Q97ZD5 - SULSO - GREMLIN Contacts

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Q97ZD5 - Oxidoreductase, putative

UniProt:	Q97ZD5	Sequences: MKVGIVGGGIVGLFTAYYLAKEGIKDIIIYEKGFLGAGSIHAAGLIEPYRFDKINTLSMIKKMLKYKMNGSTDIKEVDKLWLVELIKNLEKDPPGEAWDTMREMAKFSLSEYKRIAEEKNDFDYHEDGLLELYYNSKEFESGIEDEKKSPFNPKFEIEEIKGFAGGLFFPELSRISTEKFIDRISREIVSNIKVKNEEVIKVSDEGYIDGEKYDLVVVAAGIWSRILKIPLTAFKGYGYRVKGVSKLNRAAVIVDYGLAISPLSDHIKITGGFDADFSIDSKRAEDFLKKAEELVDIQYIIDLNMGFRPCSPDGFPVIGKRNNLVLVTGACRLGWSYGPAMGRYATDLALGKAKDLGYISRYYHE	Download Alignment We filter this alignment to remove sites that have many gaps before running GREMLIN. Date: 2015_01
Length:	365 (356)
Sequences:	3901 (2765)
Seq/√Len:	146.6

ECOLI - DADA PUUB LHGO MTOX MNMC GLPD
BACSU - YHFW YURR GLOX
HALSA - Q9HSD9
SULSO - Q97ZD5 Q980U0 Q97VT4

GREMLIN Results:

Legend: The darker and larger the blue dots, the higher coevolution strength.

Residue pairs sorted by coevolution strength:

i	j	Sco	Prob
153_P	156_E	5.728	1.00
188_I	192_I	5.078	1.00
136_S	140_E	3.559	1.00
4_G	213_Y	3.535	1.00
24_I	350_L	3.432	1.00
347_D	352_K	3.340	1.00
327_V	341_M	3.332	1.00
20_A	192_I	3.308	1.00
21_K	118_E	3.182	1.00
31_E	198_E	3.058	1.00
76_E	80_L	2.949	1.00
157_I	166_G	2.944	1.00
4_G	29_I	2.835	1.00
6_V	220_A	2.834	1.00
150_P	156_E	2.739	1.00
325_V	345_A	2.739	1.00
347_D	355_D	2.629	1.00
22_E	352_K	2.622	1.00
148_K	171_E	2.615	1.00
8_G	30_Y	2.605	1.00
186_R	189_V	2.600	1.00
224_S	328_T	2.567	1.00
325_V	349_A	2.526	1.00
156_E	159_E	2.462	1.00
22_E	350_L	2.437	1.00
113_K	126_E	2.404	1.00
18_Y	342_G	2.287	1.00
285_E	289_K	2.175	1.00
90_E	93_P	2.149	1.00
327_V	345_A	2.096	1.00
15_T	327_V	2.081	1.00
3_V	24_I	2.059	1.00
186_R	190_S	2.051	1.00
20_A	188_I	2.047	1.00
152_N	156_E	2.018	1.00
111_E	343_R	1.996	1.00
330_A	341_M	1.947	1.00
150_P	170_P	1.933	1.00
27_I	195_K	1.877	1.00
8_G	34_F	1.842	1.00
25_K	193_K	1.821	1.00
187_E	190_S	1.797	1.00
14_F	342_G	1.781	1.00
178_E	182_D	1.778	1.00
213_Y	216_V	1.762	1.00
13_L	28_I	1.748	1.00
143_I	147_K	1.740	1.00
140_E	143_I	1.727	1.00
15_T	217_V	1.719	1.00
236_G	308_R	1.718	1.00
321_R	326_L	1.705	1.00
114_R	118_E	1.693	1.00
216_V	323_N	1.690	1.00
179_K	183_R	1.689	1.00
93_P	96_E	1.688	1.00
247_L	250_A	1.684	1.00
185_S	194_V	1.683	1.00
342_G	346_T	1.671	1.00
154_K	158_E	1.667	1.00
13_L	181_I	1.619	1.00
32_K	36_G	1.614	1.00
325_V	348_L	1.606	1.00
269_I	291_A	1.600	1.00
215_L	325_V	1.599	1.00
107_F	343_R	1.587	1.00
29_I	213_Y	1.574	1.00
83_V	87_K	1.538	1.00
30_Y	33_G	1.523	1.00
343_R	347_D	1.519	1.00
288_L	292_E	1.518	1.00
103_E	361_R	1.472	1.00
320_K	323_N	1.463	1.00
17_Y	21_K	1.461	1.00
150_P	168_F	1.455	1.00
22_E	346_T	1.452	1.00
249_R	252_V	1.449	1.00
150_P	160_I	1.448	1.00
295_V	298_Q	1.444	1.00
32_K	37_A	1.426	1.00
88_N	93_P	1.412	1.00
13_L	188_I	1.409	1.00
281_S	285_E	1.408	1.00
152_N	160_I	1.398	1.00
338_G	342_G	1.390	1.00
27_I	193_K	1.381	1.00
234_F	310_C	1.378	1.00
91_K	95_G	1.360	1.00
268_K	271_G	1.344	1.00
111_E	114_R	1.326	1.00
205_E	212_K	1.324	1.00
100_T	361_R	1.324	1.00
18_Y	22_E	1.316	1.00
18_Y	343_R	1.316	1.00
175_I	335_W	1.313	1.00
17_Y	187_E	1.309	1.00
3_V	215_L	1.305	1.00
100_T	315_F	1.303	1.00
208_I	323_N	1.301	1.00
219_A	327_V	1.301	1.00
189_V	194_V	1.289	1.00
231_L	328_T	1.288	1.00
185_S	189_V	1.276	1.00
33_G	36_G	1.274	1.00
284_A	288_L	1.273	1.00
333_L	336_S	1.270	1.00
138_E	255_D	1.252	1.00
357_G	360_S	1.252	1.00
123_D	179_K	1.251	1.00
347_D	354_K	1.248	1.00
84_E	87_K	1.242	1.00
87_K	90_E	1.238	1.00
10_I	338_G	1.225	1.00
233_A	307_F	1.222	1.00
108_S	340_A	1.219	1.00
311_S	317_V	1.219	1.00
139_F	142_G	1.210	1.00
139_F	151_F	1.207	1.00
217_V	349_A	1.202	1.00
28_I	194_V	1.199	1.00
27_I	214_D	1.198	1.00
144_E	147_K	1.197	1.00
180_F	335_W	1.185	1.00
142_G	146_E	1.179	1.00
41_H	304_N	1.170	1.00
15_T	219_A	1.164	1.00
6_V	199_V	1.153	1.00
346_T	350_L	1.152	1.00
24_I	349_A	1.152	1.00
119_K	187_E	1.150	1.00
157_I	163_F	1.147	1.00
197_E	209_D	1.146	1.00
344_Y	358_Y	1.145	1.00
204_D	323_N	1.137	0.99
