GREMLIN Database
Q97ZF3 - ATP-dependent helicase
UniProt: Q97ZF3 Sequences:
Download Alignment
We filter this alignment to remove sites that have many gaps before running GREMLIN.

Date: 2015_01
Length: 933 (761)
Sequences: 1409 (827)
Seq/√Len: 30.0

GREMLIN Results:

Legend: The darker and larger the blue dots, the higher coevolution strength.

Residue pairs sorted by coevolution strength:
i j Sco Prob
419_L423_L5.6611.00
380_D421_K5.0421.00
405_F419_L4.9391.00
560_E598_R4.7531.00
36_Y208_K4.3081.00
148_V169_L4.1321.00
91_A98_V4.1051.00
174_Y410_G4.0111.00
405_F422_L3.8661.00
173_K182_R3.7341.00
402_E419_L3.7081.00
400_S403_E3.5671.00
671_I728_L3.4661.00
389_I404_I3.3931.00
238_A241_I3.3851.00
405_F409_R3.3811.00
479_F525_I3.3591.00
412_Y415_R3.3481.00
241_I244_L3.3281.00
10_R14_E3.2631.00
111_N115_K3.2401.00
730_F739_I3.2001.00
142_Y145_V3.1951.00
163_T414_Y3.1931.00
225_L228_D3.1901.00
733_R738_K3.1871.00
240_K244_L3.1321.00
418_E421_K3.1181.00
233_L236_S3.1141.00
600_V740_K3.1011.00
232_A236_S3.0231.00
767_L770_T3.0211.00
250_L316_I2.9971.00
667_D735_R2.8521.00
514_K528_T2.8331.00
194_K197_Q2.7671.00
56_I149_V2.7481.00
391_G466_F2.6971.00
597_S600_V2.6971.00
106_P109_E2.6531.00
291_G295_N2.6441.00
237_A241_I2.5971.00
516_L528_T2.5931.00
99_N109_E2.5881.00
140_E143_K2.5691.00
200_F207_M2.5600.99
771_I774_A2.5210.99
230_S233_L2.5010.99
613_T616_I2.4890.99
108_K112_L2.4870.99
153_I195_V2.4850.99
167_I408_I2.4750.99
250_L303_C2.4690.99
385_V408_I2.4500.99
419_L422_L2.4500.99
174_Y403_E2.4240.99
421_K711_K2.4130.99
601_I612_Y2.4040.99
241_I245_I2.4000.99
35_G181_Q2.3830.99
41_I192_E2.3830.99
192_E195_V2.3660.99
224_K228_D2.3380.99
240_K245_I2.3080.99
770_T774_A2.3020.99
386_A425_L2.2890.99
150_V199_L2.2830.99
97_L119_H2.2750.99
193_D209_I2.2360.99
232_A235_K2.2040.98
658_L661_D2.1970.98
176_I180_F2.1880.98
283_R287_N2.1560.98
553_N733_R2.1560.98
610_W614_V2.1460.98
323_R353_F2.1210.98
16_K89_W2.1010.98
84_L88_D2.0960.98
56_I70_V2.0900.98
262_L322_L2.0840.98
660_K664_N2.0760.98
292_E297_N2.0260.97
335_L348_G2.0180.97
424_D711_K2.0140.97
242_N269_L2.0080.97
450_K454_F2.0030.97
69_T119_H1.9990.97
67_P144_N1.9880.97
40_V51_A1.9660.97
37_N200_F1.9640.97
240_K243_Q1.9570.97
59_R146_K1.9570.97
71_I145_V1.9550.97
173_K180_F1.9420.96
350_I361_S1.9410.96
557_K561_N1.9380.96
223_N228_D1.9300.96
251_V603_V1.9190.96
216_R346_P1.9170.96
184_G199_L1.8980.96
237_A240_K1.8820.96
31_P38_T1.8790.96
582_I586_E1.8710.96
174_Y407_I1.8670.96
452_W456_R1.8540.95
198_F413_I1.8510.95
99_N118_P1.8440.95
242_N245_I1.8410.95
341_I344_G1.8410.95
380_D418_E1.8330.95
288_L292_E1.8280.95
173_K179_D1.8130.95
479_F518_I1.8060.95
69_T146_K1.7980.95
164_Q168_L1.7910.94
324_P360_E1.7830.94
505_I512_F1.7710.94
