Q97ZC0 - SULSO - GREMLIN Contacts

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Q97ZC0 - Sugar ABC transporter

UniProt:	Q97ZC0	Sequences: MTVELIDIVKKYGKNIVINGITEKIETGEFFVILGPSGEGKSTLLKILAGIEKLDKGKIIADGADITDKPPEKRNVAMVFQNYALYPNMSVRDNIAFPLKMRGMKKEEIIERVEKAAKLLGISEILDKKVTQISGGQQQRVALARAIVRNPSYFLLDEPLSNLDARVRTTARGELKRIQKELKGTFIYVTHDQKEALSLADRIAILHKGKFEQVSDPKTLYEYPKTKWVAQFVGEFPMNFLPGELMKEKAQEIGFRPEWVEVGKGNLSCMVESVEASGESRYLICNFKNNNITILSQEFYDVGQEVRFEIIKYRKYNDGRLVQE	Download Alignment We filter this alignment to remove sites that have many gaps before running GREMLIN. Date: 2015_01
Length:	324 (245)
Sequences:	37085 (24060)
Seq/√Len:	1537.1

ECOLI - CYSA MALK POTG FBPC PROV POTA YCJV YDCT UGPC METN DPPF MODC YHES UUP SAPD DPPD OPPD DDPD YEHX YADG OPPF ARAG RBSA GSIA DDPF MACB MLAF FEPC TAUB YTFR MDLB HISP NIKE FECE SAPF CYDC YECC LSRA MDLA ETTA SSUB MSBA FHUC PHNC LPTB YHDZ ARTP GLNQ YPHE YOJI GLTL CYDD ZNUC LIVG PHNK XYLG THIQ ALSA SUFC MODF PSTB FTSE LIVF MGLA LOLD NIKD BTUD YBBA FETA YEJF YBHF YDDA CCMA PHNL YNJD YBIT YHIH
BACSU - YURJ OPUAA MSMX OPUBA OPUCA YVRA OPPD METN YKFD APPD YDIF DPPD APPF YHCH YXLF YDBJ YFMR YKPA YFIL YHAQ YCBN TAGH YVFR RBSA YFMM OPPF YTRB ECFA1 YUSV YFMF FHUC YLMA YHEH TCYN YFIB YFIC SUNT ECSA YGAD YKNV YTLC YCLP SKFE SUFC ECFA2 BMRA YXDL YHEI BCEA YKNU SSUB YXEO YWJA YVCR TCYC NATA GLNQ CYDD YKOD MNTB PSTB1 CYDC FTSE ARTM YTHP PSTB2 EXPZ YHCG ALBC YJKB YVRO YKNY YYBJ YUFO ZNUC YCLH YYDI YTRE
HALSA - Q9HHQ5 Q9HNZ9 BTUDA Q9HMT3 Q9HMW0 Q9HMX3 Q9HR06 Q9HMX2 Q9HRJ6 Q9HMU8 Q9HMG1 Q9HRH8 PSTB2 PHNC Q9HHM2 Q9HSQ7 Q9HNY3 Q9HMG6 Q9HRZ9 Q9HRV7 Y2317 Y1631 PSTB1 Q9HHR7 Q9HR96 Q9HS04 Q9HT03 Q9HQA8 Q9HR21 Q9HMC1 Q9HMW1
SULSO - Q97ZC0 Q97YY4 Q97UF2 Q97UY8 Q97VC1 Q7LX64 Q97UH3 Q97VF5 Q97YP3 Q97VK8 Q97VH6 Q97YP7 Q97VK9 Q97VF4 Q97UD4 Q97YK2 Q97YP8 Q97X18 Q97YQ7 Q97UJ9 Q980W0 Q97Z03 Q97U54 Y1893 Y2030 Q97UH4 Q97W42 PSTB Q97V01 Q7LY07 Q7LXM4 Q97VY4 Q97V00 Q97VM2 Q7LX80 Q97Z56 Q97UG5 Q97UC2 Q97Z96 Q97YP4 Q980K5 Q97ZU0 Q980E6

GREMLIN Results:

Legend: The darker and larger the blue dots, the higher coevolution strength.