320_K	325_V	1.135	0.99
14_F	339_P	1.133	0.99
18_Y	115_I	1.130	0.99
217_V	345_A	1.130	0.99
207_Y	212_K	1.129	0.99
272_G	283_R	1.127	0.99
253_I	256_Y	1.125	0.99
343_R	355_D	1.124	0.99
111_E	340_A	1.121	0.99
354_K	358_Y	1.120	0.99
114_R	343_R	1.117	0.99
162_G	293_E	1.117	0.99
236_G	309_P	1.100	0.99
61_K	65_K	1.096	0.99
218_V	324_L	1.094	0.99
59_M	62_K	1.093	0.99
320_K	348_L	1.093	0.99
234_F	273_F	1.092	0.99
284_A	303_L	1.090	0.99
71_S	289_K	1.081	0.99
40_I	178_E	1.080	0.99
212_K	216_V	1.079	0.99
208_I	216_V	1.079	0.99
20_A	25_K	1.078	0.99
183_R	186_R	1.077	0.99
105_A	337_Y	1.074	0.99
155_F	159_E	1.066	0.99
31_E	37_A	1.060	0.99
289_K	293_E	1.058	0.99
215_L	320_K	1.057	0.99
44_G	263_L	1.055	0.99
208_I	324_L	1.054	0.99
40_I	302_D	1.054	0.99
133_Y	139_F	1.050	0.99
83_V	86_I	1.045	0.99
176_S	264_S	1.044	0.99
28_I	192_I	1.044	0.99
256_Y	293_E	1.043	0.99
24_I	214_D	1.042	0.99
95_G	99_D	1.035	0.99
220_A	224_S	1.035	0.99
107_F	340_A	1.032	0.99
96_E	99_D	1.026	0.99
143_I	151_F	1.024	0.99
175_I	180_F	1.019	0.99
247_L	252_V	1.018	0.99
66_Y	73_D	1.009	0.99
160_I	249_R	1.007	0.99
199_V	220_A	1.004	0.99
241_V	288_L	1.000	0.99
246_K	250_A	0.992	0.99
148_K	170_P	0.991	0.99
176_S	179_K	0.987	0.99
29_I	195_K	0.987	0.99
237_Y	274_D	0.985	0.99
135_N	138_E	0.982	0.98
113_K	173_S	0.981	0.98
189_V	193_K	0.980	0.98
69_N	72_T	0.977	0.98
268_K	274_D	0.973	0.98
179_K	182_D	0.972	0.98
18_Y	21_K	0.971	0.98
18_Y	111_E	0.967	0.98
81_W	85_L	0.967	0.98
136_S	164_A	0.967	0.98
60_I	86_I	0.950	0.98
220_A	227_L	0.949	0.98
215_L	349_A	0.948	0.98
132_L	163_F	0.944	0.98
348_L	354_K	0.942	0.98
60_I	64_L	0.938	0.98
232_T	307_F	0.937	0.98
110_S	114_R	0.930	0.98
53_K	73_D	0.927	0.98
36_G	182_D	0.925	0.98
142_G	145_D	0.921	0.98
72_T	75_K	0.915	0.98
316_P	337_Y	0.913	0.98
24_I	27_I	0.913	0.98
345_A	349_A	0.911	0.98
240_R	266_H	0.908	0.97
112_Y	338_G	0.907	0.97
201_K	204_D	0.906	0.97
318_I	361_R	0.899	0.97
207_Y	323_N	0.898	0.97
203_S	211_E	0.898	0.97
289_K	292_E	0.898	0.97
128_G	168_F	0.896	0.97
24_I	215_L	0.895	0.97
169_F	172_L	0.894	0.97
4_G	216_V	0.893	0.97
22_E	343_R	0.891	0.97
107_F	111_E	0.890	0.97
309_P	330_A	0.886	0.97
10_I	181_I	0.885	0.97
285_E	288_L	0.884	0.97
225_R	228_K	0.883	0.97
235_K	305_M	0.881	0.97
160_I	168_F	0.877	0.97
202_V	216_V	0.877	0.97
188_I	194_V	0.877	0.97
62_K	66_Y	0.870	0.97
356_L	361_R	0.866	0.97
64_L	68_M	0.864	0.97
154_K	163_F	0.860	0.96
134_Y	253_I	0.860	0.96
271_G	274_D	0.859	0.96
64_L	67_K	0.857	0.96
45_L	50_R	0.856	0.96
344_Y	347_D	0.856	0.96
214_D	323_N	0.855	0.96
116_A	122_F	0.854	0.96
63_M	66_Y	0.854	0.96
15_T	22_E	0.853	0.96
181_I	185_S	0.852	0.96
103_E	360_S	0.851	0.96
152_N	157_I	0.851	0.96
318_I	341_M	0.848	0.96
102_R	106_K	0.847	0.96
247_L	251_A	0.843	0.96
20_A	28_I	0.841	0.96
179_K	264_S	0.839	0.96
30_Y	34_F	0.837	0.96
29_I	197_E	0.835	0.96
107_F	110_S	0.834	0.96
318_I	345_A	0.833	0.96
268_K	273_F	0.830	0.96
229_I	328_T	0.827	0.96
34_F	182_D	0.826	0.96
188_I	191_N	0.825	0.96
239_Y	301_I	0.823	0.95
286_D	290_K	0.821	0.95
14_F	338_G	0.818	0.95
