Q97ZA2 - SULSO - GREMLIN Contacts

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Q97ZA2 - Uncharacterized protein

UniProt:	Q97ZA2	Sequences: MYKYFDAHCHYSYLKKKYEGYLIAAVSMDYQSAMDTFSLKSDNVLVGVGIHPWRVHEEDLTRILSLIIKADFVGEVGLDYRFAKAPKELQIKYFEEQIKAGEGKLINVHALDAWKDAFNILVKNDVKSAIFHWYTGPINLLKDIESAGYFISINPSVSFQKKHQEVLKNVDLKNVLTESDGGYEYRGKLLEPSDIPNAISFMSNFLGIEEYKLVRIISNNFFKAYGVNPVNN	Download Alignment We filter this alignment to remove sites that have many gaps before running GREMLIN. Date: 2015_01
Length:	232 (223)
Sequences:	7192 (5149)
Seq/√Len:	344.8

ECOLI - YJJV YCFH TATD
BACSU - YABD
SULSO - Q97ZA2 Q981A2

GREMLIN Results:

Legend: The darker and larger the blue dots, the higher coevolution strength.

Residue pairs sorted by coevolution strength:

i	j	Sco	Prob
64_L	102_E	3.326	1.00
95_E	123_K	3.003	1.00
138_I	169_N	2.830	1.00
201_F	204_N	2.765	1.00
80_Y	116_D	2.456	1.00
98_I	106_I	2.334	1.00
129_A	149_Y	2.310	1.00
200_S	210_E	2.208	1.00
219_N	223_K	2.190	1.00
122_V	143_D	2.132	1.00
164_Q	201_F	2.124	1.00
91_I	116_D	2.017	1.00
110_A	117_A	1.990	1.00
47_G	72_F	1.905	1.00
95_E	124_N	1.889	1.00
172_L	206_L	1.875	1.00
99_K	124_N	1.873	1.00
80_Y	87_K	1.826	1.00
67_I	73_V	1.819	1.00
208_I	213_L	1.808	1.00
172_L	216_I	1.798	1.00
39_L	69_K	1.783	1.00
115_K	119_N	1.771	1.00
172_L	208_I	1.771	1.00
138_I	142_K	1.766	1.00
13_Y	17_K	1.741	1.00
215_R	219_N	1.740	1.00
47_G	107_N	1.734	1.00
167_L	202_M	1.701	1.00
131_F	144_I	1.697	1.00
14_L	17_K	1.694	1.00
122_V	147_A	1.675	1.00
199_I	210_E	1.661	1.00
92_K	96_E	1.627	1.00
7_A	221_F	1.627	1.00
133_W	154_N	1.627	1.00
38_S	46_V	1.620	1.00
76_V	97_Q	1.595	1.00
143_D	146_S	1.580	1.00
161_K	165_E	1.565	1.00
142_K	146_S	1.564	1.00
76_V	106_I	1.560	1.00
110_A	114_W	1.551	1.00
177_T	199_I	1.549	1.00
60_L	96_E	1.543	1.00
96_E	99_K	1.531	1.00
142_K	169_N	1.495	1.00
141_L	151_I	1.488	1.00
157_V	202_M	1.481	1.00
130_I	224_A	1.480	1.00
36_T	40_K	1.475	1.00
150_F	174_N	1.474	1.00
91_I	119_N	1.466	1.00
137_P	140_L	1.454	1.00
153_I	167_L	1.449	1.00
94_F	108_V	1.419	1.00
165_E	168_K	1.419	1.00
27_S	30_Y	1.413	1.00
150_F	223_K	1.400	1.00
196_P	200_S	1.394	1.00
200_S	204_N	1.372	1.00
14_L	18_Y	1.362	1.00
218_S	222_F	1.358	1.00
118_F	143_D	1.350	1.00
103_G	128_S	1.347	1.00
161_K	164_Q	1.335	1.00
95_E	120_I	1.320	1.00
164_Q	205_F	1.319	1.00
91_I	95_E	1.308	1.00
4_Y	199_I	1.298	1.00
119_N	123_K	1.295	1.00
15_K	18_Y	1.291	1.00
86_P	89_L	1.277	1.00
36_T	39_L	1.271	1.00
62_R	65_S	1.262	1.00
171_D	174_N	1.260	1.00
5_F	218_S	1.257	1.00
151_I	170_V	1.255	1.00
9_C	181_G	1.243	1.00
197_N	200_S	1.239	1.00
212_K	215_R	1.237	1.00
185_Y	194_D	1.237	1.00
94_F	117_A	1.235	1.00
209_E	212_K	1.233	1.00
53_W	82_F	1.231	1.00
4_Y	214_V	1.225	1.00
28_M	31_Q	1.214	1.00