Residue pairs sorted by coevolution strength:

i	j	Sco	Prob
29_E	202_R	3.913	1.00
16_I	19_N	3.229	1.00
7_D	20_G	3.214	1.00
75_N	152_S	3.000	1.00
4_E	24_K	2.991	1.00
6_I	58_K	2.988	1.00
32_V	200_A	2.940	1.00
10_K	47_I	2.859	1.00
31_F	204_A	2.733	1.00
9_V	56_K	2.533	1.00
197_L	218_K	2.435	1.00
5_L	8_I	2.423	1.00
216_D	219_T	2.417	1.00
4_E	60_I	2.368	1.00
215_S	219_T	2.346	1.00
26_E	29_E	2.314	1.00
11_K	16_I	2.210	1.00
204_A	211_F	2.159	1.00
202_R	214_V	2.061	1.00
62_D	152_S	2.057	1.00
9_V	20_G	2.043	1.00
6_I	60_I	2.032	1.00
105_K	108_E	2.019	1.00
19_N	210_K	1.969	1.00
45_L	155_L	1.961	1.00
45_L	189_V	1.896	1.00
125_I	128_K	1.843	1.00
112_R	150_N	1.828	1.00
9_V	16_I	1.822	1.00
8_I	54_L	1.815	1.00
10_K	52_E	1.764	1.00
112_R	115_K	1.755	1.00
10_K	55_D	1.742	1.00
128_K	132_Q	1.712	1.00
27_T	152_S	1.670	1.00
114_E	126_L	1.664	1.00
92_R	127_D	1.650	1.00
176_K	198_S	1.648	1.00
92_R	96_A	1.609	1.00
5_L	23_E	1.593	1.00
7_D	22_T	1.581	1.00
116_A	148_V	1.558	1.00
204_A	214_V	1.552	1.00
12_Y	43_T	1.548	1.00
32_V	196_A	1.543	1.00
219_T	223_Y	1.537	1.00
190_T	196_A	1.534	1.00
90_S	93_D	1.533	1.00
215_S	220_L	1.532	1.00
92_R	126_L	1.514	1.00
23_E	204_A	1.487	1.00
25_I	31_F	1.481	1.00
46_K	51_I	1.480	1.00
119_L	182_L	1.474	1.00
115_K	119_L	1.473	1.00
11_K	55_D	1.452	1.00
9_V	19_N	1.431	1.00
47_I	54_L	1.384	1.00
110_I	114_E	1.377	1.00
202_R	213_Q	1.372	1.00
88_N	131_T	1.362	1.00
12_Y	17_V	1.360	1.00
108_E	111_E	1.352	1.00
117_A	126_L	1.345	1.00
118_K	123_S	1.301	1.00
217_P	221_Y	1.299	1.00
96_A	113_V	1.272	1.00
46_K	52_E	1.268	1.00
89_M	97_F	1.253	1.00
150_N	184_G	1.246	1.00
89_M	94_N	1.238	1.00
77_A	146_A	1.234	1.00
207_H	212_E	1.230	1.00
94_N	145_R	1.215	1.00
107_E	111_E	1.215	1.00
49_A	78_M	1.210	1.00
5_L	48_L	1.210	1.00
172_R	198_S	1.205	1.00
50_G	53_K	1.197	1.00
89_M	93_D	1.196	1.00
21_I	44_L	1.195	1.00
29_E	201_D	1.180	1.00
96_A	109_I	1.179	1.00
156_L	186_F	1.174	1.00
91_V	133_I	1.168	1.00
108_E	112_R	1.160	1.00
111_E	115_K	1.158	1.00
31_F	202_R	1.149	1.00
257_P	260_V	1.146	1.00
92_R	113_V	1.143	1.00
120_L	144_A	1.143	1.00
23_E	44_L	1.141	1.00
6_I	22_T	1.137	1.00
227_K	231_Q	1.128	1.00
31_F	214_V	1.127	1.00
256_R	260_V	1.124	1.00
221_Y	224_P	1.119	1.00
172_R	195_E	1.113	1.00
100_K	109_I	1.099	1.00
30_F	186_F	1.098	1.00
95_I	117_A	1.096	1.00
163_L	171_A	1.092	1.00
33_I	187_I	1.091	1.00
48_L	187_I	1.087	1.00
255_F	258_E	1.078	1.00
219_T	222_E	1.077	1.00
92_R	110_I	1.071	1.00
133_I	141_V	1.067	1.00
256_R	259_W	1.065	1.00
18_I	47_I	1.065	1.00
218_K	222_E	1.060	1.00
79_V	156_L	1.057	1.00
217_P	220_L	1.053	1.00
129_K	132_Q	1.050	1.00
52_E	55_D	1.048	1.00
130_V	141_V	1.047	1.00
114_E	118_K	1.038	1.00
114_E	122_I	1.035	1.00
230_A	234_G	1.022	1.00
26_E	202_R	1.020	1.00
218_K	221_Y	1.018	1.00
93_D	96_A	1.013	1.00
