Q97Z98 - SULSO - GREMLIN Contacts

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Q97Z98 - Sulfate ABC transporter, permease protein

UniProt:	Q97Z98	Sequences: MRVISLKFNTLQAISFFLSLLLALPTLYLLFYGYGPFFVKSVAFSSSLLSSIGLSFFASALSIVITVLIFTPLAYYLSRHRNPIIETLVDVPASIPHPLVGIALIFIDSPTNPLGALLYSHGIIFYYTYTGLLLALIIVSSPIYIRSMQNFFESLPRSYEIYAMSLGASEFKVFTSVVFPLSIRGIISAGLTSIARAISEFGSVVIVAPYVTGWLFNNAYVASVYIYNEYETYFSASISASATLLLFSLILIVTSRIVNHFLYKT	Download Alignment We filter this alignment to remove sites that have many gaps before running GREMLIN. Date: 2015_01
Length:	265 (233)
Sequences:	71051 (45079)
Seq/√Len:	2953.2

ECOLI - THIP POTH CYST YNJC UGPA CYSW PSTC POTB YCJO PSTA POTI YDCU MALG UGPE MODB YDCV YCJP MALF POTC YEHY YEHW SSUC TAUC METI PHNE PROW YECS GLNP
BACSU - GANP YURN AMYD YTEP ARAP LPLB MDXF YESP YQGI MDXG YQGH GANQ YVGM YTCP YESQ AMYC ARAQ YURM LPLC OPUAB METP TCYB SSUC YTLD YXEN TCYL OPUCB OPUBD OPUCD OPUBB ARTQ
HALSA - Q9HMT4 Q9HR05 Q9HPK3 Q9HP01 Q9HML6 Q9HHQ7 Q9HS11 Q9HP02 Q9HHQ6 Q9HNI9 Q9HS12
SULSO - Q97Z98 Q97UZ0 Q97VC0 Q97YY2 Q97ZC2 Q97UF3 Q97UF4 Q97YY3 Q97ZT7 Q97ZT6 Q97UY9 Q97ZC1

GREMLIN Results:

Legend: The darker and larger the blue dots, the higher coevolution strength.

Residue pairs sorted by coevolution strength:

i	j	Sco	Prob
172_K	176_S	3.843	1.00
53_G	57_F	3.139	1.00
164_M	173_V	2.880	1.00
149_Q	153_E	2.860	1.00
151_F	185_G	2.517	1.00
33_G	39_V	2.506	1.00
79_R	160_E	2.495	1.00
50_S	53_G	2.490	1.00
160_E	178_V	2.470	1.00
163_A	173_V	2.467	1.00
61_L	133_L	2.444	1.00
169_S	172_K	2.427	1.00
51_S	225_Y	2.385	1.00
37_F	40_K	2.357	1.00
65_I	137_I	2.353	1.00
40_K	44_F	2.293	1.00
220_Y	228_N	2.293	1.00
37_F	41_S	2.273	1.00
63_I	190_G	2.269	1.00
49_L	53_G	2.228	1.00
170_E	173_V	2.226	1.00
171_F	175_T	2.152	1.00
148_M	186_I	2.127	1.00
168_A	172_K	2.034	1.00
172_K	175_T	1.956	1.00
71_T	174_F	1.913	1.00
125_F	128_T	1.872	1.00
78_S	153_E	1.871	1.00
144_Y	189_A	1.867	1.00
152_F	182_S	1.827	1.00
27_L	31_F	1.819	1.00
159_Y	181_L	1.805	1.00
163_A	168_A	1.778	1.00
253_V	257_I	1.766	1.00
86_E	149_Q	1.752	1.00
71_T	182_S	1.729	1.00
67_V	190_G	1.725	1.00
164_M	170_E	1.717	1.00
160_E	173_V	1.688	1.00
59_S	194_I	1.671	1.00
50_S	54_L	1.638	1.00
217_N	220_Y	1.610	1.00
160_E	164_M	1.588	1.00
62_S	197_A	1.579	1.00
70_F	144_Y	1.570	1.00
57_F	129_Y	1.567	1.00
57_F	61_L	1.560	1.00
225_Y	229_E	1.549	1.00
77_L	145_I	1.548	1.00
41_S	236_A	1.536	1.00
71_T	148_M	1.527	1.00
73_L	145_I	1.514	1.00
144_Y	193_S	1.504	1.00
157_R	160_E	1.461	1.00
68_L	72_P	1.446	1.00
35_G	38_F	1.438	1.00
24_L	28_Y	1.436	1.00
41_S	44_F	1.417	1.00
28_Y	32_Y	1.404	1.00
12_Q	16_F	1.385	1.00
125_F	130_T	1.383	1.00
36_P	40_K	1.350	1.00
74_A	148_M	1.349	1.00
179_F	186_I	1.348	1.00
30_L	242_A	1.333	1.00
47_S	50_S	1.324	1.00
129_Y	219_A	1.311	1.00
188_S	192_T	1.308	1.00
78_S	149_Q	1.294	1.00
152_F	178_V	1.289	1.00
126_Y	129_Y	1.286	1.00
210_Y	218_N	1.283	1.00
148_M	189_A	1.283	1.00
79_R	157_R	1.272	1.00
126_Y	130_T	1.266	1.00
66_T	193_S	1.263	1.00
58_A	221_V	1.259	1.00
158_S	161_I	1.253	1.00
201_F	205_V	1.247	1.00
157_R	161_I	1.233	1.00
247_F	250_I	1.214	1.00
55_S	222_A	1.199	1.00
220_Y	225_Y	1.199	1.00
71_T	186_I	1.197	1.00
163_A	177_V	1.193	1.00
127_Y	130_T	1.184	1.00
109_S	122_G	1.183	1.00
201_F	227_Y	1.180	1.00
208_A	219_A	1.177	1.00
203_S	207_V	1.176	1.00
135_A	207_V	1.170	1.00
61_L	64_V	1.162	1.00
229_E	233_Y	1.155	1.00
221_V	224_V	1.151	1.00
54_L	57_F	1.150	1.00
64_V	68_L	1.149	1.00
75_Y	152_F	1.146	1.00
108_D	131_G	1.141	1.00
84_I	87_T	1.129	1.00
125_F	129_Y	1.120	1.00
169_S	173_V	1.114	1.00
124_I	127_Y	1.112	1.00
183_I	187_I	1.112	1.00
16_F	20_L	1.100	1.00
141_S	145_I	1.100	1.00
155_L	181_L	1.099	1.00
41_S	45_S	1.085	1.00
65_I	133_L	1.085	1.00
39_V	242_A	1.069	1.00
28_Y	31_F	1.063	1.00
67_V	186_I	1.062	1.00
204_V	221_V	1.061	1.00
132_L	204_V	1.054	1.00
225_Y	240_A	1.052	1.00
84_I	88_L	1.050	1.00
78_S	152_F	1.037	1.00
61_L	65_I	1.035	1.00
228_N	232_T	1.030	1.00
29_L	242_A	1.017	1.00
133_L	137_I	1.007	1.00
181_L	184_R	0.998	1.00
43_A	49_L	0.990	1.00
148_M	185_G	0.988	1.00
227_Y	231_E	0.986	1.00
72_P	76_Y	0.986	1.00
147_S	189_A	0.976	1.00
52_I	222_A	0.970	1.00
220_Y	224_V	0.969	1.00
56_F	60_A	0.966	1.00
62_S	66_T	0.965	1.00
168_A	173_V	0.963	1.00
62_S	136_L	0.960	1.00
254_T	258_V	0.959	1.00
75_Y	174_F	0.956	1.00
38_F	235_S	0.954	1.00
160_E	170_E	0.948	1.00
173_V	176_S	0.948	1.00
200_E	203_S	0.942	1.00
47_S	217_N	0.933	1.00
9_N	13_A	0.927	1.00
74_A	78_S	0.922	1.00
200_E	204_V	0.918	1.00
75_Y	170_E	0.917	1.00
210_Y	219_A	0.916	1.00
168_A	176_S	0.910	1.00
32_Y	238_I	0.902	1.00
136_L	197_A	0.901	1.00
62_S	133_L	0.896	1.00
60_A	64_V	0.894	1.00
76_Y	82_N	0.889	1.00
229_E	236_A	0.888	1.00
9_N	12_Q	0.886	1.00
64_V	190_G	0.883	1.00
104_L	207_V	0.882	1.00
225_Y	228_N	0.879	1.00
52_I	56_F	0.877	1.00
57_F	60_A	0.873	1.00
90_D	146_R	0.872	1.00
183_I	186_I	0.869	1.00
230_Y	237_S	0.868	1.00
148_M	182_S	0.861	1.00
8_F	12_Q	0.860	1.00
104_L	135_A	0.860	1.00
254_T	257_I	0.860	1.00
19_S	23_A	0.856	1.00
151_F	182_S	0.852	1.00
182_S	185_G	0.848	1.00
205_V	224_V	0.845	1.00
135_A	203_S	0.844	1.00
105_I	109_S	0.837	1.00
70_F	145_I	0.834	1.00
48_L	240_A	0.833	1.00
173_V	178_V	0.831	1.00
11_L	15_S	0.830	1.00
144_Y	148_M	0.830	1.00
