Q97ZC2 - SULSO - GREMLIN Contacts

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Q97ZC2 - Maltose transport inner membrane protein

UniProt:	Q97ZC2	Sequences: MNKVKLTFFLLVLPALAYVISFAFFPTIEAVYLSFQDPHGGFSLYNYKELSYFNLSSAIINTIVVTIGALAIQLALGFLVASVLSREFFGKRALSTITIIPMGIATVVAAVTFSFVFQTSGGYANTILHSLFGLNVNWYQSSISSLLVVMIADSWKNTPIVALILLAGMSSIPKELYYASAIDGAGPIRRFFYITLPNLRSFIGISLILRGVQEFNIFALPLILIGEHPPLLTTLIYDLYTTTFPEVGLALASATILLGFILVFSGIVIKLSGGR	Download Alignment We filter this alignment to remove sites that have many gaps before running GREMLIN. Date: 2015_01
Length:	275 (244)
Sequences:	71320 (45547)
Seq/√Len:	2915.9

ECOLI - UGPA YDCU YCJO POTH THIP UGPE POTB MALF MALG POTI YCJP PSTC YNJC CYST CYSW YDCV POTC PSTA MODB YEHY SSUC TAUC PHNE YEHW METI PROW YECS GLNP
BACSU - GANP AMYD ARAP YURN MDXF YTEP YESP LPLB AMYC MDXG GANQ YURM YESQ YTCP YQGI YQGH ARAQ LPLC YVGM YTLD TCYB SSUC OPUAB YXEN TCYL METP OPUCB OPUBB OPUBD OPUCD ARTQ
HALSA - Q9HMT4 Q9HHQ7 Q9HP01 Q9HML6 Q9HR05 Q9HP02 Q9HHQ6 Q9HPK3 Q9HS11 Q9HNI9 Q9HS12
SULSO - Q97ZC2 Q97YY2 Q97UZ0 Q97UF4 Q97YY3 Q97ZT7 Q97UF3 Q97UY9 Q97ZT6 Q97VC0 Q97ZC1 Q97Z98

GREMLIN Results:

Legend: The darker and larger the blue dots, the higher coevolution strength.

Residue pairs sorted by coevolution strength:

