Q97ZD8 - SULSO - GREMLIN Contacts

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Q97ZD8 - Transposase ISC1217

UniProt:	Q97ZD8	Sequences: MTKELTREEYYKALEKAVNEVILSMTGTRKDVAKRLVLGAVVGRNATEIAQEAEMDYETVLNNLDKAAQAKLIEVVKKLVGDHPVLLIVDDTHDHKLYARAMPVSRNGAQIFYCRSHKRFEPAIQLLVIGVKDLVNNQIYVIHIIAYIPRKVEEELKRRGEEVKFKTKIDALLEFLSSLSGLNVKAKVFDSWYVNSRTLQGNTVGELKSSARVVEGGRSVPVSEFPQGEYLVEYLGTPIKLLVIDDYKGYGRRYFFSTDLNDTAEDIITTWENRWDIEVLIRELKALGLEGGSFLTWVRNSGFVALKALSLLVVQYFKYSTGLVLGAKRLARLIKSIYHEVGGIKKLFKRRRKP	Download Alignment We filter this alignment to remove sites that have many gaps before running GREMLIN. Date: 2015_01
Length:	354 (294)
Sequences:	1053 (809)
Seq/√Len:	47.2

SULSO - Q97ZD8 Q97Y34 Q97XR1 Q97XK5 Q97VQ0 Q97YE4 Q7LYK0 Q7LX51

GREMLIN Results:

Legend: The darker and larger the blue dots, the higher coevolution strength.

Residue pairs sorted by coevolution strength:

i	j	Sco	Prob
189_F	205_G	3.990	1.00
129_I	179_L	3.487	1.00
145_I	178_S	3.294	1.00
89_V	172_L	3.054	1.00
36_L	303_F	2.968	1.00
223_S	228_G	2.911	1.00
287_L	307_K	2.888	1.00
166_K	174_E	2.819	1.00
221_P	227_Q	2.752	1.00
87_L	179_L	2.733	1.00
228_G	232_V	2.581	1.00
89_V	187_K	2.550	1.00
90_D	274_R	2.504	1.00
224_E	228_G	2.448	1.00
91_D	192_W	2.436	1.00
222_V	228_G	2.426	1.00
152_V	155_E	2.374	1.00
204_V	271_W	2.307	1.00
90_D	278_E	2.266	1.00
155_E	158_R	2.254	1.00
128_V	281_I	2.175	1.00
220_V	223_S	2.136	1.00
223_S	227_Q	2.089	1.00
88_I	132_K	2.080	1.00
274_R	278_E	2.069	1.00
143_H	175_F	2.050	1.00
222_V	226_P	2.042	1.00
127_L	193_Y	2.017	0.99
143_H	178_S	1.998	0.99
91_D	168_K	1.943	0.99
220_V	229_E	1.908	0.99
26_T	30_K	1.885	0.99
278_E	285_K	1.881	0.99
145_I	174_E	1.875	0.99
293_S	299_R	1.872	0.99
85_V	131_V	1.849	0.99
154_E	157_K	1.835	0.99
150_R	154_E	1.835	0.99
130_G	139_I	1.739	0.98
142_I	182_L	1.726	0.98
222_V	229_E	1.722	0.98
91_D	193_Y	1.694	0.98
90_D	285_K	1.684	0.98
240_K	243_V	1.656	0.98
152_V	158_R	1.653	0.98
294_F	299_R	1.651	0.98
221_P	226_P	1.643	0.98
32_V	59_T	1.632	0.98
145_I	301_S	1.627	0.97
223_S	232_V	1.621	0.97
222_V	227_Q	1.615	0.97
220_V	232_V	1.615	0.97
62_N	65_D	1.601	0.97
22_I	25_M	1.598	0.97
220_V	227_Q	1.583	0.97
221_P	228_G	1.576	0.97
153_E	157_K	1.575	0.97
193_Y	274_R	1.572	0.97
275_W	278_E	1.565	0.97
22_I	30_K	1.466	0.95
167_T	170_D	1.456	0.95
274_R	285_K	1.433	0.95
225_F	232_V	1.429	0.95
93_H	121_E	1.424	0.95
194_V	200_Q	1.422	0.95
170_D	173_L	1.418	0.94
220_V	228_G	1.417	0.94
63_N	292_G	1.399	0.94
227_Q	232_V	1.398	0.94
224_E	229_E	1.379	0.94
93_H	114_C	1.375	0.93
202_N	258_T	1.370	0.93
228_G	231_L	1.366	0.93
224_E	227_Q	1.366	0.93
296_T	307_K	1.366	0.93
95_H	117_H	1.361	0.93
91_D	275_W	1.360	0.93
153_E	158_R	1.355	0.93
64_L	306_L	1.350	0.93
242_L	267_I	1.341	0.93
89_V	129_I	1.338	0.92
194_V	205_G	1.331	0.92
130_G	281_I	1.331	0.92
168_K	193_Y	1.330	0.92
211_A	256_F	1.330	0.92
303_F	310_S	1.327	0.92
115_R	192_W	1.300	0.91
295_L	303_F	1.291	0.91
86_L	270_T	1.290	0.91
279_V	283_E	1.289	0.91
292_G	300_N	1.287	0.91
275_W	285_K	1.283	0.91
193_Y	285_K	1.280	0.91
147_Y	165_F	1.262	0.90
225_F	228_G	1.260	0.90
243_V	246_D	1.259	0.90
103_P	300_N	1.258	0.90
90_D	275_W	1.239	0.89
108_G	288_G	1.229	0.89
36_L	40_A	1.199	0.88
92_T	278_E	1.196	0.87
221_P	225_F	1.195	0.87
114_C	121_E	1.182	0.87
199_L	205_G	1.179	0.87
69_Q	302_G	1.172	0.86
190_D	278_E	1.168	0.86
49_I	52_E	1.168	0.86
223_S	226_P	1.161	0.86
93_H	112_F	1.155	0.86
28_T	33_A	1.154	0.86
145_I	171_A	1.147	0.85
154_E	162_E	1.146	0.85
21_V	24_S	1.145	0.85
206_E	253_R	1.144	0.85
94_D	102_M	1.142	0.85
297_W	301_S	1.141	0.85
240_K	244_I	1.140	0.85
29_R	67_A	1.123	0.84
20_E	25_M	1.115	0.84
26_T	29_R	1.114	0.83
195_N	210_S	1.112	0.83
38_L	41_V	1.108	0.83
223_S	231_L	1.094	0.82
186_A	270_T	1.086	0.82
221_P	224_E	1.082	0.82
275_W	314_V	1.081	0.82
129_I	175_F	1.081	0.82
285_K	314_V	1.076	0.81
141_V	312_L	1.074	0.81
220_V	226_P	1.073	0.81
108_G	148_I	1.067	0.81
86_L	188_V	1.062	0.80
40_A	45_N	1.042	0.79
109_A	122_P	1.041	0.79
19_N	23_L	1.040	0.79
112_F	115_R	1.037	0.79
87_L	184_V	1.034	0.79
166_K	177_S	1.030	0.78
276_D	311_L	1.028	0.78
57_Y	61_L	1.027	0.78
204_V	257_S	1.023	0.78
128_V	141_V	1.020	0.78
102_M	124_I	1.012	0.77
88_I	188_V	1.011	0.77
114_C	125_Q	1.010	0.77
39_G	49_I	1.004	0.76