208_I	212_K	1.210	1.00
80_Y	91_I	1.183	1.00
199_I	217_I	1.171	1.00
91_I	120_I	1.171	1.00
176_L	224_A	1.170	1.00
185_Y	197_N	1.165	1.00
35_D	39_L	1.161	1.00
218_S	221_F	1.156	1.00
145_E	174_N	1.152	1.00
202_M	213_L	1.150	1.00
153_I	175_V	1.147	1.00
30_Y	34_M	1.142	1.00
87_K	91_I	1.141	1.00
190_L	194_D	1.137	1.00
25_A	31_Q	1.135	1.00
139_N	142_K	1.129	1.00
34_M	46_V	1.128	1.00
201_F	205_F	1.125	1.00
88_E	92_K	1.110	1.00
34_M	38_S	1.109	1.00
4_Y	195_I	1.104	1.00
5_F	221_F	1.092	1.00
217_I	221_F	1.089	1.00
59_D	62_R	1.083	1.00
165_E	169_N	1.083	1.00
55_V	93_Y	1.078	1.00
115_K	140_L	1.070	1.00
114_W	140_L	1.068	1.00
177_T	202_M	1.066	1.00
65_S	69_K	1.064	1.00
20_G	45_L	1.061	1.00
14_L	43_N	1.058	1.00
150_F	224_A	1.056	1.00
99_K	102_E	1.056	1.00
136_G	140_L	1.054	1.00
185_Y	188_K	1.051	1.00
53_W	85_A	1.044	1.00
138_I	166_V	1.039	1.00
65_S	68_I	1.038	1.00
13_Y	18_Y	1.036	1.00
32_S	36_T	1.030	1.00
13_Y	21_Y	1.027	1.00
89_L	92_K	1.025	1.00
64_L	68_I	1.025	1.00
103_G	127_K	1.019	1.00
83_A	87_K	1.017	1.00
115_K	143_D	1.010	1.00
32_S	62_R	1.006	1.00
191_E	194_D	1.002	1.00
177_T	195_I	0.989	1.00
12_S	30_Y	0.981	1.00
54_R	57_E	0.977	1.00
88_E	91_I	0.973	1.00
216_I	219_N	0.972	1.00
199_I	214_V	0.968	1.00
153_I	170_V	0.966	1.00
167_L	206_L	0.965	1.00
33_A	36_T	0.948	1.00
152_S	176_L	0.947	1.00
81_R	112_D	0.941	1.00
214_V	218_S	0.937	1.00
23_I	34_M	0.936	1.00
61_T	64_L	0.932	1.00
11_Y	192_P	0.929	1.00
61_T	65_S	0.923	1.00
118_F	144_I	0.922	1.00
64_L	100_A	0.919	1.00
157_V	167_L	0.916	1.00
55_V	89_L	0.910	1.00
62_R	66_L	0.908	1.00
177_T	217_I	0.904	1.00
212_K	216_I	0.904	1.00
9_C	21_Y	0.903	1.00
18_Y	21_Y	0.898	1.00
35_D	46_V	0.894	1.00
20_G	222_F	0.892	1.00
184_E	187_G	0.889	1.00
199_I	213_L	0.888	1.00
87_K	116_D	0.882	1.00
213_L	217_I	0.867	1.00
7_A	176_L	0.862	1.00
206_L	213_L	0.859	1.00
14_L	19_E	0.858	1.00
172_L	213_L	0.856	1.00
60_L	64_L	0.854	1.00
26_V	30_Y	0.849	1.00
138_I	165_E	0.847	1.00
196_P	210_E	0.837	1.00
129_A	224_A	0.836	1.00
167_L	205_F	0.835	1.00
145_E	171_D	0.832	1.00
210_E	214_V	0.830	1.00
17_K	21_Y	0.830	1.00
156_S	159_F	0.829	1.00
25_A	28_M	0.827	1.00
28_M	59_D	0.822	1.00
145_E	151_I	0.822	1.00
108_V	131_F	0.816	1.00
4_Y	218_S	0.808	1.00
108_V	117_A	0.806	1.00
35_D	69_K	0.805	1.00
130_I	225_Y	0.796	1.00
7_A	130_I	0.787	1.00
5_F	20_G	0.787	1.00
114_W	144_I	0.783	1.00
211_Y	215_R	0.783	1.00
38_S	44_V	0.783	1.00
53_W	84_K	0.778	1.00
199_I	203_S	0.772	1.00
35_D	48_V	0.771	1.00
114_W	136_G	0.771	1.00
73_V	76_V	0.770	1.00
168_K	205_F	0.769	1.00
31_Q	34_M	0.768	1.00
171_D	206_L	0.766	1.00
118_F	140_L	0.765	1.00
116_D	119_N	0.763	1.00
103_G	126_V	0.761	1.00
30_Y	33_A	0.754	1.00
175_V	206_L	0.753	1.00
128_S	226_G	0.752	1.00
17_K	20_G	0.748	1.00
89_L	93_Y	0.748	1.00
17_K	189_L	0.737	0.99