i	j	Sco	Prob
189_R	193_Y	4.184	1.00
60_I	64_V	3.318	1.00
166_L	170_S	3.037	1.00
181_A	190_R	2.999	1.00
86_R	177_Y	2.726	1.00
34_S	47_Y	2.694	1.00
177_Y	195_T	2.685	1.00
57_S	60_I	2.633	1.00
180_S	190_R	2.624	1.00
168_G	202_F	2.595	1.00
68_G	150_M	2.531	1.00
186_G	189_R	2.529	1.00
72_I	154_S	2.495	1.00
45_Y	48_K	2.442	1.00
70_L	207_L	2.409	1.00
56_S	60_I	2.364	1.00
187_P	190_R	2.317	1.00
188_I	192_F	2.298	1.00
45_Y	49_E	2.288	1.00
165_L	203_I	2.271	1.00
246_E	249_L	2.235	1.00
48_K	51_S	2.221	1.00
88_F	91_K	2.172	1.00
185_A	189_R	2.138	1.00
189_R	192_F	2.088	1.00
78_F	191_F	2.066	1.00
161_V	206_S	2.031	1.00
169_M	199_L	1.983	1.00
85_S	170_S	1.974	1.00
176_L	198_N	1.906	1.00
32_Y	36_Q	1.878	1.00
180_S	185_A	1.874	1.00
64_V	146_L	1.861	1.00
74_L	207_L	1.860	1.00
95_S	166_L	1.841	1.00
78_F	199_L	1.813	1.00
177_Y	190_R	1.798	1.00
181_A	187_P	1.788	1.00
66_T	211_G	1.761	1.00
57_S	61_N	1.745	1.00
238_D	242_T	1.736	1.00
28_I	32_Y	1.709	1.00
77_G	161_V	1.690	1.00
266_G	270_K	1.669	1.00
84_L	162_A	1.663	1.00
177_Y	181_A	1.631	1.00
69_A	214_E	1.631	1.00
78_F	165_L	1.618	1.00
64_V	68_G	1.613	1.00
80_V	162_A	1.611	1.00
49_E	249_L	1.603	1.00
31_V	255_T	1.598	1.00
87_E	91_K	1.553	1.00
161_V	210_R	1.540	1.00
25_F	29_E	1.516	1.00
81_A	165_L	1.481	1.00
174_K	177_Y	1.477	1.00
58_A	236_I	1.469	1.00
13_L	17_A	1.469	1.00
75_A	79_L	1.468	1.00
90_G	93_A	1.452	1.00
43_S	46_N	1.433	1.00
196_L	203_I	1.427	1.00
85_S	166_L	1.412	1.00
44_L	48_K	1.407	1.00
29_E	33_L	1.391	1.00
218_F	222_L	1.382	1.00
169_M	195_T	1.375	1.00
205_I	209_L	1.362	1.00
165_L	206_S	1.330	1.00
86_R	174_K	1.325	1.00
73_Q	210_R	1.321	1.00
180_S	194_I	1.267	1.00
220_L	224_L	1.266	1.00
78_F	203_I	1.266	1.00
234_T	237_Y	1.265	1.00
174_K	178_Y	1.263	1.00
238_D	241_T	1.258	1.00
233_T	241_T	1.254	1.00
82_S	169_M	1.237	1.00
175_E	178_Y	1.236	1.00
236_I	239_L	1.232	1.00
152_A	224_L	1.218	1.00
172_I	198_N	1.201	1.00
47_Y	255_T	1.197	1.00
71_A	75_A	1.187	1.00
117_F	148_V	1.184	1.00
186_G	190_R	1.183	1.00
68_G	71_A	1.182	1.00
93_A	96_T	1.163	1.00
227_E	230_P	1.149	1.00
158_T	162_A	1.144	1.00
54_N	57_S	1.143	1.00
17_A	21_S	1.142	1.00
61_N	64_V	1.141	1.00
149_V	221_P	1.129	1.00
241_T	245_P	1.125	1.00
200_R	204_G	1.110	1.00
146_L	150_M	1.100	1.00
49_E	52_Y	1.090	1.00
85_S	169_M	1.084	1.00
30_A	255_T	1.082	1.00
74_L	203_I	1.081	1.00
69_A	153_D	1.062	1.00
164_I	206_S	1.060	1.00
72_I	150_M	1.059	1.00
93_A	97_I	1.056	1.00
198_N	201_S	1.053	1.00
267_I	271_L	1.051	1.00
165_L	202_F	1.045	1.00
233_T	238_D	1.038	1.00
79_L	83_V	1.031	1.00
82_S	191_F	1.030	1.00
150_M	154_S	1.026	1.00
217_I	221_P	1.025	1.00
68_G	72_I	1.024	1.00
147_L	151_I	0.997	1.00
185_A	190_R	0.993	1.00
217_I	220_L	0.991	1.00
177_Y	187_P	0.984	1.00
10_L	14_P	0.983	1.00
46_N	248_G	0.982	1.00
91_K	170_S	0.979	1.00
153_D	214_E	0.978	1.00
55_L	253_S	0.975	1.00
190_R	193_Y	0.974	1.00
69_A	73_Q	0.972	1.00
63_I	67_I	0.960	1.00
38_P	41_G	0.959	1.00
61_N	146_L	0.952	1.00
115_F	119_T	0.951	1.00
9_F	13_L	0.947	1.00
89_F	92_R	0.947	1.00
64_V	147_L	0.943	1.00
33_L	251_L	0.943	1.00
82_S	187_P	0.938	1.00
10_L	13_L	0.934	1.00
81_A	85_S	0.928	1.00
67_I	71_A	0.928	1.00
29_E	32_Y	0.925	1.00
12_V	16_L	0.913	1.00
62_T	235_L	0.912	1.00
99_I	163_L	0.912	1.00
242_T	246_E	0.909	1.00
165_L	199_L	0.908	1.00
113_F	152_A	0.907	1.00
59_I	63_I	0.905	1.00
200_R	203_I	0.904	1.00
33_L	36_Q	0.902	1.00
113_F	224_L	0.895	1.00
71_A	207_L	0.895	1.00
77_G	162_A	0.894	1.00
199_L	202_F	0.893	1.00
168_G	199_L	0.888	1.00
64_V	67_I	0.880	1.00
50_L	256_I	0.880	1.00
65_V	146_L	0.876	1.00
152_A	220_L	0.876	1.00
69_A	150_M	0.865	1.00
123_Y	147_L	0.862	1.00
225_I	230_P	0.856	1.00
20_I	24_F	0.855	1.00
81_A	162_A	0.851	1.00
192_F	196_L	0.848	1.00
73_Q	77_G	0.847	1.00
35_F	42_F	0.846	1.00
191_F	196_L	0.840	1.00
106_T	156_K	0.839	1.00
83_V	88_F	0.837	1.00
161_V	165_L	0.835	1.00
185_A	193_Y	0.830	1.00
68_G	154_S	0.826	1.00
72_I	75_A	0.826	1.00
30_A	251_L	0.826	1.00
261_I	265_S	0.825	1.00
81_A	169_M	0.820	1.00
92_R	95_S	0.820	1.00
147_L	150_M	0.816	1.00
190_R	195_T	0.816	1.00
114_S	118_Q	0.806	1.00
267_I	270_K	0.791	1.00
84_L	95_S	0.788	1.00
210_R	214_E	0.787	1.00
