Q97ZC1 - SULSO - GREMLIN Contacts

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Q97ZC1 - Sugar ABC transporter

UniProt:	Q97ZC1	Sequences: MRLWVYLGAIVVGIYFLFPLYILVLLAFNSPKYTVLAKFPSLLPVSLTLNNLLTALQGTAFIDPFIKSLETATLVGIITIALAIPAGYGLSRLPRAIAYSIIILLLVTNMMPAIVIGIPIAVDFLKLHLFESVVGLALAQTLITLPLATFILQGTFSSIPIDLEHQARVDGANLFNRLFSVLLPLAAPGIAAAFLISWMFSWDEFTYAILLIPYHSTLPVTIYQDVTRGNLLAGIAFSLIFTLPVIILTFALQKYLRGEYLAGGIKG	Download Alignment We filter this alignment to remove sites that have many gaps before running GREMLIN. Date: 2015_01
Length:	267 (245)
Sequences:	68405 (45179)
Seq/√Len:	2886.4

ECOLI - YCJP MALG UGPE YDCV POTH YCJO POTC UGPA YDCU POTB POTI PSTA PSTC YNJC THIP CYST MALF CYSW MODB SSUC TAUC YEHY YEHW PHNE METI PROW YECS GLNP
BACSU - MDXG AMYC GANQ YESQ YTCP YURM ARAQ LPLC GANP MDXF ARAP AMYD YURN YTEP LPLB YESP YQGH YQGI YVGM SSUC YTLD TCYB METP OPUAB YXEN TCYL OPUCB OPUBB OPUBD OPUCD ARTQ
HALSA - Q9HP02 Q9HML6 Q9HHQ6 Q9HMT4 Q9HP01 Q9HHQ7 Q9HS11 Q9HPK3 Q9HR05 Q9HNI9 Q9HS12
SULSO - Q97ZC1 Q97UF3 Q97UY9 Q97YY3 Q97UZ0 Q97YY2 Q97UF4 Q97VC0 Q97ZT6 Q97ZT7 Q97ZC2 Q97Z98

GREMLIN Results:

Legend: The darker and larger the blue dots, the higher coevolution strength.

Residue pairs sorted by coevolution strength:

i	j	Sco	Prob
176_N	180_S	4.123	1.00
66_I	70_E	3.272	1.00
168_R	177_R	3.120	1.00
153_Q	157_S	3.060	1.00
27_A	52_L	2.772	1.00
64_P	221_T	2.731	1.00
92_R	164_E	2.676	1.00
63_D	66_I	2.650	1.00
164_E	182_L	2.635	1.00
167_A	177_R	2.576	1.00
74_L	137_A	2.552	1.00
155_T	189_G	2.515	1.00
173_N	176_N	2.457	1.00
78_I	141_T	2.452	1.00
216_S	224_Q	2.450	1.00
50_N	53_L	2.435	1.00
53_L	57_Q	2.392	1.00
76_G	194_F	2.386	1.00
62_I	66_I	2.381	1.00
174_L	177_R	2.329	1.00
230_N	233_A	2.316	1.00
152_L	190_I	2.302	1.00
175_F	179_F	2.290	1.00
50_N	54_T	2.252	1.00
95_R	98_A	2.145	1.00
176_N	179_F	2.077	1.00
172_A	176_N	2.065	1.00
84_I	178_L	2.061	1.00
148_A	193_A	1.993	1.00
91_S	157_S	1.993	1.00
163_L	185_L	1.929	1.00
156_F	186_A	1.929	1.00
167_A	172_A	1.916	1.00
102_I	153_Q	1.864	1.00
84_I	186_A	1.856	1.00
80_I	194_F	1.833	1.00
25_L	29_N	1.819	1.00
21_Y	25_L	1.812	1.00
168_R	174_L	1.789	1.00
164_E	177_R	1.752	1.00
63_D	67_K	1.749	1.00
72_A	198_W	1.727	1.00
83_A	148_A	1.701	1.00
84_I	152_L	1.645	1.00
70_E	74_L	1.644	1.00
54_T	233_A	1.635	1.00
90_L	149_T	1.625	1.00
75_V	201_S	1.621	1.00
18_F	22_I	1.585	1.00
86_A	149_T	1.578	1.00
164_E	168_R	1.574	1.00
24_V	239_L	1.513	1.00
148_A	197_S	1.493	1.00
94_P	98_A	1.480	1.00
97_I	100_S	1.480	1.00
205_F	209_I	1.471	1.00
161_I	164_E	1.465	1.00
54_T	57_Q	1.455	1.00
71_T	217_T	1.452	1.00
91_S	153_Q	1.438	1.00
87_G	152_L	1.418	1.00
192_A	196_I	1.414	1.00
81_A	85_P	1.413	1.00
183_L	190_I	1.411	1.00
6_Y	10_I	1.410	1.00
48_T	51_N	1.384	1.00
60_A	63_D	1.383	1.00
156_F	182_L	1.373	1.00
152_L	193_A	1.352	1.00
79_T	197_S	1.347	1.00
49_L	53_L	1.330	1.00
22_I	26_L	1.319	1.00
167_A	181_V	1.296	1.00
161_I	165_H	1.294	1.00
254_K	257_R	1.276	1.00
139_A	211_L	1.276	1.00
92_R	161_I	1.274	1.00
162_D	165_H	1.229	1.00
205_F	223_Y	1.225	1.00
216_S	221_T	1.225	1.00
84_I	190_I	1.221	1.00
207_Y	211_L	1.216	1.00
88_Y	156_F	1.216	1.00
74_L	77_I	1.211	1.00
100_S	103_I	1.203	1.00
52_L	239_L	1.199	1.00
159_I	185_L	1.190	1.00
77_I	81_A	1.176	1.00
67_K	70_E	1.170	1.00
173_N	177_R	1.166	1.00
136_L	208_A	1.148	1.00
80_I	190_I	1.136	1.00
10_I	14_I	1.129	1.00
23_L	239_L	1.128	1.00
137_A	141_T	1.126	1.00
187_A	191_A	1.119	1.00
145_L	149_T	1.119	1.00
204_E	207_Y	1.107	1.00
250_F	254_K	1.101	1.00
132_S	135_G	1.098	1.00
100_S	104_L	1.077	1.00
54_T	58_G	1.070	1.00
129_L	134_V	1.069	1.00
208_A	217_T	1.067	1.00
152_L	189_G	1.065	1.00
74_L	78_I	1.058	1.00
75_V	140_Q	1.056	1.00
68_S	218_L	1.054	1.00
151_I	193_A	1.054	1.00
56_L	62_I	1.052	1.00
131_E	135_G	1.046	1.00
85_P	89_G	1.044	1.00
88_Y	178_L	1.042	1.00
185_L	188_P	1.040	1.00
91_S	156_F	1.036	1.00
221_T	237_F	1.035	1.00
217_T	220_V	1.035	1.00
78_I	137_A	1.034	1.00
75_V	79_T	1.023	1.00
98_A	157_S	1.020	1.00
164_E	174_L	1.018	1.00
26_L	235_I	1.004	1.00
88_Y	174_L	0.997	1.00
61_F	237_F	0.992	1.00
224_Q	227_T	0.991	1.00
122_V	126_K	0.989	1.00
22_I	25_L	0.988	1.00
172_A	177_R	0.986	1.00
216_S	220_V	0.981	1.00
177_R	180_S	0.977	1.00
204_E	208_A	0.971	1.00
69_L	73_T	0.953	1.00
65_F	218_L	0.946	1.00
140_Q	201_S	0.935	1.00
41_S	44_P	0.920	1.00
221_T	224_Q	0.913	1.00
41_S	45_V	0.908	1.00
87_G	91_S	0.906	1.00
43_L	46_S	0.903	1.00
75_V	137_A	0.898	1.00
70_E	73_T	0.891	1.00
209_I	220_V	0.891	1.00
120_I	211_L	0.888	1.00
77_I	194_F	0.885	1.00
96_A	99_Y	0.885	1.00
106_L	150_F	0.884	1.00
73_T	77_I	0.881	1.00
155_T	186_A	0.878	1.00
212_I	216_S	0.877	1.00
79_T	83_A	0.877	1.00
113_A	143_I	0.877	1.00
187_A	190_I	0.872	1.00
5_V	9_A	0.866	1.00
251_A	255_Y	0.863	1.00
65_F	69_L	0.857	1.00
27_A	31_P	0.854	1.00
55_A	240_I	0.854	1.00
179_F	183_L	0.853	1.00
139_A	207_Y	0.852	1.00
148_A	152_L	0.849	1.00
121_A	125_L	0.848	1.00
152_L	186_A	0.847	1.00
120_I	139_A	0.847	1.00
78_I	81_A	0.847	1.00
87_G	149_T	0.842	1.00
26_L	29_N	0.842	1.00
186_A	189_G	0.842	1.00
178_L	183_L	0.836	1.00
70_E	133_V	0.835	1.00
197_S	201_S	0.834	1.00
224_Q	228_R	0.834	1.00
83_A	149_T	0.833	1.00
74_L	141_T	0.823	1.00
177_R	182_L	0.819	1.00
19_P	23_L	0.818	1.00
90_L	102_I	0.811	1.00
51_N	232_L	0.805	1.00
13_G	17_L	0.805	1.00
245_V	249_T	0.803	1.00
71_T	140_Q	0.802	1.00
87_G	156_F	0.802	1.00
129_L	132_S	0.800	1.00
26_L	30_S	0.799	1.00
89_G	95_R	0.799	1.00