188_Y	200_A	1.011	1.00
229_V	233_V	1.009	1.00
79_V	146_A	1.009	1.00
109_I	113_V	1.006	1.00
39_E	206_L	1.004	1.00
6_I	24_K	0.999	1.00
27_T	62_D	0.996	1.00
96_A	100_K	0.996	1.00
249_K	252_E	0.994	1.00
150_N	182_L	0.993	1.00
49_A	155_L	0.990	1.00
247_K	251_Q	0.983	1.00
118_K	124_E	0.981	1.00
200_A	203_I	0.980	1.00
116_A	119_L	0.977	1.00
175_L	186_F	0.977	1.00
101_M	106_K	0.974	1.00
106_K	109_I	0.971	1.00
18_I	21_I	0.970	1.00
94_N	130_V	0.964	1.00
231_Q	235_E	0.962	1.00
77_A	151_P	0.954	1.00
25_I	185_T	0.952	1.00
253_I	256_R	0.947	1.00
7_D	56_K	0.947	1.00
205_I	220_L	0.935	1.00
92_R	114_E	0.934	1.00
254_G	257_P	0.934	1.00
33_I	44_L	0.930	1.00
121_G	170_T	0.923	1.00
227_K	230_A	0.923	1.00
8_I	47_I	0.922	1.00
87_P	131_T	0.916	1.00
90_S	127_D	0.916	1.00
5_L	59_I	0.914	1.00
252_E	256_R	0.907	1.00
174_E	177_R	0.906	1.00
25_I	153_Y	0.902	1.00
248_E	251_Q	0.902	1.00
90_S	94_N	0.899	1.00
3_V	153_Y	0.897	1.00
205_I	224_P	0.894	1.00
27_T	183_K	0.890	1.00
115_K	118_K	0.883	1.00
62_D	75_N	0.881	1.00
168_R	192_D	0.878	1.00
153_Y	185_T	0.874	1.00
47_I	59_I	0.869	1.00
106_K	110_I	0.859	1.00
95_I	148_V	0.859	1.00
116_A	144_A	0.855	1.00
212_E	226_T	0.849	1.00
90_S	129_K	0.849	1.00
44_L	206_L	0.847	1.00
114_E	124_E	0.847	1.00
42_S	46_K	0.845	1.00
188_Y	199_L	0.840	1.00
51_I	80_F	0.835	1.00
104_M	108_E	0.835	1.00
5_L	44_L	0.835	1.00
248_E	252_E	0.834	1.00
54_L	59_I	0.833	1.00
211_F	214_V	0.833	1.00
91_V	141_V	0.828	1.00
47_I	52_E	0.827	1.00
10_K	43_T	0.825	1.00
203_I	217_P	0.820	1.00
247_K	250_A	0.812	1.00
255_F	260_V	0.812	1.00
253_I	257_P	0.811	1.00
176_K	199_L	0.811	1.00
97_F	101_M	0.810	1.00
221_Y	225_K	0.808	1.00
246_M	249_K	0.808	1.00
105_K	109_I	0.798	1.00
254_G	258_E	0.795	1.00
155_L	187_I	0.794	1.00
28_G	185_T	0.793	1.00
238_M	241_L	0.792	1.00
98_P	101_M	0.792	1.00
11_K	19_N	0.791	1.00
255_F	259_W	0.788	1.00
253_I	259_W	0.783	1.00
86_Y	89_M	0.782	1.00
107_E	110_I	0.780	1.00
101_M	105_K	0.779	1.00
20_G	56_K	0.776	1.00
104_M	109_I	0.775	1.00
173_G	176_K	0.775	1.00
158_E	191_H	0.774	1.00
240_F	243_G	0.771	1.00
98_P	145_R	0.769	1.00
112_R	116_A	0.767	1.00
249_K	253_I	0.766	1.00
85_L	94_N	0.765	1.00
36_P	39_E	0.765	1.00
154_F	184_G	0.761	1.00
154_F	186_F	0.760	1.00
99_L	148_V	0.757	1.00
33_I	204_A	0.757	1.00
11_K	15_N	0.751	1.00
236_F	240_F	0.751	1.00
116_A	120_L	0.739	1.00
31_F	187_I	0.738	1.00
236_F	239_N	0.738	1.00
252_E	255_F	0.737	1.00
220_L	224_P	0.734	1.00
11_K	17_V	0.733	1.00
30_F	199_L	0.732	1.00
160_L	195_E	0.728	1.00
30_F	200_A	0.727	1.00
12_Y	52_E	0.724	1.00
26_E	185_T	0.723	1.00
250_A	254_G	0.721	1.00
34_L	205_I	0.717	1.00
253_I	258_E	0.716	1.00
79_V	143_L	0.714	1.00
169_T	173_G	0.711	1.00
99_L	102_R	0.711	1.00
81_Q	135_G	0.710	1.00
254_G	260_V	0.710	1.00
91_V	94_N	0.704	1.00
119_L	177_R	0.703	1.00
251_Q	255_F	0.701	1.00
