Q97ZB1 - SULSO - GREMLIN Contacts

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Q97ZB1 - Sulfurtransferase

UniProt:	Q97ZB1	Sequences: MFFHIMLVSVEWLNNNLKDVKVVEIGYNPQINYYEGHIPGAVLINWRDFLDDNSRDFASPGKLSKVLGNAGINNDDLIVLYSEMNNRYAFYVYWILKAYGHSNLAILNGGIYKWLKEGYPIESDGIVVNKKSEYKARKPDWSSRILVWELLSKLKEFVLIDSRSKEEYDGLTTAPPEHKCEQTQMSGHIPGAKNIPWTILLNEDETMKSRDELERIFSWLSKEDKIVVYCRTGARASVAWYALKEVLGFKLVRLYDGSWVEYGNMVGVPVEKSVSDRF	Download Alignment We filter this alignment to remove sites that have many gaps before running GREMLIN. Date: 2015_01
Length:	278 (256)
Sequences:	4506 (3212)
Seq/√Len:	200.7

ECOLI - THTM YNJE
HALSA - Q9HMT7 Q9HMT6
SULSO - Q97ZB1 Q97XC6

GREMLIN Results:

Legend: The darker and larger the blue dots, the higher coevolution strength.

Residue pairs sorted by coevolution strength:

i	j	Sco	Prob
77_L	105_A	3.472	1.00
8_V	12_W	3.321	1.00
146_L	149_E	3.081	1.00
16_N	19_D	2.822	1.00
208_K	212_E	2.740	1.00
14_N	119_Y	2.705	1.00
30_Q	34_Y	2.673	1.00
68_G	132_S	2.652	1.00
113_K	117_E	2.582	1.00
165_K	169_D	2.563	1.00
13_L	107_L	2.515	1.00
36_G	115_L	2.435	1.00
166_E	172_T	2.362	1.00
23_V	76_D	2.323	1.00
111_I	121_I	2.317	1.00
106_I	241_Y	2.295	1.00
9_S	108_N	2.293	1.00
12_W	16_N	2.291	1.00
63_L	67_L	2.255	1.00
209_S	212_E	2.245	1.00
36_G	123_S	2.211	1.00
59_S	62_K	2.130	1.00
166_E	171_L	2.117	1.00
165_K	194_N	2.099	1.00
101_H	134_Y	2.073	1.00
10_V	113_K	1.935	1.00
9_S	12_W	1.883	1.00
147_V	268_V	1.876	1.00
240_W	254_L	1.871	1.00
210_R	214_E	1.857	1.00
257_G	261_E	1.806	1.00
90_F	237_S	1.803	1.00
208_K	216_I	1.803	1.00
122_E	126_I	1.799	1.00
147_V	265_M	1.795	1.00
73_N	132_S	1.760	1.00
64_S	68_G	1.749	1.00
10_V	117_E	1.745	1.00
25_I	72_I	1.738	1.00
24_E	38_I	1.696	1.00
13_L	24_E	1.691	1.00
214_E	218_S	1.683	1.00
68_G	133_E	1.673	1.00
64_S	136_A	1.672	1.00
10_V	119_Y	1.661	1.00
33_Y	37_H	1.655	1.00
45_N	48_D	1.632	1.00
236_A	254_L	1.612	1.00
145_I	150_L	1.609	1.00
74_N	135_K	1.596	1.00
145_I	253_R	1.585	1.00
157_F	227_V	1.556	1.00
57_F	95_I	1.555	1.00
153_K	227_V	1.554	1.00
44_I	70_A	1.551	1.00
113_K	206_T	1.515	1.00
202_N	206_T	1.509	1.00
265_M	268_V	1.508	1.00
167_E	235_R	1.495	1.00
73_N	76_D	1.485	1.00
25_I	42_V	1.468	1.00
195_I	216_I	1.450	1.00
147_V	151_L	1.449	1.00
145_I	149_E	1.440	1.00
244_K	250_K	1.440	1.00
77_L	103_N	1.438	1.00
162_S	239_A	1.429	1.00
144_R	256_D	1.423	1.00
145_I	227_V	1.404	1.00
147_V	261_E	1.396	1.00
63_L	99_Y	1.386	1.00
7_L	207_M	1.386	1.00
189_I	192_A	1.385	1.00
221_S	224_D	1.382	1.00
67_L	96_L	1.379	1.00
65_K	69_N	1.362	1.00
23_V	129_N	1.343	1.00
11_E	15_N	1.342	1.00
140_D	143_S	1.335	1.00
158_V	224_D	1.328	1.00
80_L	92_V	1.324	1.00
57_F	98_A	1.304	1.00
200_L	217_F	1.303	1.00
27_Y	80_L	1.302	1.00
153_K	157_F	1.299	1.00
24_E	27_Y	1.291	1.00
240_W	252_V	1.273	1.00
151_L	268_V	1.263	1.00
28_N	32_N	1.254	1.00
102_S	140_D	1.249	1.00
60_P	64_S	1.248	1.00
228_V	243_L	1.221	1.00
34_Y	125_G	1.218	1.00
72_I	78_I	1.204	1.00
97_K	244_K	1.198	1.00
200_L	213_L	1.194	1.00
64_S	135_K	1.187	1.00
73_N	133_E	1.176	1.00
185_M	263_G	1.169	1.00
150_L	227_V	1.168	1.00
225_K	253_R	1.167	1.00
185_M	270_V	1.160	1.00
228_V	252_V	1.140	1.00
226_I	243_L	1.136	1.00
150_L	153_K	1.127	1.00
212_E	215_R	1.117	1.00
210_R	247_L	1.113	1.00
214_E	222_K	1.110	1.00
8_V	16_N	1.104	1.00
150_L	154_L	1.085	1.00
243_L	252_V	1.079	1.00
47_R	55_R	1.068	1.00
189_I	229_Y	1.051	1.00
202_N	208_K	1.042	1.00
115_L	121_I	1.033	1.00
90_F	241_Y	1.032	1.00
31_I	35_E	1.028	1.00
243_L	249_F	1.024	1.00
33_Y	126_I	1.024	1.00
111_I	115_L	1.022	1.00
36_G	121_I	1.018	1.00
242_A	247_L	1.015	1.00
63_L	95_I	1.000	1.00
159_L	229_Y	0.998	1.00
184_Q	263_G	0.998	1.00
31_I	34_Y	0.998	1.00
98_A	139_P	0.996	1.00
259_W	263_G	0.995	1.00
222_K	249_F	0.991	1.00
30_Q	48_D	0.991	1.00
225_K	251_L	0.988	1.00
34_Y	124_D	0.988	1.00
150_L	157_F	0.981	1.00
42_V	129_N	0.976	1.00
62_K	65_K	0.969	0.99
68_G	131_K	0.969	0.99
8_V	105_A	0.964	0.99
87_R	235_R	0.959	0.99
232_T	260_V	0.953	0.99
39_P	114_W	0.951	0.99
30_Q	43_L	0.948	0.99
49_F	66_V	0.946	0.99
93_Y	240_W	0.938	0.99
153_K	159_L	0.936	0.99
65_K	131_K	0.935	0.99
23_V	72_I	0.935	0.99
80_L	96_L	0.927	0.99
207_M	238_V	0.927	0.99
16_N	22_V	0.922	0.99
150_L	159_L	0.921	0.99
36_G	111_I	0.918	0.99
6_M	244_K	0.912	0.99
49_F	69_N	0.911	0.99
62_K	66_V	0.909	0.99
72_I	76_D	0.909	0.99
63_L	96_L	0.906	0.99
28_N	31_I	0.905	0.99
74_N	134_Y	0.904	0.99
199_I	216_I	0.900	0.99
207_M	246_V	0.897	0.99
200_L	239_A	0.897	0.99
241_Y	246_V	0.897	0.99
74_N	137_R	0.894	0.99
42_V	126_I	0.894	0.99
67_L	72_I	0.882	0.99
200_L	216_I	0.880	0.99
208_K	213_L	0.877	0.99
98_A	143_S	0.875	0.99
22_V	79_V	0.874	0.99
80_L	93_Y	0.871	0.99
93_Y	244_K	0.868	0.99
74_N	133_E	0.867	0.99
249_F	252_V	0.867	0.99
7_L	108_N	0.866	0.99
164_S	172_T	0.866	0.99
66_V	69_N	0.859	0.99
8_V	13_L	0.852	0.99
255_Y	261_E	0.851	0.99
145_I	153_K	0.850	0.99
25_I	44_I	0.847	0.99
97_K	240_W	0.843	0.99
13_L	22_V	0.840	0.99
168_Y	188_H	0.838	0.99
16_N	77_L	0.837	0.98
200_L	238_V	0.831	0.98
145_I	157_F	0.830	0.98
23_V	26_G	0.829	0.98
149_E	153_K	0.829	0.98
158_V	193_K	0.826	0.98
167_E	174_A	0.825	0.98
185_M	268_V	0.822	0.98
158_V	221_S	0.820	0.98