117_G	206_T	0.798	1.00
99_Y	102_I	0.796	1.00
187_A	255_Y	0.793	1.00
79_T	144_T	0.790	1.00
18_F	21_Y	0.785	1.00
66_I	69_L	0.783	1.00
23_L	235_I	0.777	1.00
163_L	181_V	0.774	1.00
28_F	47_L	0.772	1.00
226_V	229_G	0.771	1.00
30_S	45_V	0.770	1.00
117_G	210_L	0.763	1.00
80_I	152_L	0.763	1.00
64_P	67_K	0.763	1.00
86_A	145_L	0.760	1.00
178_L	182_L	0.756	1.00
83_A	152_L	0.750	1.00
172_A	180_S	0.747	1.00
30_S	46_S	0.747	1.00
19_P	26_L	0.746	1.00
152_L	156_F	0.743	1.00
174_L	178_L	0.742	1.00
125_L	130_F	0.741	1.00
106_L	109_N	0.738	1.00
29_N	44_P	0.736	1.00
225_D	234_G	0.735	1.00
26_L	31_P	0.734	1.00
225_D	229_G	0.729	1.00
247_I	251_A	0.727	1.00
116_I	142_L	0.726	1.00
90_L	101_I	0.726	1.00
90_L	153_Q	0.725	1.00
54_T	230_N	0.723	1.00
72_A	76_G	0.722	1.00
79_T	148_A	0.721	1.00
76_G	198_W	0.720	1.00
190_I	193_A	0.714	1.00
235_I	239_L	0.713	1.00
7_L	10_I	0.712	1.00
233_A	237_F	0.710	1.00
28_F	48_T	0.707	1.00
161_I	168_R	0.707	1.00
222_I	237_F	0.706	1.00
23_L	238_S	0.700	1.00
166_Q	170_D	0.696	1.00
62_I	65_F	0.695	1.00
159_I	186_A	0.694	1.00
221_T	225_D	0.691	1.00
49_L	52_L	0.690	1.00
219_P	241_F	0.690	1.00
46_S	49_L	0.688	1.00
113_A	206_T	0.687	1.00
235_I	238_S	0.687	1.00
64_P	218_L	0.685	1.00
131_E	214_Y	0.684	1.00
136_L	140_Q	0.682	1.00
144_T	200_F	0.673	1.00
29_N	46_S	0.671	1.00
12_V	16_F	0.669	1.00
76_G	80_I	0.666	1.00
102_I	150_F	0.665	1.00
55_A	237_F	0.665	1.00
51_N	54_T	0.664	1.00
58_G	62_I	0.663	1.00
82_L	141_T	0.661	1.00
182_L	185_L	0.661	1.00
13_G	16_F	0.660	1.00
56_L	59_T	0.660	1.00
144_T	197_S	0.659	1.00
79_T	201_S	0.656	1.00
124_F	130_F	0.656	1.00
89_G	93_L	0.655	1.00
47_L	50_N	0.654	1.00
130_F	133_V	0.653	1.00
136_L	212_I	0.650	1.00
220_V	224_Q	0.649	1.00
71_T	136_L	0.649	1.00
53_L	56_L	0.648	1.00
246_I	250_F	0.647	1.00
68_S	219_P	0.646	1.00
52_L	236_A	0.644	1.00
55_A	233_A	0.644	1.00
82_L	145_L	0.643	1.00
208_A	212_I	0.640	1.00
19_P	27_A	0.640	1.00
223_Y	227_T	0.638	1.00
166_Q	169_V	0.635	1.00
189_G	193_A	0.634	1.00
94_P	99_Y	0.633	1.00
14_I	18_F	0.632	1.00
95_R	101_I	0.624	1.00
109_N	146_P	0.622	1.00
114_I	210_L	0.620	1.00
60_A	221_T	0.620	1.00
29_N	45_V	0.617	1.00
204_E	217_T	0.614	1.00
218_L	241_F	0.612	1.00
8_G	12_V	0.610	1.00
97_I	101_I	0.610	1.00
122_V	125_L	0.610	1.00
71_T	137_A	0.610	1.00
86_A	105_L	0.608	1.00
60_A	216_S	0.605	1.00
190_I	194_F	0.605	1.00
105_L	146_P	0.603	1.00
208_A	220_V	0.598	1.00
200_F	203_D	0.597	1.00
46_S	50_N	0.590	1.00
120_I	123_D	0.589	1.00
68_S	202_W	0.589	1.00
79_T	141_T	0.589	1.00
31_P	44_P	0.586	1.00
109_N	147_L	0.585	1.00
71_T	75_V	0.584	1.00
206_T	209_I	0.581	1.00
72_A	202_W	0.581	1.00
231_L	235_I	0.578	1.00
59_T	63_D	0.578	1.00
48_T	52_L	0.578	1.00
19_P	24_V	0.576	1.00
179_F	182_L	0.571	1.00
151_I	189_G	0.570	1.00
231_L	234_G	0.570	1.00
123_D	130_F	0.568	1.00
75_V	141_T	0.566	1.00
96_A	100_S	0.566	1.00
87_G	153_Q	0.565	1.00
140_Q	143_I	0.565	1.00
130_F	135_G	0.564	1.00
173_N	179_F	0.560	1.00
177_R	181_V	0.560	1.00
27_A	239_L	0.558	1.00
191_A	194_F	0.557	1.00
27_A	236_A	0.554	1.00
127_L	130_F	0.554	1.00
99_Y	103_I	0.554	1.00
252_L	255_Y	0.554	1.00
199_M	203_D	0.552	1.00
72_A	201_S	0.552	1.00
251_A	254_K	0.550	1.00
44_P	47_L	0.549	1.00
59_T	62_I	0.548	1.00
24_V	28_F	0.548	1.00
9_A	13_G	0.548	1.00
103_I	107_V	0.548	1.00
194_F	197_S	0.545	1.00
201_S	204_E	0.544	1.00
206_T	210_L	0.543	1.00
241_F	245_V	0.542	1.00
17_L	21_Y	0.540	1.00
250_F	253_Q	0.539	1.00
80_I	84_I	0.538	1.00
140_Q	204_E	0.537	1.00
143_I	146_P	0.536	1.00
93_L	174_L	0.533	1.00
101_I	105_L	0.533	1.00
129_L	133_V	0.533	1.00
193_A	197_S	0.533	1.00
113_A	117_G	0.532	1.00
88_Y	182_L	0.531	1.00
58_G	233_A	0.528	1.00
76_G	201_S	0.528	1.00
94_P	161_I	0.527	1.00
42_L	45_V	0.527	1.00
71_T	133_V	0.525	1.00
108_T	146_P	0.525	1.00
127_L	132_S	0.524	1.00
67_K	217_T	0.523	1.00
86_A	89_G	0.523	1.00
182_L	186_A	0.520	1.00
244_P	247_I	0.518	1.00
247_I	250_F	0.513	1.00
140_Q	208_A	0.511	1.00
225_D	228_R	0.509	1.00
166_Q	172_A	0.506	1.00
131_E	134_V	0.505	1.00
159_I	164_E	0.504	1.00
220_V	223_Y	0.504	1.00
137_A	140_Q	0.502	1.00
116_I	143_I	0.501	1.00
19_P	22_I	0.501	1.00
111_M	115_V	0.501	1.00
165_H	168_R	0.501	1.00
102_I	157_S	0.500	1.00

