V	1.202	0.89
165_R	171_S	1.197	0.89
18_Y	64_F	1.197	0.89
10_I	20_K	1.173	0.88
39_S	44_Y	1.157	0.87
26_V	70_I	1.153	0.87
36_E	78_T	1.137	0.86
161_R	195_A	1.131	0.86
9_L	155_I	1.131	0.86
81_K	199_Y	1.116	0.85
105_T	128_V	1.111	0.85
179_S	191_I	1.096	0.84
136_I	191_I	1.063	0.82
78_T	113_N	1.061	0.82
19_V	138_I	1.050	0.81
40_R	187_N	1.049	0.81
36_E	49_Q	1.048	0.81
35_E	199_Y	1.034	0.80
127_L	130_E	1.033	0.80
136_I	154_I	1.032	0.80
9_L	26_V	0.988	0.77
79_F	114_Y	0.986	0.77
60_V	64_F	0.984	0.77
94_L	102_V	0.974	0.76
111_H	157_H	0.974	0.76
34_Y	201_A	0.970	0.76
40_R	176_C	0.962	0.75
34_Y	38_M	0.961	0.75
9_L	136_I	0.943	0.74
108_R	129_D	0.936	0.73
31_H	111_H	0.934	0.73
155_I	158_E	0.929	0.73
36_E	39_S	0.927	0.72
58_N	62_S	0.922	0.72
34_Y	76_K	0.921	0.72
7_G	134_G	0.917	0.72
5_A	8_I	0.911	0.71
197_G	201_A	0.910	0.71
65_N	135_E	0.909	0.71
196_I	199_Y	0.905	0.71
61_L	108_R	0.900	0.70
158_E	173_K	0.896	0.70
67_K	143_K	0.896	0.70
31_H	157_H	0.889	0.69
35_E	118_V	0.886	0.69
40_R	171_S	0.883	0.69
141_G	192_V	0.882	0.69
10_I	18_Y	0.875	0.68
54_F	195_A	0.871	0.68
9_L	135_E	0.868	0.67
89_E	92_E	0.866	0.67
107_V	129_D	0.858	0.66
176_C	201_A	0.840	0.65
133_L	208_I	0.839	0.65
49_Q	75_F	0.838	0.65
104_V	141_G	0.838	0.65
28_S	108_R	0.835	0.64
38_M	77_H	0.833	0.64
33_G	49_Q	0.830	0.64
92_E	133_L	0.827	0.64
11_A	175_Q	0.826	0.64
39_S	200_Q	0.825	0.63
193_L	200_Q	0.822	0.63
144_V	164_I	0.820	0.63
177_F	191_I	0.813	0.62
173_K	204_D	0.808	0.62
5_A	171_S	0.802	0.61
12_E	16_A	0.793	0.60
21_Q	67_K	0.793	0.60
132_D	135_E	0.789	0.60
155_I	190_V	0.788	0.60
74_D	140_H	0.784	0.59
15_P	197_G	0.783	0.59
5_A	89_E	0.780	0.59
55_T	62_S	0.778	0.59
88_E	92_E	0.775	0.59
32_I	197_G	0.772	0.58
46_P	77_H	0.771	0.58
18_Y	136_I	0.768	0.58
92_E	96_Y	0.765	0.58
154_I	193_L	0.763	0.57
61_L	102_V	0.762	0.57
37_E	77_H	0.755	0.57
95_K	99_D	0.750	0.56
142_H	173_K	0.750	0.56
164_I	202_G	0.739	0.55
59_R	63_V	0.736	0.55
158_E	203_N	0.735	0.55
35_E	38_M	0.731	0.54
62_S	132_D	0.730	0.54
17_L	67_K	0.730	0.54
61_L	97_L	0.724	0.53
78_T	203_N	0.721	0.53
93_I	97_L	0.719	0.53
138_I	154_I	0.709	0.52
50_K	72_N	0.707	0.52
52_R	56_I	0.707	0.52
44_Y	199_Y	0.706	0.52
98_K	104_V	0.705	0.52
33_G	36_E	0.705	0.52
14_L	177_F	0.704	0.51
32_I	71_V	0.703	0.51
165_R	204_D	0.700	0.51
49_Q	78_T	0.699	0.51
5_A	205_I	0.697	0.51
154_I	191_I	0.695	0.50
98_K	120_E	0.691	0.50
105_T	131_L	0.687	0.50
39_S	48_I	0.687	0.50
74_D	111_H	0.686	0.50
33_G	85_Q	0.684	0.49
111_H	140_H	0.684	0.49
119_T	122_F	0.680	0.49
16_A	27_L	0.679	0.49
54_F	201_A	0.678	0.49
158_E	188_S	0.676	0.49
27_L	146_E	0.676	0.49
34_Y	174_L	0.673	0.48
62_S	97_L	0.670	0.48
36_E	108_R	0.669	0.48
5_A	189_Q	0.665	0.47
90_L	94_L	0.664	0.47
125_V	174_L	0.664	0.47
24_S	138_I	0.658	0.47
78_T	106_I	0.657	0.47
27_L	51_K	0.657	0.47
28_S	193_L	0.657	0.47
74_D	109_G	0.656	0.47
109_G	140_H	0.653	0.46
34_Y	197_G	0.652	0.46
95_K	146_E	0.648	0.46
112_D	157_H	0.647	0.46
28_S	56_I	0.647	0.46
27_L	53_F	0.642	0.45
33_G	84_R	0.639	0.45
35_E	141_G	0.638	0.45
22_A	134_G	0.633	0.44
59_R	147_P	0.631	0.44
108_R	118_V	0.630	0.44
34_Y	54_F	0.629	0.44
176_C	200_Q	0.628	0.44
62_S	67_K	0.627	0.44
13_D	63_V	0.627	0.44
37_E	122_F	0.627	0.44
103_E	126_K	0.626	0.43
89_E	164_I	0.625	0.43
75_F	174_L	0.625	0.43
46_P	103_E	0.624	0.43
31_H	112_D	0.618	0.43
53_F	141_G	0.616	0.42
36_E	50_K	0.616	0.42
10_I	64_F	0.616	0.42
33_G	179_S	0.614	0.42
26_V	137_L	0.613	0.42
28_S	71_V	0.609	0.42
21_Q	129_D	0.605	0.41
30_V	203_N	0.604	0.41
97_L	104_V	0.601	0.41
31_H	74_D	0.599	0.41
31_H	140_H	0.597	0.41
34_Y	39_S	0.593	0.40
174_L	201_A	0.593	0.40
67_K	92_E	0.592	0.40
74_D	157_H	0.592	0.40
7_G	22_A	0.591	0.40
140_H	157_H	0.589	0.40
136_I	165_R	0.585	0.39
201_A	213_M	0.584	0.39
69_L	80_E	0.582	0.39
50_K	155_I	0.579	0.39
92_E	95_K	0.578	0.39
206_S	212_Y	0.575	0.38
26_V	72_N	0.571	0.38
132_D	147_P	0.571	0.38
187_N	192_V	0.570	0.38
53_F	72_N	0.570	0.38
75_F	153_Y	0.568	0.38
45_I	203_N	0.567	0.38
22_A	68_K	0.567	0.38
71_V	104_V	0.567	0.38
75_F	108_R	0.566	0.38
134_G	143_K	0.564	0.37
130_E	139_T	0.563	0.37
89_E	207_L	0.563	0.37
55_T	96_Y	0.562	0.37
97_L	102_V	0.562	0.37
45_I	83_T	0.561	0.37
89_E	163_S	0.558	0.37
21_Q	151_T	0.556	0.37
108_R	114_Y	0.553	0.36
35_E	49_Q	0.549	0.36
139_T	195_A	0.544	0.36
167_K	170_F	0.543	0.35
18_Y	61_L	0.541	0.35
67_K	193_L	0.540	0.35
175_Q	195_A	0.540	0.35
85_Q	96_Y	0.539	0.35
36_E	90_L	0.537	0.35
25_V	57_T	0.534	0.35
83_T	86_E	0.533	0.34
57_T	132_D	0.533	0.34
5_A	10_I	0.532	0.34
74_D	112_D	0.532	0.34
33_G	90_L	0.530	0.34
112_D	140_H	0.529	0.34
58_N	93_I	0.529	0.34
108_R	128_V	0.527	0.34
72_N	155_I	0.523	0.34
132_D	137_L	0.520	0.33
66_T	119_T	0.520	0.33
7_G	19_V	0.519	0.33
106_I	127_L	0.518	0.33
63_V	192_V	0.516	0.33
65_N	189_Q	0.514	0.33
40_R	82_L	0.512	0.33
73_G	159_H	0.512	0.33
17_L	98_K	0.511	0.32
137_L	147_P	0.510	0.32
88_E	98_K	0.510	0.32
135_E	152_T	0.509	0.32
67_K	95_K	0.508	0.32
80_E	83_T	0.507	0.32
10_I	55_T	0.505	0.32
27_L	103_E	0.505	0.32
33_G	39_S	0.504	0.32
97_L	119_T	0.504	0.32
35_E	50_K	0.504	0.32
28_S	106_I	0.501	0.32
7_G	11_A	0.500	0.32