91_D	281_I	0.998	0.76
203_T	258_T	0.993	0.76
304_V	307_K	0.992	0.76
141_V	280_L	0.991	0.76
63_N	67_A	0.981	0.75
221_P	232_V	0.978	0.75
96_K	109_A	0.974	0.74
103_P	297_W	0.973	0.74
200_Q	205_G	0.972	0.74
90_D	277_I	0.972	0.74
90_D	168_K	0.969	0.74
274_R	281_I	0.968	0.74
48_E	51_Q	0.966	0.74
72_L	76_V	0.965	0.74
129_I	176_L	0.963	0.73
231_L	234_Y	0.963	0.73
24_S	71_K	0.960	0.73
221_P	229_E	0.958	0.73
158_R	163_V	0.957	0.73
171_A	175_F	0.957	0.73
77_K	182_L	0.956	0.73
306_L	310_S	0.955	0.73
127_L	145_I	0.951	0.72
28_T	31_D	0.946	0.72
139_I	280_L	0.945	0.72
33_A	37_V	0.945	0.72
92_T	275_W	0.943	0.72
211_A	254_Y	0.942	0.72
22_I	29_R	0.935	0.71
249_G	257_S	0.933	0.71
170_D	234_Y	0.929	0.71
205_G	256_F	0.927	0.71
124_I	300_N	0.924	0.70
92_T	274_R	0.923	0.70
260_L	263_T	0.922	0.70
127_L	172_L	0.920	0.70
277_I	285_K	0.919	0.70
103_P	124_I	0.916	0.70
58_E	62_N	0.914	0.69
130_G	280_L	0.912	0.69
126_L	300_N	0.910	0.69
33_A	36_L	0.909	0.69
21_V	25_M	0.906	0.69
227_Q	231_L	0.902	0.68
126_L	304_V	0.900	0.68
281_I	285_K	0.894	0.68
125_Q	149_P	0.894	0.68
153_E	156_L	0.893	0.68
94_D	126_L	0.892	0.68
222_V	232_V	0.891	0.67
129_I	187_K	0.891	0.67
148_I	152_V	0.886	0.67
124_I	148_I	0.885	0.67
45_N	50_A	0.885	0.67
98_Y	109_A	0.881	0.67
31_D	236_G	0.880	0.66
25_M	29_R	0.878	0.66
139_I	276_D	0.875	0.66
112_F	124_I	0.873	0.66
159_R	163_V	0.871	0.66
70_A	178_S	0.870	0.66
299_R	303_F	0.869	0.66
90_D	193_Y	0.859	0.65
117_H	121_E	0.859	0.65
188_V	270_T	0.857	0.64
114_C	117_H	0.856	0.64
32_V	35_R	0.856	0.64
141_V	311_L	0.855	0.64
94_D	304_V	0.855	0.64
48_E	293_S	0.854	0.64
127_L	171_A	0.854	0.64
37_V	309_L	0.852	0.64
230_Y	233_E	0.849	0.64
92_T	285_K	0.845	0.63
45_N	118_K	0.845	0.63
240_K	245_D	0.840	0.63
279_V	282_R	0.836	0.62
227_Q	233_E	0.833	0.62
70_A	74_E	0.832	0.62
101_A	129_I	0.826	0.62
18_V	34_K	0.824	0.61
72_L	80_V	0.822	0.61
125_Q	168_K	0.820	0.61
154_E	158_R	0.819	0.61
111_I	122_P	0.818	0.61
239_I	242_L	0.815	0.61
112_F	121_E	0.815	0.61
207_L	211_A	0.809	0.60
214_V	219_S	0.803	0.59
18_V	33_A	0.800	0.59
17_A	21_V	0.799	0.59
77_K	80_V	0.797	0.59
26_T	32_V	0.795	0.59
189_F	192_W	0.792	0.58
161_E	164_K	0.792	0.58
176_L	233_E	0.790	0.58
29_R	296_T	0.785	0.58
98_Y	295_L	0.784	0.58
36_L	293_S	0.782	0.57
122_P	149_P	0.780	0.57
115_R	121_E	0.779	0.57
63_N	69_Q	0.777	0.57
207_L	256_F	0.771	0.56
28_T	36_L	0.770	0.56
255_F	271_W	0.767	0.56
48_E	52_E	0.767	0.56
93_H	120_F	0.767	0.56
189_F	194_V	0.767	0.56
94_D	128_V	0.766	0.56
127_L	147_Y	0.760	0.55
147_Y	168_K	0.760	0.55
150_R	187_K	0.759	0.55
207_L	278_E	0.754	0.55
241_L	254_Y	0.749	0.54
91_D	277_I	0.747	0.54
281_I	284_L	0.743	0.53
220_V	225_F	0.742	0.53
21_V	27_G	0.741	0.53
102_M	292_G	0.739	0.53
181_G	185_K	0.736	0.53
40_A	284_L	0.734	0.53
83_H	156_L	0.733	0.52
220_V	224_E	0.731	0.52
284_L	289_L	0.728	0.52
17_A	20_E	0.727	0.52
27_G	31_D	0.723	0.51
23_L	30_K	0.722	0.51
193_Y	275_W	0.722	0.51
132_K	273_N	0.719	0.51
29_R	33_A	0.718	0.51
18_V	21_V	0.716	0.51
226_P	229_E	0.714	0.51
230_Y	235_L	0.710	0.50
189_F	208_K	0.710	0.50
257_S	293_S	0.708	0.50
191_S	207_L	0.706	0.50
191_S	208_K	0.704	0.50
95_H	121_E	0.703	0.50
225_F	233_E	0.701	0.49
223_S	230_Y	0.698	0.49
224_E	230_Y	0.698	0.49
227_Q	265_E	0.696	0.49
277_I	287_L	0.695	0.49
92_T	304_V	0.691	0.48
21_V	213_V	0.690	0.48
82_D	136_N	0.687	0.48
110_Q	151_K	0.685	0.48