359_L581_I1.7670.94
237_A245_I1.7660.94
557_K598_R1.7570.94
194_K198_F1.7410.94
148_V172_L1.7410.94
616_I730_F1.7410.94
88_D92_S1.7390.93
381_G414_Y1.7360.93
628_L649_F1.7280.93
230_S236_S1.7270.93
715_R719_K1.7230.93
193_D196_A1.7190.93
563_N589_R1.7140.93
392_M397_Q1.7130.93
237_A244_L1.6950.93
216_R222_I1.6930.93
767_L772_Y1.6810.92
137_R140_E1.6790.92
195_V201_G1.6680.92
496_V525_I1.6520.92
163_T381_G1.6380.91
767_L774_A1.6350.91
23_R27_M1.6330.91
611_L616_I1.6270.91
452_W455_N1.6260.91
71_I148_V1.6150.91
588_Y749_S1.6130.91
9_L58_N1.6070.90
610_W615_V1.6050.90
392_M399_M1.6050.90
768_N771_I1.6010.90
767_L771_I1.5970.90
216_R225_L1.5910.90
28_S40_V1.5880.90
399_M404_I1.5860.90
216_R339_G1.5840.90
73_I128_L1.5680.89
392_M404_I1.5560.89
549_P616_I1.5560.89
389_I425_L1.5490.89
393_I455_N1.5380.88
113_R131_D1.5260.88
239_E269_L1.5250.88
16_K93_R1.5170.88
549_P729_E1.5170.88
611_L614_V1.5150.88
729_E732_R1.5140.88
515_V518_I1.5070.87
403_E406_N1.5060.87
553_N729_E1.5050.87
401_I423_L1.4920.87
195_V198_F1.4850.86
744_T748_G1.4820.86
366_L370_D1.4820.86
223_N226_G1.4740.86
382_L417_L1.4710.86
145_V148_V1.4690.86
53_L74_T1.4660.86
245_I300_A1.4660.86
366_L554_Y1.4650.86
21_L29_F1.4630.86
405_F423_L1.4610.86
246_E270_G1.4610.86
66_K119_H1.4570.85
27_M30_E1.4520.85
560_E599_D1.4480.85
170_E411_T1.4420.85
215_T218_F1.4400.85
610_W616_I1.4370.85
189_V301_V1.4300.84
386_A429_L1.4280.84
491_I496_V1.4250.84
129_E388_E1.4180.84
659_F662_I1.4150.84
217_N345_V1.4130.84
238_A244_L1.4090.83
148_V180_F1.4090.83
57_L120_I1.4080.83
628_L663_I1.4070.83
576_N579_E1.4040.83
500_V515_V1.3940.83
50_E86_R1.3890.83
511_K529_P1.3840.82
224_K227_N1.3830.82
219_E347_K1.3750.82
160_K383_D1.3730.82
388_E393_I1.3720.82
356_F584_I1.3710.82
691_I713_A1.3710.82
218_F222_I1.3690.82
170_E174_Y1.3660.81
406_N409_R1.3630.81
575_K579_E1.3610.81
192_E373_M1.3540.81
57_L506_I1.3480.81
229_N233_L1.3440.80
194_K200_F1.3400.80
605_N743_Y1.3380.80
113_R118_P1.3370.80
303_C469_F1.3370.80
429_L444_L1.3360.80
560_E597_S1.3330.80
21_L26_E1.3330.80
242_N246_E1.3260.79
129_E168_L1.3210.79
556_R598_R1.3190.79
401_I422_L1.3160.79
611_L615_V1.3160.79
5_L29_F1.3130.79
229_N232_A1.3080.79
658_L662_I1.3080.79
121_I338_S1.3070.78
146_K537_I1.3030.78
318_K349_E1.3000.78
220_I509_S1.2950.78
221_K349_E1.2890.77
244_L318_K1.2880.77
218_F225_L1.2870.77
243_Q246_E1.2870.77
131_D141_H1.2720.77
251_V300_A1.2710.76
771_I775_L1.2690.76
549_P726_K1.2650.76
770_T775_L1.2610.76
393_I399_M1.2600.76
600_V742_V1.2580.76
427_N431_K1.2550.76
281_V289_A1.2490.75
237_A242_N1.2480.75
62_K149_V1.2420.75
401_I446_Q1.2360.74
148_V182_R1.2350.74
37_N207_M1.2340.74
450_K453_R1.2270.74
480_S490_E1.2240.74
666_N735_R1.2180.73
627_I670_I1.2160.73
117_I302_V1.2140.73