60_I	89_L	0.815	0.95
30_Y	194_V	0.813	0.95
234_F	272_G	0.809	0.95
122_F	183_R	0.808	0.95
64_L	69_N	0.804	0.95
230_P	317_V	0.802	0.95
340_A	344_Y	0.800	0.95
230_P	313_D	0.799	0.95
217_V	325_V	0.798	0.95
134_Y	162_G	0.794	0.95
292_E	297_I	0.792	0.94
28_I	185_S	0.789	0.94
268_K	272_G	0.786	0.94
58_S	63_M	0.784	0.94
207_Y	322_N	0.781	0.94
133_Y	142_G	0.777	0.94
218_V	224_S	0.774	0.94
330_A	334_G	0.773	0.94
189_V	212_K	0.769	0.94
139_F	143_I	0.769	0.94
114_R	117_E	0.768	0.93
311_S	329_G	0.767	0.93
204_D	324_L	0.766	0.93
246_K	252_V	0.764	0.93
94_P	98_W	0.757	0.93
141_S	144_E	0.757	0.93
151_F	167_L	0.756	0.93
288_L	303_L	0.754	0.93
38_G	222_I	0.752	0.93
13_L	185_S	0.751	0.93
135_N	255_D	0.750	0.93
88_N	97_A	0.749	0.93
182_D	186_R	0.747	0.93
116_A	173_S	0.744	0.92
104_M	340_A	0.742	0.92
127_D	248_N	0.738	0.92
177_T	180_F	0.737	0.92
198_E	226_I	0.728	0.92
7_G	12_G	0.728	0.92
19_L	349_A	0.727	0.92
235_K	278_S	0.726	0.91
242_K	301_I	0.725	0.91
5_I	217_V	0.724	0.91
149_S	167_L	0.721	0.91
246_K	249_R	0.721	0.91
123_D	266_H	0.719	0.91
33_G	196_N	0.712	0.91
308_R	330_A	0.712	0.91
63_M	82_L	0.709	0.90
239_Y	288_L	0.708	0.90
311_S	331_C	0.707	0.90
288_L	291_A	0.706	0.90
49_Y	52_D	0.705	0.90
47_E	50_R	0.704	0.90
318_I	360_S	0.704	0.90
288_L	299_Y	0.704	0.90
66_Y	74_I	0.702	0.90
9_G	12_G	0.701	0.90
285_E	303_L	0.700	0.90
36_G	40_I	0.699	0.90
235_K	276_D	0.699	0.90
234_F	332_R	0.694	0.90
257_G	271_G	0.693	0.89
354_K	357_G	0.690	0.89
200_I	203_S	0.689	0.89
140_E	144_E	0.687	0.89
16_A	28_I	0.686	0.89
309_P	329_G	0.683	0.89
222_I	233_A	0.678	0.88
50_R	173_S	0.677	0.88
218_V	227_L	0.676	0.88
237_Y	283_R	0.675	0.88
200_I	209_D	0.673	0.88
128_G	170_P	0.672	0.88
3_V	19_L	0.666	0.88
14_F	28_I	0.666	0.88
242_K	299_Y	0.666	0.88
161_K	249_R	0.665	0.87
143_I	146_E	0.664	0.87
31_E	223_W	0.663	0.87
6_V	202_V	0.662	0.87
161_K	248_N	0.661	0.87
62_K	65_K	0.661	0.87
327_V	330_A	0.659	0.87
41_H	238_G	0.659	0.87
92_D	96_E	0.657	0.87
5_I	12_G	0.656	0.87
113_K	117_E	0.654	0.87
174_R	261_S	0.654	0.87
112_Y	180_F	0.652	0.86
244_V	298_Q	0.650	0.86
49_Y	259_A	0.649	0.86
136_S	143_I	0.649	0.86
100_T	360_S	0.649	0.86
99_D	103_E	0.647	0.86
319_G	348_L	0.647	0.86
224_S	326_L	0.645	0.86
15_T	75_K	0.645	0.86
20_A	187_E	0.639	0.85
155_F	158_E	0.637	0.85
45_L	259_A	0.636	0.85
215_L	323_N	0.636	0.85
269_I	287_F	0.635	0.85
308_R	332_R	0.635	0.85
14_F	115_I	0.633	0.85
5_I	8_G	0.632	0.85
121_D	179_K	0.630	0.85
63_M	67_K	0.630	0.85
113_K	124_Y	0.629	0.84
348_L	358_Y	0.628	0.84
222_I	307_F	0.628	0.84
154_K	157_I	0.625	0.84
4_G	27_I	0.622	0.84
271_G	283_R	0.621	0.84
46_I	173_S	0.619	0.83
112_Y	339_P	0.617	0.83
230_P	311_S	0.617	0.83
3_V	350_L	0.617	0.83
310_C	331_C	0.616	0.83
290_K	293_E	0.616	0.83
281_S	303_L	0.614	0.83
139_F	165_G	0.611	0.83
319_G	344_Y	0.610	0.83
281_S	284_A	0.608	0.82
258_L	261_S	0.607	0.82
199_V	216_V	0.607	0.82
141_S	146_E	0.605	0.82
202_V	208_I	0.605	0.82
259_A	270_T	0.604	0.82
282_K	286_D	0.603	0.82
153_P	160_I	0.602	0.82
272_G	308_R	0.602	0.82
130_L	166_G	0.601	0.82
174_R	262_P	0.600	0.82