39_G	108_G	0.682	0.47
127_L	168_K	0.682	0.47
114_C	120_F	0.682	0.47
96_K	102_M	0.679	0.47
69_Q	98_Y	0.679	0.47
18_V	37_V	0.678	0.47
193_Y	278_E	0.677	0.47
278_E	281_I	0.677	0.47
142_I	237_T	0.674	0.47
103_P	152_V	0.674	0.47
190_D	274_R	0.674	0.47
102_M	146_A	0.671	0.46
127_L	289_L	0.670	0.46
115_R	120_F	0.670	0.46
112_F	149_P	0.669	0.46
142_I	179_L	0.667	0.46
184_V	282_R	0.664	0.46
93_H	125_Q	0.663	0.46
102_M	118_K	0.662	0.45
103_P	301_S	0.662	0.45
114_C	275_W	0.660	0.45
48_E	299_R	0.659	0.45
40_A	303_F	0.658	0.45
68_A	302_G	0.657	0.45
127_L	274_R	0.657	0.45
271_W	274_R	0.655	0.45
74_E	265_E	0.652	0.44
255_F	268_I	0.650	0.44
102_M	126_L	0.645	0.44
58_E	292_G	0.644	0.44
221_P	233_E	0.642	0.43
208_K	212_R	0.642	0.43
197_R	251_G	0.641	0.43
239_I	243_V	0.641	0.43
113_Y	183_N	0.641	0.43
278_E	314_V	0.640	0.43
71_K	74_E	0.640	0.43
41_V	100_R	0.637	0.43
19_N	27_G	0.635	0.43
74_E	210_S	0.632	0.42
275_W	281_I	0.631	0.42
302_G	305_A	0.630	0.42
67_A	148_I	0.627	0.42
246_D	249_G	0.627	0.42
111_I	120_F	0.625	0.42
296_T	308_A	0.621	0.41
32_V	63_N	0.621	0.41
231_L	240_K	0.620	0.41
94_D	303_F	0.619	0.41
40_A	306_L	0.618	0.41
69_Q	305_A	0.617	0.41
48_E	311_L	0.617	0.41
131_V	189_F	0.616	0.41
20_E	24_S	0.614	0.41
124_I	303_F	0.610	0.40
192_W	275_W	0.609	0.40
45_N	291_G	0.607	0.40
72_L	75_V	0.606	0.40
257_S	267_I	0.605	0.40
225_F	230_Y	0.605	0.40
288_G	291_G	0.604	0.40
75_V	80_V	0.602	0.40
102_M	293_S	0.601	0.40
153_E	162_E	0.600	0.39
76_V	308_A	0.600	0.39
150_R	237_T	0.600	0.39
39_G	60_V	0.599	0.39
282_R	285_K	0.596	0.39
226_P	232_V	0.594	0.39
22_I	27_G	0.592	0.39
174_E	261_N	0.591	0.39
34_K	38_L	0.590	0.38
18_V	22_I	0.590	0.38
221_P	231_L	0.589	0.38
71_K	75_V	0.589	0.38
38_L	157_K	0.588	0.38
111_I	121_E	0.586	0.38
92_T	289_L	0.585	0.38
172_L	187_K	0.583	0.38
111_I	253_R	0.583	0.38
21_V	34_K	0.583	0.38
244_I	247_Y	0.583	0.38
135_V	138_Q	0.582	0.38
179_L	182_L	0.581	0.38
29_R	32_V	0.580	0.38
298_V	302_G	0.579	0.37
300_N	304_V	0.576	0.37
32_V	62_N	0.575	0.37
67_A	142_I	0.574	0.37
292_G	299_R	0.574	0.37
289_L	304_V	0.573	0.37
112_F	125_Q	0.571	0.37
73_I	77_K	0.568	0.36
116_S	290_E	0.568	0.36
17_A	31_D	0.566	0.36
283_E	286_A	0.565	0.36
41_V	241_L	0.562	0.36
37_V	142_I	0.562	0.36
157_K	162_E	0.560	0.36
65_D	299_R	0.555	0.35
98_Y	283_E	0.553	0.35
48_E	257_S	0.553	0.35
295_L	310_S	0.551	0.35
263_T	266_D	0.551	0.35
62_N	299_R	0.551	0.35
111_I	118_K	0.551	0.35
168_K	192_W	0.550	0.35
168_K	274_R	0.545	0.34
103_P	126_L	0.543	0.34
97_L	121_E	0.543	0.34
192_W	208_K	0.542	0.34
263_T	269_T	0.541	0.34
296_T	311_L	0.540	0.34
22_I	26_T	0.538	0.34
266_D	270_T	0.538	0.34
89_V	223_S	0.537	0.34
152_V	157_K	0.536	0.34
154_E	164_K	0.536	0.34
69_Q	306_L	0.536	0.34
142_I	231_L	0.534	0.33
226_P	230_Y	0.534	0.33
114_C	141_V	0.533	0.33
95_H	116_S	0.533	0.33
222_V	234_Y	0.533	0.33
40_A	310_S	0.532	0.33
19_N	34_K	0.530	0.33
167_T	285_K	0.528	0.33
91_D	191_S	0.523	0.32
108_G	146_A	0.521	0.32
147_Y	193_Y	0.520	0.32
60_V	63_N	0.519	0.32
37_V	72_L	0.518	0.32
252_R	309_L	0.518	0.32
80_V	140_Y	0.518	0.32
90_D	190_D	0.516	0.32
123_A	245_D	0.516	0.32
60_V	142_I	0.516	0.32
233_E	237_T	0.516	0.32
85_V	185_K	0.515	0.32
57_Y	275_W	0.514	0.32
17_A	313_V	0.513	0.31
36_L	39_G	0.508	0.31
25_M	30_K	0.507	0.31
248_K	264_A	0.506	0.31
67_A	302_G	0.504	0.31
168_K	194_V	0.503	0.31
98_Y	288_G	0.503	0.31
301_S	305_A	0.500	0.30