122_E	125_G	0.819	0.98
64_S	132_S	0.819	0.98
38_I	114_W	0.818	0.98
195_I	200_L	0.817	0.98
167_E	232_T	0.816	0.98
21_K	24_E	0.814	0.98
153_K	225_K	0.808	0.98
82_S	89_A	0.808	0.98
165_K	199_I	0.801	0.98
112_Y	116_K	0.797	0.98
14_N	120_P	0.795	0.98
55_R	232_T	0.794	0.98
195_I	217_F	0.786	0.98
22_V	77_L	0.783	0.98
25_I	92_V	0.783	0.98
46_W	234_A	0.780	0.98
167_E	231_R	0.773	0.97
215_R	218_S	0.773	0.97
42_V	70_A	0.765	0.97
230_C	258_S	0.764	0.97
28_N	43_L	0.762	0.97
20_V	24_E	0.756	0.97
67_L	134_Y	0.751	0.97
213_L	217_F	0.751	0.97
217_F	243_L	0.751	0.97
207_M	242_A	0.750	0.97
74_N	101_H	0.750	0.97
154_L	191_G	0.750	0.97
25_I	70_A	0.749	0.97
7_L	241_Y	0.745	0.97
228_V	240_W	0.745	0.97
58_A	91_Y	0.745	0.97
86_N	207_M	0.742	0.97
192_A	229_Y	0.739	0.97
164_S	198_T	0.738	0.97
69_N	131_K	0.737	0.97
11_E	119_Y	0.737	0.97
30_Q	45_N	0.737	0.97
166_E	169_D	0.733	0.97
93_Y	97_K	0.731	0.96
189_I	271_E	0.730	0.96
21_K	77_L	0.727	0.96
164_S	167_E	0.727	0.96
23_V	42_V	0.726	0.96
20_V	26_G	0.726	0.96
211_D	214_E	0.725	0.96
21_K	76_D	0.720	0.96
21_K	75_D	0.716	0.96
226_I	249_F	0.714	0.96
149_E	152_S	0.712	0.96
37_H	81_Y	0.712	0.96
22_V	76_D	0.710	0.96
44_I	92_V	0.709	0.96
72_I	96_L	0.709	0.96
261_E	264_N	0.707	0.96
217_F	239_A	0.706	0.96
188_H	192_A	0.703	0.96
23_V	27_Y	0.702	0.96
158_V	226_I	0.695	0.95
147_V	154_L	0.694	0.95
213_L	216_I	0.693	0.95
170_G	187_G	0.693	0.95
263_G	270_V	0.691	0.95
196_P	199_I	0.691	0.95
86_N	238_V	0.690	0.95
55_R	234_A	0.690	0.95
55_R	167_E	0.687	0.95
259_W	270_V	0.686	0.95
168_Y	192_A	0.685	0.95
172_T	175_P	0.684	0.95
84_M	112_Y	0.684	0.95
32_N	35_E	0.683	0.95
259_W	269_P	0.676	0.95
85_N	201_L	0.675	0.95
74_N	102_S	0.672	0.94
143_S	253_R	0.669	0.94
57_F	144_R	0.668	0.94
107_L	114_W	0.668	0.94
213_L	242_A	0.666	0.94
33_Y	41_A	0.664	0.94
85_N	112_Y	0.664	0.94
44_I	66_V	0.661	0.94
14_N	18_K	0.660	0.94
197_W	201_L	0.655	0.94
244_K	252_V	0.653	0.93
51_D	54_S	0.652	0.93
80_L	104_L	0.651	0.93
255_Y	258_S	0.649	0.93
112_Y	115_L	0.649	0.93
260_V	263_G	0.648	0.93
142_S	253_R	0.646	0.93
83_E	112_Y	0.643	0.93
113_K	116_K	0.638	0.93
78_I	96_L	0.637	0.93
212_E	216_I	0.631	0.92
60_P	136_A	0.625	0.92
97_K	102_S	0.623	0.92
13_L	79_V	0.623	0.92
93_Y	104_L	0.622	0.92
163_R	192_A	0.621	0.92
237_S	254_L	0.620	0.92
239_A	242_A	0.619	0.92
86_N	106_I	0.619	0.92
33_Y	124_D	0.618	0.92
50_L	95_I	0.615	0.91
151_L	154_L	0.610	0.91
82_S	91_Y	0.609	0.91
55_R	174_A	0.608	0.91
164_S	235_R	0.608	0.91
231_R	235_R	0.607	0.91
66_V	70_A	0.605	0.91
183_T	263_G	0.603	0.90
6_M	241_Y	0.601	0.90
202_N	212_E	0.598	0.90
48_D	69_N	0.597	0.90
68_G	73_N	0.596	0.90
160_I	226_I	0.593	0.90
21_K	26_G	0.590	0.90
86_N	201_L	0.590	0.90
113_K	119_Y	0.588	0.89
78_I	101_H	0.586	0.89
148_W	151_L	0.585	0.89
237_S	240_W	0.585	0.89
158_V	220_L	0.585	0.89
244_K	251_L	0.584	0.89
18_K	21_K	0.583	0.89
10_V	14_N	0.582	0.89
220_L	249_F	0.581	0.89
176_P	184_Q	0.578	0.89
86_N	89_A	0.578	0.89
13_L	114_W	0.577	0.88
37_H	122_E	0.574	0.88
200_L	242_A	0.573	0.88
33_Y	42_V	0.569	0.88
38_I	107_L	0.565	0.87
44_I	49_F	0.564	0.87
80_L	106_I	0.564	0.87
160_I	195_I	0.563	0.87
176_P	183_T	0.563	0.87
35_E	123_S	0.563	0.87
11_E	117_E	0.563	0.87
149_E	253_R	0.561	0.87
67_L	99_Y	0.560	0.87
149_E	225_K	0.558	0.87
228_V	239_A	0.554	0.86
32_N	83_E	0.554	0.86
49_F	52_D	0.553	0.86
74_N	132_S	0.545	0.86
188_H	229_Y	0.545	0.86
49_F	70_A	0.544	0.85
29_P	32_N	0.542	0.85
58_A	95_I	0.540	0.85
148_W	152_S	0.538	0.85
154_L	159_L	0.538	0.85
214_E	250_K	0.538	0.85
29_P	43_L	0.537	0.85
75_D	132_S	0.535	0.84
81_Y	111_I	0.535	0.84
6_M	246_V	0.535	0.84
77_L	80_L	0.533	0.84
128_V	131_K	0.532	0.84
93_Y	241_Y	0.532	0.84
50_L	55_R	0.531	0.84
6_M	105_A	0.529	0.84
87_R	90_F	0.527	0.84
160_I	220_L	0.526	0.83
52_D	62_K	0.526	0.83
201_L	238_V	0.524	0.83
56_D	256_D	0.523	0.83
126_I	129_N	0.522	0.83
67_L	70_A	0.521	0.83
151_L	262_Y	0.521	0.83
65_K	68_G	0.519	0.83
98_A	144_R	0.519	0.83
114_W	119_Y	0.519	0.83
160_I	193_K	0.519	0.83
41_A	81_Y	0.513	0.82
55_R	231_R	0.513	0.82
163_R	259_W	0.512	0.82
99_Y	134_Y	0.511	0.82
99_Y	136_A	0.511	0.82
202_N	205_E	0.508	0.81
68_G	134_Y	0.507	0.81
162_S	194_N	0.506	0.81
155_K	225_K	0.505	0.81
147_V	255_Y	0.503	0.81
37_H	41_A	0.503	0.81
161_D	192_A	0.502	0.81
197_W	235_R	0.502	0.81
217_F	242_A	0.502	0.81
218_S	221_S	0.500	0.80
10_V	107_L	0.500	0.80