29_D	32_S	0.733	0.99
110_A	136_G	0.731	0.99
24_A	47_G	0.730	0.99
195_I	198_A	0.729	0.99
130_I	152_S	0.726	0.99
95_E	99_K	0.724	0.99
32_S	66_L	0.718	0.99
202_M	206_L	0.715	0.99
120_I	123_K	0.715	0.99
168_K	207_G	0.713	0.99
150_F	176_L	0.713	0.99
4_Y	196_P	0.708	0.99
83_A	86_P	0.708	0.99
14_L	21_Y	0.701	0.99
219_N	222_F	0.695	0.99
98_I	124_N	0.692	0.99
159_F	184_E	0.685	0.99
163_H	166_V	0.683	0.99
141_L	166_V	0.683	0.99
120_I	124_N	0.681	0.99
208_I	216_I	0.679	0.99
110_A	144_I	0.678	0.99
27_S	31_Q	0.672	0.99
84_K	87_K	0.671	0.99
35_D	38_S	0.667	0.99
122_V	146_S	0.666	0.99
78_L	113_A	0.663	0.99
175_V	213_L	0.662	0.99
24_A	107_N	0.660	0.99
25_A	34_M	0.660	0.99
7_A	107_N	0.659	0.99
76_V	93_Y	0.657	0.99
144_I	151_I	0.656	0.99
141_L	145_E	0.654	0.99
161_K	168_K	0.652	0.99
48_V	66_L	0.650	0.99
107_N	225_Y	0.646	0.99
28_M	62_R	0.643	0.99
156_S	163_H	0.638	0.99
4_Y	177_T	0.637	0.99
72_F	107_N	0.637	0.99
145_E	169_N	0.635	0.98
4_Y	210_E	0.631	0.98
170_V	175_V	0.631	0.98
203_S	210_E	0.625	0.98
14_L	20_G	0.624	0.98
176_L	221_F	0.620	0.98
114_W	118_F	0.620	0.98
173_K	223_K	0.617	0.98
23_I	44_V	0.616	0.98
143_D	147_A	0.606	0.98
130_I	176_L	0.606	0.98
118_F	122_V	0.604	0.98
150_F	220_N	0.603	0.98
55_V	85_A	0.603	0.98
56_H	86_P	0.602	0.98
145_E	170_V	0.602	0.98
60_L	100_A	0.596	0.98
25_A	30_Y	0.596	0.98
98_I	120_I	0.596	0.98
164_Q	168_K	0.595	0.98
81_R	111_L	0.590	0.98
56_H	89_L	0.588	0.98
216_I	223_K	0.587	0.98
25_A	36_T	0.587	0.98
27_S	33_A	0.586	0.97
141_L	170_V	0.583	0.97
162_K	165_E	0.583	0.97
173_K	216_I	0.582	0.97
103_G	226_G	0.581	0.97
175_V	217_I	0.581	0.97
5_F	22_L	0.580	0.97
118_F	147_A	0.576	0.97
134_Y	140_L	0.576	0.97
12_S	33_A	0.575	0.97
131_F	152_S	0.574	0.97
31_Q	35_D	0.574	0.97
206_L	216_I	0.571	0.97
181_G	190_L	0.569	0.97
134_Y	144_I	0.569	0.97
27_S	57_E	0.567	0.97
157_V	213_L	0.563	0.97
93_Y	97_Q	0.561	0.97
216_I	220_N	0.560	0.97
56_H	85_A	0.557	0.97
18_Y	22_L	0.554	0.96
125_D	149_Y	0.553	0.96
53_W	83_A	0.544	0.96
110_A	113_A	0.541	0.96
59_D	93_Y	0.540	0.96
157_V	163_H	0.538	0.96
194_D	197_N	0.537	0.96
58_E	62_R	0.535	0.96
108_V	129_A	0.534	0.96
155_P	158_S	0.533	0.96
163_H	167_L	0.530	0.95
211_Y	214_V	0.530	0.95
68_I	102_E	0.529	0.95
124_N	127_K	0.528	0.95
22_L	221_F	0.526	0.95
63_I	67_I	0.526	0.95
148_G	151_I	0.525	0.95
96_E	100_A	0.521	0.95
140_L	144_I	0.521	0.95
153_I	156_S	0.521	0.95
5_F	222_F	0.521	0.95
58_E	61_T	0.520	0.95
24_A	34_M	0.520	0.95
114_W	117_A	0.518	0.95
28_M	32_S	0.516	0.95
49_G	97_Q	0.516	0.95
97_Q	101_G	0.516	0.95
157_V	164_Q	0.512	0.95
23_I	28_M	0.511	0.95
134_Y	141_L	0.511	0.95
31_Q	38_S	0.507	0.94
16_K	19_E	0.506	0.94
7_A	10_H	0.505	0.94
29_D	57_E	0.505	0.94
78_L	91_I	0.504	0.94
131_F	149_Y	0.503	0.94
38_S	41_S	0.501	0.94
158_S	201_F	0.500	0.94