50_R	55_N	0.600	0.82
5_I	195_K	0.599	0.81
156_E	160_I	0.598	0.81
36_G	178_E	0.598	0.81
221_G	237_Y	0.597	0.81
178_E	181_I	0.595	0.81
86_I	89_L	0.595	0.81
101_M	337_Y	0.594	0.81
19_L	24_I	0.592	0.81
11_V	14_F	0.590	0.80
258_L	290_K	0.590	0.80
237_Y	268_K	0.589	0.80
333_L	337_Y	0.589	0.80
310_C	332_R	0.588	0.80
42_A	304_N	0.588	0.80
23_G	26_D	0.587	0.80
69_N	75_K	0.586	0.80
181_I	188_I	0.585	0.80
66_Y	71_S	0.584	0.80
142_G	147_K	0.584	0.80
197_E	210_G	0.583	0.80
43_A	259_A	0.583	0.80
75_K	82_L	0.582	0.80
340_A	356_L	0.581	0.79
17_Y	20_A	0.581	0.79
239_Y	287_F	0.580	0.79
56_T	59_M	0.579	0.79
45_L	66_Y	0.579	0.79
33_G	182_D	0.576	0.79
137_K	140_E	0.576	0.79
65_K	70_G	0.576	0.79
69_N	73_D	0.576	0.79
204_D	322_N	0.576	0.79
115_I	119_K	0.575	0.79
107_F	356_L	0.574	0.79
231_L	309_P	0.572	0.78
56_T	94_P	0.572	0.78
107_F	355_D	0.571	0.78
177_T	223_W	0.569	0.78
10_I	14_F	0.569	0.78
124_Y	173_S	0.568	0.78
61_K	64_L	0.568	0.78
59_M	66_Y	0.567	0.78
8_G	35_L	0.566	0.78
34_F	185_S	0.566	0.78
189_V	195_K	0.565	0.78
308_R	336_S	0.562	0.77
125_H	174_R	0.562	0.77
269_I	273_F	0.562	0.77
270_T	273_F	0.562	0.77
15_T	18_Y	0.559	0.77
13_L	54_I	0.558	0.77
272_G	287_F	0.558	0.77
241_V	244_V	0.558	0.77
327_V	342_G	0.557	0.77
223_W	276_D	0.557	0.77
317_V	328_T	0.556	0.76
266_H	271_G	0.555	0.76
56_T	72_T	0.554	0.76
130_L	133_Y	0.553	0.76
278_S	282_K	0.553	0.76
61_K	68_M	0.552	0.76
356_L	360_S	0.552	0.76
48_P	336_S	0.552	0.76
177_T	335_W	0.551	0.76
248_N	252_V	0.550	0.76
241_V	300_I	0.549	0.76
59_M	85_L	0.549	0.76
155_F	206_G	0.547	0.75
178_E	339_P	0.546	0.75
112_Y	258_L	0.544	0.75
176_S	336_S	0.544	0.75
224_S	231_L	0.542	0.75
89_L	93_P	0.541	0.74
70_G	282_K	0.541	0.74
63_M	75_K	0.541	0.74
42_A	53_K	0.540	0.74
59_M	73_D	0.539	0.74
269_I	272_G	0.538	0.74
5_I	20_A	0.538	0.74
315_F	360_S	0.537	0.74
159_E	297_I	0.537	0.74
15_T	349_A	0.536	0.74
45_L	252_V	0.536	0.74
101_M	333_L	0.535	0.74
21_K	61_K	0.533	0.73
185_S	192_I	0.533	0.73
321_R	324_L	0.531	0.73
273_F	332_R	0.531	0.73
290_K	294_L	0.530	0.73
34_F	37_A	0.530	0.73
267_I	270_T	0.529	0.73
123_D	263_L	0.529	0.73
204_D	208_I	0.529	0.73
155_F	162_G	0.528	0.73
293_E	296_D	0.528	0.73
279_I	284_A	0.527	0.73
152_N	161_K	0.527	0.73
280_D	283_R	0.525	0.72
330_A	337_Y	0.525	0.72
50_R	333_L	0.525	0.72
180_F	339_P	0.525	0.72
284_A	291_A	0.524	0.72
154_K	160_I	0.523	0.72
17_Y	188_I	0.522	0.72
51_F	55_N	0.520	0.72
17_Y	119_K	0.520	0.72
126_E	171_E	0.520	0.72
246_K	251_A	0.520	0.72
103_E	106_K	0.520	0.72
31_E	36_G	0.519	0.71
81_W	101_M	0.519	0.71
108_S	111_E	0.518	0.71
29_I	70_G	0.518	0.71
52_D	56_T	0.518	0.71
110_S	113_K	0.517	0.71
132_L	138_E	0.515	0.71
304_N	334_G	0.515	0.71
50_R	131_E	0.513	0.71
80_L	84_E	0.513	0.71
267_I	271_G	0.513	0.71
180_F	338_G	0.513	0.71
136_S	165_G	0.513	0.71
36_G	41_H	0.511	0.70
243_G	246_K	0.511	0.70
62_K	71_S	0.510	0.70
53_K	72_T	0.510	0.70
147_K	209_D	0.508	0.70
113_K	356_L	0.506	0.70
47_E	333_L	0.503	0.69
180_F	238_G	0.503	0.69
277_F	307_F	0.501	0.69
29_I	199_V	0.500	0.69
341_M	358_Y	0.500	0.69