359_L559_M1.2100.73
105_V110_K1.2080.73
41_I189_V1.2040.72
363_A367_S1.1990.72
329_S597_S1.1990.72
73_I595_I1.1980.72
657_D661_D1.1920.72
733_R739_I1.1860.71
176_I179_D1.1790.71
157_I189_V1.1790.71
560_E600_V1.1770.71
610_W613_T1.1770.71
189_V192_E1.1770.71
170_E410_G1.1750.71
106_P112_L1.1710.70
405_F417_L1.1650.70
618_E646_I1.1640.70
156_L159_S1.1630.70
492_D513_W1.1620.70
404_I628_L1.1620.70
451_I455_N1.1580.69
769_L774_A1.1510.69
132_L168_L1.1440.68
159_S166_S1.1430.68
219_E349_E1.1420.68
460_N464_K1.1390.68
53_L87_I1.1390.68
194_K412_Y1.1330.68
11_K15_E1.1300.67
223_N240_K1.1210.67
53_L120_I1.1210.67
102_H350_I1.1210.67
504_D601_I1.1180.67
382_L425_L1.1170.67
480_S487_T1.1150.66
31_P208_K1.1090.66
57_L350_I1.1070.66
585_F595_I1.1030.66
171_R388_E1.1020.65
68_V113_R1.1020.65
38_T153_I1.0970.65
588_Y750_L1.0930.65
620_I726_K1.0920.65
182_R199_L1.0910.65
149_V586_E1.0910.65
164_Q466_F1.0900.65
6_D58_N1.0860.64
222_I225_L1.0810.64
58_N62_K1.0790.64
63_E69_T1.0780.64
165_L700_K1.0740.63
53_L86_R1.0730.63
301_V307_L1.0720.63
120_I347_K1.0680.63
7_Q153_I1.0650.63
779_A782_V1.0600.62
614_V621_S1.0590.62
643_R760_I1.0560.62
248_P315_D1.0540.62
110_K723_T1.0540.62
183_I316_I1.0530.62
192_E209_I1.0530.62
229_N236_S1.0520.62
223_N351_I1.0520.62
450_K455_N1.0480.62
465_D699_S1.0440.61
198_F201_G1.0410.61
59_R181_Q1.0390.61
387_R471_S1.0380.61
688_L697_K1.0350.61
114_L141_H1.0350.61
73_I168_L1.0230.60
420_S424_D1.0230.60
402_E423_L1.0210.59
103_G279_S1.0210.59
491_I509_S1.0210.59
661_D664_N1.0200.59
131_D695_F1.0200.59
100_R222_I1.0200.59
26_E241_I1.0180.59
238_A245_I1.0160.59
86_R90_W1.0100.59
515_V525_I1.0060.58
242_N621_S1.0060.58
87_I90_W1.0060.58
601_I616_I1.0030.58
171_R392_M1.0010.58
549_P553_N1.0000.58
220_I350_I0.9990.58
595_I651_I0.9990.58
56_I147_W0.9990.58
73_I594_K0.9990.58
149_V427_N0.9920.57
166_S411_T0.9910.57
145_V180_F0.9900.57
417_L422_L0.9880.57
132_L371_G0.9860.57
374_E535_G0.9850.57
73_I389_I0.9830.57
233_L237_A0.9830.57
18_W508_I0.9790.56
131_D274_I0.9790.56
275_Y292_E0.9780.56
368_A371_G0.9780.56
106_P669_K0.9750.56
275_Y285_L0.9740.56
222_I365_Y0.9740.56
695_F709_L0.9700.56
74_T86_R0.9690.55
171_R175_F0.9690.55
772_Y775_L0.9660.55
289_A528_T0.9650.55
110_K413_I0.9640.55
428_Y618_E0.9640.55
71_I215_T0.9630.55
281_V488_V0.9620.55
194_K375_K0.9570.54
670_I728_L0.9560.54
36_Y729_E0.9540.54
7_Q11_K0.9530.54
63_E143_K0.9510.54
380_D414_Y0.9490.54
678_I731_I0.9460.54
250_L475_N0.9440.53
259_T373_M0.9430.53
146_K735_R0.9410.53
405_F426_V0.9380.53
769_L772_Y0.9350.53
196_A209_I0.9320.53
453_R456_R0.9320.53
338_S698_I0.9310.52
192_E197_Q0.9300.52
195_V199_L0.9270.52
328_V368_A0.9250.52
612_Y663_I0.9250.52
240_K246_E0.9240.52
382_L421_K0.9220.52
12_L387_R0.9190.51