194_K	198_S	0.696	1.00
18_I	44_L	0.696	1.00
75_N	149_R	0.694	1.00
110_I	126_L	0.692	1.00
231_Q	234_G	0.691	1.00
223_Y	227_K	0.690	1.00
230_A	233_V	0.689	1.00
10_K	18_I	0.687	1.00
168_R	195_E	0.687	1.00
11_K	14_K	0.683	1.00
252_E	260_V	0.683	1.00
252_E	259_W	0.682	1.00
99_L	103_G	0.680	1.00
96_A	110_I	0.677	1.00
253_I	260_V	0.677	1.00
88_N	129_K	0.676	1.00
250_A	253_I	0.676	1.00
249_K	257_P	0.667	1.00
235_E	238_M	0.666	1.00
88_N	93_D	0.663	1.00
252_E	257_P	0.662	1.00
156_L	175_L	0.660	1.00
47_I	55_D	0.659	1.00
134_S	137_Q	0.657	1.00
102_R	106_K	0.656	1.00
245_L	248_E	0.654	1.00
30_F	188_Y	0.654	1.00
245_L	249_K	0.654	1.00
233_V	236_F	0.653	1.00
173_G	177_R	0.652	1.00
30_F	176_K	0.651	1.00
232_F	235_E	0.649	1.00
7_D	10_K	0.643	1.00
92_R	95_I	0.643	1.00
123_S	126_L	0.640	1.00
79_V	139_Q	0.638	1.00
233_V	237_P	0.638	1.00
21_I	211_F	0.637	1.00
228_W	232_F	0.637	1.00
85_L	138_Q	0.636	1.00
246_M	250_A	0.636	1.00
234_G	237_P	0.634	1.00
48_L	155_L	0.634	1.00
251_Q	254_G	0.630	1.00
97_F	100_K	0.629	1.00
207_H	210_K	0.625	1.00
217_P	228_W	0.624	1.00
11_K	56_K	0.624	1.00
116_A	147_I	0.618	1.00
76_V	153_Y	0.618	1.00
228_W	231_Q	0.618	1.00
242_P	245_L	0.617	1.00
20_G	210_K	0.616	1.00
173_G	198_S	0.616	1.00
85_L	130_V	0.615	1.00
232_F	236_F	0.614	1.00
62_D	74_R	0.614	1.00
96_A	99_L	0.612	1.00
28_G	183_K	0.612	1.00
254_G	259_W	0.610	1.00
152_S	184_G	0.608	1.00
210_K	214_V	0.605	1.00
111_E	114_E	0.596	1.00
243_G	247_K	0.594	1.00
110_I	113_V	0.594	1.00
252_E	258_E	0.591	1.00
242_P	246_M	0.591	1.00
206_L	211_F	0.587	1.00
100_K	106_K	0.585	1.00
217_P	224_P	0.584	1.00
61_A	74_R	0.583	1.00
223_Y	226_T	0.581	1.00
197_L	216_D	0.580	1.00
133_I	137_Q	0.578	1.00
222_E	225_K	0.576	1.00
175_L	199_L	0.575	1.00
243_G	246_M	0.573	1.00
153_Y	187_I	0.570	1.00
216_D	220_L	0.565	1.00
25_I	187_I	0.564	1.00
226_T	229_V	0.563	1.00
229_V	232_F	0.560	1.00
19_N	209_G	0.555	1.00
13_G	16_I	0.555	1.00
8_I	59_I	0.553	1.00
224_P	229_V	0.552	1.00
241_L	244_E	0.550	1.00
43_T	52_E	0.548	1.00
239_N	243_G	0.548	1.00
30_F	201_D	0.547	1.00
195_E	199_L	0.546	1.00
87_P	138_Q	0.543	1.00
80_F	83_Y	0.543	1.00
98_P	102_R	0.540	1.00
45_L	49_A	0.538	1.00
9_V	18_I	0.537	1.00
126_L	129_K	0.536	1.00
60_I	63_G	0.536	1.00
165_A	169_T	0.535	1.00
110_I	127_D	0.535	1.00
102_R	149_R	0.535	1.00
109_I	112_R	0.534	1.00
117_A	122_I	0.532	1.00
192_D	195_E	0.531	1.00
151_P	182_L	0.530	1.00
128_K	133_I	0.526	1.00
3_V	61_A	0.525	1.00
231_Q	240_F	0.522	1.00
234_G	238_M	0.521	1.00
249_K	256_R	0.514	1.00
160_L	171_A	0.512	1.00
16_I	20_G	0.512	1.00
156_L	188_Y	0.510	1.00
239_N	242_P	0.509	1.00
3_V	48_L	0.509	1.00
63_G	73_K	0.509	1.00
182_L	186_F	0.509	1.00
130_V	138_Q	0.508	1.00
196_A	200_A	0.507	1.00
135_G	140_R	0.505	1.00
50_G	61_A	0.503	1.00
248_E	253_I	0.500	1.00