70_L	211_G	0.782	1.00
58_A	61_N	0.781	1.00
44_L	47_Y	0.781	1.00
60_I	63_I	0.779	1.00
65_V	153_D	0.778	1.00
145_S	148_V	0.775	1.00
73_Q	157_N	0.774	1.00
242_T	245_P	0.771	1.00
148_V	152_A	0.768	1.00
110_A	219_A	0.768	1.00
249_L	253_S	0.766	1.00
263_V	267_I	0.765	1.00
33_L	37_D	0.763	1.00
146_L	230_P	0.761	1.00
84_L	94_L	0.755	1.00
14_P	17_A	0.755	1.00
73_Q	161_V	0.753	1.00
99_I	102_M	0.751	1.00
74_L	165_L	0.750	1.00
77_G	165_L	0.748	1.00
165_L	169_M	0.745	1.00
37_D	41_G	0.745	1.00
238_D	253_S	0.743	1.00
110_A	223_I	0.739	1.00
66_T	70_L	0.737	1.00
49_E	246_E	0.735	1.00
233_T	237_Y	0.732	1.00
176_L	194_I	0.731	1.00
187_P	191_F	0.731	1.00
149_V	225_I	0.730	1.00
25_F	28_I	0.725	1.00
191_F	195_T	0.725	1.00
37_D	40_G	0.724	1.00
231_L	239_L	0.724	1.00
122_G	125_N	0.722	1.00
236_I	240_Y	0.721	1.00
35_F	43_S	0.718	1.00
11_L	15_A	0.716	1.00
174_K	181_A	0.711	1.00
232_L	236_I	0.708	1.00
237_Y	240_Y	0.707	1.00
200_R	271_L	0.707	1.00
247_V	250_A	0.706	1.00
30_A	254_A	0.703	1.00
36_Q	39_H	0.702	1.00
268_V	271_L	0.698	1.00
221_P	234_T	0.698	1.00
80_V	158_T	0.697	1.00
172_I	199_L	0.694	1.00
157_N	210_R	0.694	1.00
179_A	183_D	0.690	1.00
11_L	14_P	0.690	1.00
84_L	166_L	0.686	1.00
46_N	49_E	0.685	1.00
19_V	23_A	0.685	1.00
247_V	251_L	0.684	1.00
56_S	59_I	0.683	1.00
42_F	45_Y	0.679	1.00
58_A	238_D	0.678	1.00
243_T	250_A	0.674	1.00
76_L	154_S	0.672	1.00
106_T	219_A	0.672	1.00
20_I	23_A	0.672	1.00
109_A	155_W	0.671	1.00
237_Y	241_T	0.669	1.00
26_P	30_A	0.668	1.00
16_L	20_I	0.665	1.00
203_I	206_S	0.663	1.00
241_T	244_F	0.655	1.00
50_L	249_L	0.654	1.00
41_G	44_L	0.651	1.00
36_Q	41_G	0.649	1.00
87_E	92_R	0.649	1.00
95_S	163_L	0.648	1.00
195_T	198_N	0.647	1.00
50_L	253_S	0.644	1.00
125_N	227_E	0.643	1.00
73_Q	214_E	0.643	1.00
47_Y	252_A	0.642	1.00
70_L	74_L	0.640	1.00
34_S	252_A	0.638	1.00
251_L	255_T	0.637	1.00
225_I	229_P	0.635	1.00
102_M	159_P	0.633	1.00
203_I	207_L	0.626	1.00
80_V	98_T	0.622	1.00
179_A	182_I	0.621	1.00
52_Y	56_S	0.621	1.00
117_F	124_A	0.620	1.00
148_V	224_L	0.620	1.00
62_T	215_F	0.618	1.00
157_N	213_Q	0.615	1.00
118_Q	124_A	0.615	1.00
149_V	153_D	0.613	1.00
251_L	254_A	0.613	1.00
88_F	94_L	0.613	1.00
65_V	150_M	0.613	1.00
228_H	231_L	0.612	1.00
15_A	19_V	0.611	1.00
202_F	206_S	0.609	1.00
65_V	149_V	0.608	1.00
186_G	192_F	0.604	1.00
39_H	42_F	0.601	1.00
107_V	223_I	0.598	1.00
51_S	54_N	0.598	1.00
9_F	12_V	0.596	1.00
73_Q	154_S	0.592	1.00
190_R	194_I	0.592	1.00
98_T	159_P	0.591	1.00
145_S	233_T	0.591	1.00
257_L	261_I	0.588	1.00
164_I	202_F	0.586	1.00
116_V	124_A	0.582	1.00
222_L	237_Y	0.582	1.00
53_F	56_S	0.581	1.00
249_L	252_A	0.581	1.00
262_L	266_G	0.579	1.00
34_S	255_T	0.579	1.00
115_F	118_Q	0.577	1.00
236_I	242_T	0.577	1.00
41_G	45_Y	0.575	1.00
31_V	35_F	0.575	1.00
43_S	47_Y	0.574	1.00
212_V	216_N	0.573	1.00
248_G	251_L	0.573	1.00
218_F	240_Y	0.571	1.00
69_A	154_S	0.569	1.00
70_L	214_E	0.568	1.00
90_G	94_L	0.568	1.00
81_A	166_L	0.567	1.00
234_T	238_D	0.563	1.00
31_V	34_S	0.563	1.00
225_I	231_L	0.562	1.00
66_T	215_F	0.561	1.00
234_T	239_L	0.561	1.00
204_G	207_L	0.560	1.00
66_T	214_E	0.557	1.00
113_F	116_V	0.556	1.00
153_D	217_I	0.556	1.00
82_S	195_T	0.555	1.00
217_I	234_T	0.554	1.00
102_M	160_I	0.554	1.00
65_V	232_L	0.553	1.00
92_R	96_T	0.552	1.00
240_Y	244_F	0.549	1.00
242_T	253_S	0.549	1.00
219_A	222_L	0.546	1.00
76_L	158_T	0.545	1.00
21_S	25_F	0.544	1.00
195_T	199_L	0.544	1.00
74_L	78_F	0.541	1.00
242_T	249_L	0.539	1.00
96_T	100_I	0.534	1.00
26_P	31_V	0.534	1.00
94_L	98_T	0.533	1.00
87_E	174_K	0.532	1.00
219_A	223_I	0.532	1.00
213_Q	216_N	0.531	1.00
13_L	16_L	0.531	1.00
62_T	234_T	0.529	1.00
192_F	195_T	0.529	1.00
178_Y	181_A	0.528	1.00
260_F	263_V	0.528	1.00
153_D	221_P	0.526	1.00
38_P	42_F	0.526	1.00
89_F	93_A	0.524	1.00
207_L	210_R	0.524	1.00
65_V	69_A	0.523	1.00
240_Y	243_T	0.522	1.00
101_P	159_P	0.522	1.00
80_V	83_V	0.521	1.00
229_P	233_T	0.520	1.00
172_I	177_Y	0.519	1.00
36_Q	40_G	0.517	1.00
145_S	232_L	0.517	1.00
73_Q	158_T	0.511	1.00
84_L	88_F	0.510	1.00
53_F	57_S	0.509	1.00
214_E	217_I	0.506	1.00
206_S	210_R	0.505	1.00
52_Y	249_L	0.504	1.00
59_I	256_I	0.502	1.00
34_S	37_D	0.500	1.00