Legend: The i and j are positions as given in the UniProt sequence. Only predictions with Prob ≥ 0.7 are listed. For all 3L/2 predictions, click on one of the links below.

Sco = ((raw_sco - min_sco)/(avg_sco - min_sco))/2 + 0.5
Prob = P(contact | Sco, seq80/√len)
seq80 = effective number of sequences, after reducing redundancy to 80% identity

Text file of predictions (all 3L/2 predictions)
Generate restraints for ROSETTA Structure Modeling
Upload PDB model overlay contacts on the model

HHsearch Results:

Legend: GREMLIN results (Prob ≥ 0.7) overlaid on top PDB hits. The grey/red filled circles underneath are pdb residue contacts (min distance < 5 Angstroms). The shade of the circles is based on the top 10 (or top 20 if e-value < 1E-20) HHsearch results which uses the overall probability and per-site alignment prob. Inter oligomeric contacts in the pdb are in shades of red.

PDB	Chains	Cov	%	HHΔ
4tquN	1	0.9476	100	0.265	Contact Map
2onkC	2	0.8951	100	0.27	Contact Map
3rlfG	1	0.9813	100	0.278	Contact Map
3d31C	2	0.8839	100	0.303	Contact Map
4tquM	1	0.9139	100	0.31	Contact Map
3rlfF	1	0.9176	100	0.366	Contact Map
4ymuD	2	0.7978	99.9	0.456	Contact Map
3tuiA	2	0.7753	99.9	0.508	Contact Map
4mrsA	2	0.3521	4.1	0.955	Contact Map
2nwlA	3	0.6142	3.4	0.957	Contact Map

Sequence Conservation (Image Generated using WebLogo v3)

Legend: Color is used to show Hydrophobicity (Blue: Hydrophilic, Green: Neutral and Black: Hydrophobic). Amount of gaps is represented by width.

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