99_N113_R0.9190.51
657_D660_K0.9180.51
658_L664_N0.9180.51
352_C585_F0.9170.51
258_S472_L0.9170.51
170_E201_G0.9150.51
30_E143_K0.9150.51
13_I54_L0.9130.51
97_L116_R0.9130.51
77_K283_R0.9120.51
506_I678_I0.9110.51
60_M96_F0.9100.51
30_E34_N0.9090.51
197_Q412_Y0.9080.51
387_R646_I0.9080.51
383_D716_Q0.9070.51
279_S527_V0.9070.51
11_K16_K0.9060.50
265_E268_K0.9060.50
304_T542_G0.9030.50
350_I365_Y0.9020.50
281_V552_V0.8980.50
399_M407_I0.8950.50
356_F559_M0.8920.49
37_N485_G0.8880.49
117_I314_G0.8870.49
301_V673_I0.8850.49
556_R620_I0.8840.49
71_I195_V0.8840.49
494_V539_I0.8830.49
316_I389_I0.8820.49
149_V449_F0.8780.48
63_E115_K0.8770.48
284_D563_N0.8750.48
103_G110_K0.8730.48
114_L137_R0.8680.47
250_L405_F0.8680.47
284_D414_Y0.8670.47
519_N522_K0.8670.47
588_Y592_G0.8660.47
7_Q10_R0.8650.47
451_I454_F0.8650.47
219_E251_V0.8640.47
585_F729_E0.8640.47
184_G328_V0.8630.47
768_N772_Y0.8600.47
168_L685_I0.8600.47
113_R330_S0.8590.47
370_D557_K0.8590.47
588_Y688_L0.8580.47
778_G781_T0.8580.47
238_A242_N0.8560.46
393_I595_I0.8550.46
189_V250_L0.8530.46
400_S557_K0.8530.46
83_L693_P0.8530.46
363_A709_L0.8510.46
659_F663_I0.8510.46
92_S95_G0.8490.46
381_G718_I0.8480.46
99_N106_P0.8470.46
387_R689_K0.8440.46
767_L775_L0.8440.46
406_N603_V0.8430.45
153_I199_L0.8430.45
729_E733_R0.8420.45
323_R673_I0.8420.45
160_K716_Q0.8400.45
13_I123_T0.8390.45
563_N597_S0.8380.45
95_G249_T0.8370.45
480_S524_T0.8340.45
648_G754_I0.8330.45
10_R603_V0.8330.45
594_K742_V0.8300.44
74_T90_W0.8290.44
525_I695_F0.8280.44
35_G146_K0.8280.44
416_N725_K0.8270.44
630_Y723_T0.8260.44
471_S646_I0.8240.44
388_E391_G0.8220.44
223_N227_N0.8220.44
144_N426_V0.8190.44
193_D664_N0.8170.43
633_T677_S0.8170.43
259_T698_I0.8160.43
60_M70_V0.8150.43
547_K552_V0.8150.43
32_I38_T0.8150.43
398_K456_R0.8150.43
122_V582_I0.8130.43
239_E243_Q0.8120.43
709_L780_Y0.8120.43
250_L344_G0.8110.43
46_Y78_A0.8110.43
223_N397_Q0.8100.43
40_V192_E0.8090.43
127_G130_I0.8070.43
68_V141_H0.8030.42
53_L90_W0.7970.42
150_V399_M0.7960.42
167_I414_Y0.7950.42
257_F506_I0.7950.42
367_S554_Y0.7940.42
158_N329_S0.7940.42
158_N651_I0.7930.42
562_F585_F0.7920.41
251_V579_E0.7910.41
332_L373_M0.7890.41
284_D532_E0.7880.41
30_E33_S0.7870.41
359_L746_N0.7860.41
710_I714_L0.7860.41
514_K533_G0.7860.41
382_L715_R0.7860.41
553_N598_R0.7850.41
144_N589_R0.7850.41
274_I300_A0.7830.41
612_Y649_F0.7830.41
110_K209_I0.7810.41
197_Q200_F0.7800.41
375_K550_L0.7790.40
54_L91_A0.7780.40
95_G418_E0.7780.40
395_Q398_K0.7770.40
115_K496_V0.7760.40
60_M65_V0.7760.40
167_I411_T0.7760.40
300_A360_E0.7750.40
365_Y414_Y0.7750.40
201_G249_T0.7740.40
645_S648_G0.7740.40
78_A537_I0.7740.40
32_I147_W0.7730.40
613_T747_A0.7730.40
11_K420_S0.7730.40
482_K524_T0.7730.40
244_L349_E0.7730.40