Legend: The i and j are positions as given in the UniProt sequence. Only predictions with Prob ≥ 0.7 are listed. For all 3L/2 predictions, click on one of the links below.

Sco = ((raw_sco - min_sco)/(avg_sco - min_sco))/2 + 0.5
Prob = P(contact | Sco, seq80/√len)
seq80 = effective number of sequences, after reducing redundancy to 80% identity

Text file of predictions (all 3L/2 predictions)
Generate restraints for ROSETTA Structure Modeling
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HHsearch Results:

Legend: GREMLIN results (Prob ≥ 0.7) overlaid on top PDB hits. The grey/red filled circles underneath are pdb residue contacts (min distance < 5 Angstroms). The shade of the circles is based on the top 10 (or top 20 if e-value < 1E-20) HHsearch results which uses the overall probability and per-site alignment prob. Inter oligomeric contacts in the pdb are in shades of red.

PDB	Chains	Cov	%	HHΔ
1musA	2	0.9266	99.9	0.717	Contact Map
2kkoA	2	0.3023	24.6	0.963	Contact Map
2zkzA	2	0.2514	10	0.969	Contact Map
3cuoA	2	0.2768	9.2	0.97	Contact Map
3rqiA	2	0.1723	8	0.97	Contact Map
3hdeA	2	0.2825	7.6	0.971	Contact Map
1qgpA	1	0.2034	7.2	0.971	Contact Map
1r1tA	2	0.274	7	0.971	Contact Map
4i2oA	2	0.2486	6.4	0.972	Contact Map
3mzyA	1	0.209	6.2	0.972	Contact Map

Sequence Conservation (Image Generated using WebLogo v3)

Legend: Color is used to show Hydrophobicity (Blue: Hydrophilic, Green: Neutral and Black: Hydrophobic). Amount of gaps is represented by width.

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