Legend: The i and j are positions as given in the UniProt sequence. Only predictions with Prob ≥ 0.7 are listed. For all 3L/2 predictions, click on one of the links below.

Sco = ((raw_sco - min_sco)/(avg_sco - min_sco))/2 + 0.5
Prob = P(contact | Sco, seq80/√len)
seq80 = effective number of sequences, after reducing redundancy to 80% identity

Text file of predictions (all 3L/2 predictions)
Generate restraints for ROSETTA Structure Modeling
Upload PDB model overlay contacts on the model

HHsearch Results:

Legend: GREMLIN results (Prob ≥ 0.7) overlaid on top PDB hits. The grey/red filled circles underneath are pdb residue contacts (min distance < 5 Angstroms). The shade of the circles is based on the top 10 (or top 20 if e-value < 1E-20) HHsearch results which uses the overall probability and per-site alignment prob. Inter oligomeric contacts in the pdb are in shades of red.

PDB	Chains	Cov	%	HHΔ
3e2vA	1	0.9741	100	0.237	Contact Map
3ipwA	1	0.9828	100	0.298	Contact Map
2xioA	1	0.9784	100	0.352	Contact Map
3gg7A	1	0.9655	100	0.36	Contact Map
1j6oA	1	0.9914	100	0.405	Contact Map
3rcmA	1	0.9914	100	0.429	Contact Map
2y1hA	2	1	100	0.433	Contact Map
1xwyA	1	0.9698	100	0.442	Contact Map
1zzmA	1	0.9828	100	0.446	Contact Map
2gzxA	1	0.9612	100	0.453	Contact Map

Sequence Conservation (Image Generated using WebLogo v3)

Legend: Color is used to show Hydrophobicity (Blue: Hydrophilic, Green: Neutral and Black: Hydrophobic). Amount of gaps is represented by width.

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