168_L388_E0.7720.40
410_G750_L0.7720.40
366_L558_I0.7720.40
62_K724_I0.7700.40
194_K377_F0.7690.40
347_K351_I0.7690.40
469_F699_S0.7690.40
435_I438_E0.7680.40
60_M603_V0.7670.40
321_M443_K0.7670.40
267_E274_I0.7660.39
546_S619_R0.7640.39
231_F236_S0.7630.39
463_G467_S0.7630.39
284_D595_I0.7630.39
99_N110_K0.7620.39
502_A624_L0.7620.39
127_G132_L0.7610.39
645_S713_A0.7610.39
468_E587_N0.7600.39
192_E198_F0.7600.39
70_V380_D0.7590.39
678_I722_F0.7580.39
221_K300_A0.7570.39
600_V738_K0.7570.39
157_I195_V0.7570.39
80_I131_D0.7560.39
114_L135_A0.7550.39
201_G205_R0.7540.39
57_L284_D0.7540.39
472_L618_E0.7540.39
409_R530_A0.7540.39
150_V660_K0.7530.39
659_F664_N0.7530.39
259_T276_V0.7520.38
153_I665_M0.7520.38
649_F739_I0.7520.38
110_K340_H0.7510.38
127_G539_I0.7500.38
526_D750_L0.7500.38
623_T722_F0.7490.38
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320_I726_K0.6620.32
107_Q111_N0.6610.32
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607_E695_F0.6600.32
273_E407_I0.6600.32
30_E197_Q0.6600.32
631_L665_M0.6580.32
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220_I253_T0.6570.32
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377_F725_K0.5510.25
471_S688_L0.5510.25
38_T682_P0.5500.25
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265_E272_K0.5460.25
301_V766_D0.5460.25
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156_L176_I0.5440.24
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225_L231_F0.5440.24
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87_I91_A0.5420.24
409_R736_E0.5420.24
549_P730_F0.5420.24
402_E405_F0.5420.24
301_V601_I0.5410.24
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67_P113_R0.5410.24
163_T357_D0.5410.24
559_M621_S0.5400.24
357_D548_S0.5400.24
398_K454_F0.5400.24
42_A484_N0.5400.24
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616_I620_I0.5390.24
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414_Y639_N0.5370.24
389_I392_M0.5370.24
251_V474_N0.5370.24
405_F532_E0.5360.24
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391_G394_L0.5320.24
616_I739_I0.5310.24
606_K705_E0.5310.24
122_V549_P0.5300.24
74_T91_A0.5300.24
33_S58_N0.5300.24
492_D547_K0.5290.24
56_I155_E0.5290.24
235_K469_F0.5290.24
92_S666_N0.5290.24
294_R681_S0.5290.24
22_T267_E0.5280.23
731_I735_R0.5280.23
547_K684_Y0.5280.23
384_V780_Y0.5270.23
50_E53_L0.5260.23
210_I675_L0.5260.23
415_R418_E0.5260.23
371_G600_V0.5250.23
15_E740_K0.5250.23
549_P733_R0.5240.23
339_G344_G0.5240.23
563_N739_I0.5230.23
80_I351_I0.5230.23
601_I614_V0.5230.23
74_T87_I0.5220.23
308_E399_M0.5220.23
388_E407_I0.5220.23
163_T413_I0.5210.23
220_I223_N0.5210.23
651_I774_A0.5210.23
406_N419_L0.5210.23
150_V282_S0.5210.23
133_D279_S0.5200.23
330_S500_V0.5200.23