38_F	41_S	0.828	1.00
97_H	139_V	0.826	1.00
175_T	179_F	0.824	1.00
65_I	68_L	0.819	1.00
101_G	202_G	0.814	1.00
66_T	70_F	0.812	1.00
74_A	152_F	0.809	1.00
174_F	179_F	0.806	1.00
193_S	197_A	0.803	1.00
58_A	136_L	0.803	1.00
250_I	254_T	0.802	1.00
13_A	16_F	0.788	1.00
236_A	240_A	0.780	1.00
42_V	243_T	0.779	1.00
70_F	148_M	0.778	1.00
54_L	129_Y	0.778	1.00
248_S	252_I	0.773	1.00
90_D	93_A	0.769	1.00
77_L	86_E	0.764	1.00
53_G	56_F	0.759	1.00
66_T	140_S	0.756	1.00
61_L	137_I	0.755	1.00
170_E	174_F	0.754	1.00
21_L	25_P	0.751	1.00
51_S	54_L	0.747	1.00
127_Y	210_Y	0.735	1.00
159_Y	177_V	0.734	1.00
58_A	129_Y	0.734	1.00
67_V	148_M	0.730	1.00
129_Y	133_L	0.730	1.00
63_I	194_I	0.728	1.00
59_S	63_I	0.726	1.00
131_G	135_A	0.724	1.00
66_T	144_Y	0.720	1.00
18_L	22_L	0.718	1.00
74_A	145_I	0.716	1.00
19_S	22_L	0.714	1.00
174_F	178_V	0.713	1.00
155_L	182_S	0.713	1.00
77_L	149_Q	0.712	1.00
46_S	50_S	0.710	1.00
101_G	206_I	0.709	1.00
157_R	164_M	0.707	1.00
162_Y	166_L	0.705	1.00
24_L	27_L	0.700	1.00
100_V	138_I	0.691	1.00
148_M	152_F	0.690	1.00
29_L	238_I	0.690	1.00
77_L	85_I	0.686	1.00
229_E	240_A	0.684	1.00
140_S	193_S	0.683	1.00
80_H	83_P	0.683	1.00
252_I	256_R	0.682	1.00
130_T	134_L	0.678	1.00
40_K	43_A	0.677	1.00
186_I	189_A	0.676	1.00
200_E	221_V	0.676	1.00
69_I	137_I	0.674	1.00
42_V	236_A	0.673	1.00
162_Y	165_S	0.672	1.00
29_L	241_S	0.671	1.00
51_S	222_A	0.669	1.00
223_S	244_L	0.668	1.00
97_H	202_G	0.667	1.00
63_I	67_V	0.666	1.00
25_P	29_L	0.665	1.00
73_L	141_S	0.665	1.00
224_V	227_Y	0.663	1.00
86_E	146_R	0.659	1.00
234_F	238_I	0.658	1.00
224_V	228_N	0.658	1.00
128_T	219_A	0.656	1.00
49_L	52_I	0.655	1.00
208_A	220_Y	0.653	1.00
140_S	196_R	0.653	1.00
66_T	197_A	0.652	1.00
249_L	253_V	0.651	1.00
132_L	208_A	0.651	1.00
76_Y	80_H	0.650	1.00
109_S	126_Y	0.649	1.00
46_S	49_L	0.649	1.00
73_L	89_V	0.646	1.00
10_T	13_A	0.640	1.00
55_S	198_I	0.640	1.00
31_F	34_Y	0.640	1.00
10_T	14_I	0.640	1.00
98_P	206_I	0.640	1.00
185_G	189_A	0.638	1.00
250_I	257_I	0.637	1.00
8_F	11_L	0.636	1.00
36_P	39_V	0.632	1.00
55_S	223_S	0.631	1.00
58_A	132_L	0.630	1.00
106_F	109_S	0.628	1.00
15_S	19_S	0.627	1.00
178_V	181_L	0.621	1.00
186_I	190_G	0.618	1.00
132_L	136_L	0.616	1.00
66_T	137_I	0.610	1.00
169_S	175_T	0.606	1.00
93_A	142_P	0.601	1.00
89_V	142_P	0.601	1.00
222_A	244_L	0.600	1.00
173_V	177_V	0.599	1.00
131_G	207_V	0.593	1.00
204_V	224_V	0.592	1.00
62_S	137_I	0.589	1.00
33_G	239_S	0.586	1.00
226_I	240_A	0.583	1.00
58_A	133_L	0.582	1.00
59_S	198_I	0.579	1.00
105_I	126_Y	0.579	1.00
195_A	199_S	0.578	1.00
106_F	122_G	0.573	1.00
236_A	239_S	0.573	1.00
101_G	105_I	0.570	1.00
187_I	190_G	0.569	1.00
255_S	258_V	0.568	1.00
75_Y	178_V	0.567	1.00
175_T	178_V	0.563	1.00
253_V	256_R	0.563	1.00
247_F	257_I	0.562	1.00
47_S	220_Y	0.562	1.00
190_G	193_S	0.562	1.00
74_A	149_Q	0.561	1.00
47_S	225_Y	0.558	1.00
63_I	197_A	0.558	1.00
244_L	248_S	0.558	1.00
136_L	204_V	0.556	1.00
202_G	206_I	0.555	1.00
226_I	241_S	0.555	1.00
251_L	255_S	0.554	1.00
30_L	34_Y	0.553	1.00
45_S	49_L	0.552	1.00
93_A	143_I	0.551	1.00
69_I	141_S	0.550	1.00
250_I	253_V	0.549	1.00
14_I	18_L	0.549	1.00
58_A	62_S	0.549	1.00
147_S	185_G	0.546	1.00
196_R	199_S	0.544	1.00
178_V	182_S	0.542	1.00
87_T	91_V	0.541	1.00
238_I	241_S	0.539	1.00
202_G	205_V	0.537	1.00
39_V	239_S	0.536	1.00
88_L	92_P	0.533	1.00
104_L	107_I	0.530	1.00
73_L	76_Y	0.529	1.00
29_L	33_G	0.527	1.00
223_S	226_I	0.526	1.00
97_H	101_G	0.525	1.00
79_R	83_P	0.524	1.00
59_S	197_A	0.520	1.00
161_I	164_M	0.520	1.00
42_V	240_A	0.519	1.00
128_T	131_G	0.519	1.00
85_I	89_V	0.517	1.00
67_V	71_T	0.517	1.00
238_I	242_A	0.517	1.00
54_L	219_A	0.516	1.00
50_S	57_F	0.515	1.00
229_E	232_T	0.515	1.00
33_G	242_A	0.514	1.00
197_A	200_E	0.511	1.00
71_T	152_F	0.509	1.00
40_K	45_S	0.509	1.00
204_V	208_A	0.507	1.00
155_L	160_E	0.507	1.00
17_F	21_L	0.502	1.00
139_V	203_S	0.501	1.00
54_L	221_V	0.501	1.00
136_L	200_E	0.501	1.00
234_F	237_S	0.500	1.00
75_Y	79_R	0.500	1.00