Legend: The i and j are positions as given in the UniProt sequence. Only predictions with Prob ≥ 0.7 are listed. For all 3L/2 predictions, click on one of the links below.

Sco = ((raw_sco - min_sco)/(avg_sco - min_sco))/2 + 0.5
Prob = P(contact | Sco, seq80/√len)
seq80 = effective number of sequences, after reducing redundancy to 80% identity

Text file of predictions (all 3L/2 predictions)
Generate restraints for ROSETTA Structure Modeling
Upload PDB model overlay contacts on the model

HHsearch Results:

Legend: GREMLIN results (Prob ≥ 0.7) overlaid on top PDB hits. The grey/red filled circles underneath are pdb residue contacts (min distance < 5 Angstroms). The shade of the circles is based on the top 10 (or top 20 if e-value < 1E-20) HHsearch results which uses the overall probability and per-site alignment prob. Inter oligomeric contacts in the pdb are in shades of red.

PDB	Chains	Cov	%	HHΔ
3aayA	1	0.982	100	0.266	Contact Map
1uarA	1	0.9568	100	0.271	Contact Map
3hzuA	2	0.9964	100	0.273	Contact Map
1urhA	1	0.8813	100	0.274	Contact Map
1rhsA	1	0.964	100	0.284	Contact Map
1e0cA	1	0.9388	100	0.296	Contact Map
3utnX	1	0.9568	100	0.3	Contact Map
4jgtA	1	0.9317	100	0.306	Contact Map
2wlrA	1	0.9676	100	0.306	Contact Map
1okgA	1	0.9388	100	0.31	Contact Map

Sequence Conservation (Image Generated using WebLogo v3)

Legend: Color is used to show Hydrophobicity (Blue: Hydrophilic, Green: Neutral and Black: Hydrophobic). Amount of gaps is represented by width.

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