Legend: The i and j are positions as given in the UniProt sequence. Only predictions with Prob ≥ 0.7 are listed. For all 3L/2 predictions, click on one of the links below.

Sco = ((raw_sco - min_sco)/(avg_sco - min_sco))/2 + 0.5
Prob = P(contact | Sco, seq80/√len)
seq80 = effective number of sequences, after reducing redundancy to 80% identity

Text file of predictions (all 3L/2 predictions)
Generate restraints for ROSETTA Structure Modeling
Upload PDB model overlay contacts on the model

HHsearch Results:

Legend: GREMLIN results (Prob ≥ 0.7) overlaid on top PDB hits. The grey/red filled circles underneath are pdb residue contacts (min distance < 5 Angstroms). The shade of the circles is based on the top 10 (or top 20 if e-value < 1E-20) HHsearch results which uses the overall probability and per-site alignment prob. Inter oligomeric contacts in the pdb are in shades of red.

PDB	Chains	Cov	%	HHΔ
4h1bA	1	0.8685	100	0.401	Contact Map
1c0pA	2	0.8219	100	0.439	Contact Map
3axbA	2	0.8712	100	0.44	Contact Map
3pvcA	1	0.8849	100	0.444	Contact Map
1y56B	1	0.8712	100	0.447	Contact Map
2gf3A	1	0.8767	100	0.45	Contact Map
4rslA	1	0.874	100	0.454	Contact Map
1ryiA	4	0.8795	100	0.455	Contact Map
4x9mA	1	0.874	100	0.457	Contact Map
3wgtA	2	0.8521	100	0.46	Contact Map

Sequence Conservation (Image Generated using WebLogo v3)

Legend: Color is used to show Hydrophobicity (Blue: Hydrophilic, Green: Neutral and Black: Hydrophobic). Amount of gaps is represented by width.

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