Legend: The i and j are positions as given in the UniProt sequence. Only predictions with Prob ≥ 0.7 are listed. For all 3L/2 predictions, click on one of the links below.

Sco = ((raw_sco - min_sco)/(avg_sco - min_sco))/2 + 0.5
Prob = P(contact | Sco, seq80/√len)
seq80 = effective number of sequences, after reducing redundancy to 80% identity

Text file of predictions (all 3L/2 predictions)
Generate restraints for ROSETTA Structure Modeling
Upload PDB model overlay contacts on the model

HHsearch Results:

Legend: GREMLIN results (Prob ≥ 0.7) overlaid on top PDB hits. The grey/red filled circles underneath are pdb residue contacts (min distance < 5 Angstroms). The shade of the circles is based on the top 10 (or top 20 if e-value < 1E-20) HHsearch results which uses the overall probability and per-site alignment prob. Inter oligomeric contacts in the pdb are in shades of red.

PDB	Chains	Cov	%	HHΔ
4tquM	1	0.9782	100	0.285	Contact Map
2onkC	2	0.9018	100	0.303	Contact Map
3rlfF	1	0.9564	100	0.319	Contact Map
3d31C	2	0.8909	100	0.324	Contact Map
3rlfG	1	0.9236	100	0.337	Contact Map
4tquN	1	0.8982	100	0.36	Contact Map
4ymuD	2	0.7745	99.9	0.472	Contact Map
3tuiA	2	0.7491	99.9	0.502	Contact Map
2k1eA	3	0.3236	9.3	0.946	Contact Map
1iijA	1	0.1236	4.7	0.953	Contact Map

Sequence Conservation (Image Generated using WebLogo v3)

Legend: Color is used to show Hydrophobicity (Blue: Hydrophilic, Green: Neutral and Black: Hydrophobic). Amount of gaps is represented by width.

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