Legend: The i and j are positions as given in the UniProt sequence. Only predictions with Prob ≥ 0.7 are listed. For all 3L/2 predictions, click on one of the links below.

Sco = ((raw_sco - min_sco)/(avg_sco - min_sco))/2 + 0.5
Prob = P(contact | Sco, seq80/√len)
seq80 = effective number of sequences, after reducing redundancy to 80% identity

Text file of predictions (all 3L/2 predictions)
Generate restraints for ROSETTA Structure Modeling
Upload PDB model overlay contacts on the model

HHsearch Results:

Legend: GREMLIN results (Prob ≥ 0.7) overlaid on top PDB hits. The grey/red filled circles underneath are pdb residue contacts (min distance < 5 Angstroms). The shade of the circles is based on the top 10 (or top 20 if e-value < 1E-20) HHsearch results which uses the overall probability and per-site alignment prob. Inter oligomeric contacts in the pdb are in shades of red.

PDB	Chains	Cov	%	HHΔ
2onkC	2	0.9283	100	0.283	Contact Map
3d31C	2	0.9132	100	0.299	Contact Map
4tquM	1	0.9811	100	0.31	Contact Map
3rlfG	1	0.9321	100	0.384	Contact Map
3rlfF	1	0.9547	100	0.387	Contact Map
4tquN	1	0.9019	100	0.397	Contact Map
4ymuD	2	0.8	99.9	0.472	Contact Map
3tuiA	2	0.7698	99.9	0.519	Contact Map
3zdqA	2	0.3396	5	0.952	Contact Map
4mrsA	2	0.3509	4.8	0.952	Contact Map

Sequence Conservation (Image Generated using WebLogo v3)

Legend: Color is used to show Hydrophobicity (Blue: Hydrophilic, Green: Neutral and Black: Hydrophobic). Amount of gaps is represented by width.

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