631_L673_I0.5200.23
388_E459_K0.5190.23
241_I597_S0.5180.23
547_K646_I0.5180.23
72_Y96_F0.5180.23
15_E203_S0.5170.23
219_E365_Y0.5170.23
279_S321_M0.5160.23
449_F711_K0.5160.23
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239_E245_I0.5150.23
775_L778_G0.5150.23
199_L585_F0.5150.23
222_I338_S0.5140.23
8_R62_K0.5140.23
318_K328_V0.5140.23
100_R559_M0.5130.23
34_N706_D0.5130.23
266_L302_V0.5130.23
478_T492_D0.5130.23
14_E603_V0.5130.23
560_E733_R0.5130.23
556_R616_I0.5120.23
592_G688_L0.5120.23
145_V408_I0.5120.23
239_E662_I0.5120.23
335_L683_L0.5110.23
110_K498_K0.5110.23
155_E700_K0.5110.23
259_T628_L0.5110.23
343_H369_K0.5100.22
243_Q751_R0.5100.22
338_S582_I0.5100.22
143_K601_I0.5100.22
225_L351_I0.5090.22
537_I666_N0.5090.22
52_A314_G0.5080.22
378_I515_V0.5080.22
641_S652_K0.5080.22
88_D415_R0.5080.22
428_Y686_A0.5080.22
97_L482_K0.5070.22
185_L555_I0.5070.22
588_Y646_I0.5060.22
250_L658_L0.5060.22
178_Y710_I0.5060.22
12_L102_H0.5060.22
37_N411_T0.5050.22
338_S434_I0.5050.22
391_G475_N0.5050.22
408_I417_L0.5050.22
250_L633_T0.5050.22
642_S705_E0.5050.22
193_D709_L0.5040.22
31_P210_I0.5040.22
603_V612_Y0.5040.22
145_V368_A0.5040.22
77_K83_L0.5030.22
119_H293_L0.5030.22
660_K733_R0.5030.22
220_I496_V0.5020.22
456_R459_K0.5020.22
8_R175_F0.5010.22
50_E387_R0.5010.22
153_I648_G0.5010.22
110_K739_I0.5000.22
Legend: The i and j are positions as given in the UniProt sequence. Only predictions with Prob ≥ 0.7 are listed. For all 3L/2 predictions, click on one of the links below.

Sco = ((raw_sco - min_sco)/(avg_sco - min_sco))/2 + 0.5
Prob = P(contact | Sco, seq80/√len)
seq80 = effective number of sequences, after reducing redundancy to 80% identity

HHsearch Results:
Legend: GREMLIN results (Prob ≥ 0.7) overlaid on top PDB hits. The grey/red filled circles underneath are pdb residue contacts (min distance < 5 Angstroms). The shade of the circles is based on the top 10 (or top 20 if e-value < 1E-20) HHsearch results which uses the overall probability and per-site alignment prob. Inter oligomeric contacts in the pdb are in shades of red.
PDB Chains Cov % HHΔ  
2p6rA 1 0.6527 100 0.799 Contact Map
2va8A 1 0.6645 100 0.8 Contact Map
2zj8A 2 0.6624 100 0.802 Contact Map
4f92B 1 0.7428 100 0.807 Contact Map
5agaA 4 0.701 100 0.819 Contact Map
4bgdA 1 0.926 100 0.82 Contact Map
4w7sA 2 0.4191 100 0.823 Contact Map
4d25A 1 0.3976 100 0.824 Contact Map
4u4cA 1 0.8221 100 0.825 Contact Map
4bujA 1 0.6013 100 0.825 Contact Map

Sequence Conservation (Image Generated using WebLogo v3)
Legend: Color is used to show Hydrophobicity (Blue: Hydrophilic, Green: Neutral and Black: Hydrophobic). Amount of gaps is represented by width.

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