Legend: The i and j are positions as given in the UniProt sequence. Only predictions with Prob ≥ 0.7 are listed. For all 3L/2 predictions, click on one of the links below.

Sco = ((raw_sco - min_sco)/(avg_sco - min_sco))/2 + 0.5
Prob = P(contact | Sco, seq80/√len)
seq80 = effective number of sequences, after reducing redundancy to 80% identity

Text file of predictions (all 3L/2 predictions)
Generate restraints for ROSETTA Structure Modeling
Upload PDB model overlay contacts on the model

HHsearch Results:

Legend: GREMLIN results (Prob ≥ 0.7) overlaid on top PDB hits. The grey/red filled circles underneath are pdb residue contacts (min distance < 5 Angstroms). The shade of the circles is based on the top 10 (or top 20 if e-value < 1E-20) HHsearch results which uses the overall probability and per-site alignment prob. Inter oligomeric contacts in the pdb are in shades of red.

PDB	Chains	Cov	%	HHΔ
2it1A	1	0.8889	100	0.229	Contact Map
3tuiC	2	0.9907	100	0.229	Contact Map
1g291	4	0.8704	100	0.229	Contact Map
1v43A	2	0.9414	100	0.229	Contact Map
2yyzA	1	0.9907	100	0.23	Contact Map
3rlfA	2	0.9969	100	0.234	Contact Map
1oxxK	1	0.9877	100	0.234	Contact Map
4u00A	1	0.7315	100	0.237	Contact Map
4mkiB	2	0.8364	100	0.238	Contact Map
4yerA	2	0.8642	100	0.238	Contact Map

Sequence Conservation (Image Generated using WebLogo v3)

Legend: Color is used to show Hydrophobicity (Blue: Hydrophilic, Green: Neutral and Black: Hydrophobic). Amount of gaps is represented by width.

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