Legend: The i and j are positions as given in the UniProt sequence. Only predictions with Prob ≥ 0.7 are listed. For all 3L/2 predictions, click on one of the links below.

Sco = ((raw_sco - min_sco)/(avg_sco - min_sco))/2 + 0.5
Prob = P(contact | Sco, seq80/√len)
seq80 = effective number of sequences, after reducing redundancy to 80% identity

Text file of predictions (all 3L/2 predictions)
Generate restraints for ROSETTA Structure Modeling
Upload PDB model overlay contacts on the model

HHsearch Results:

Legend: GREMLIN results (Prob ≥ 0.7) overlaid on top PDB hits. The grey/red filled circles underneath are pdb residue contacts (min distance < 5 Angstroms). The shade of the circles is based on the top 10 (or top 20 if e-value < 1E-20) HHsearch results which uses the overall probability and per-site alignment prob. Inter oligomeric contacts in the pdb are in shades of red.

PDB	Chains	Cov	%	HHΔ
1xm7A	1	0.6454	99.4	0.801	Contact Map
1su1A	3	0.6813	99.3	0.815	Contact Map
4nzvA	1	0.8845	99.3	0.816	Contact Map
3thoB	2	0.8247	99.2	0.821	Contact Map
2a22A	1	0.7131	99.1	0.83	Contact Map
1z2wA	2	0.6693	99.1	0.834	Contact Map
2yvtA	1	0.6335	99	0.834	Contact Map
1ii7A	2	0.8645	99	0.835	Contact Map
1s3lA	1	0.5936	99	0.835	Contact Map
3av0A	1	0.8765	99	0.838	Contact Map

Sequence Conservation (Image Generated using WebLogo v3)

Legend: Color is used to show Hydrophobicity (Blue: Hydrophilic, Green: Neutral and Black: Hydrophobic). Amount of gaps is represented by width.

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