Q97Z91 - SULSO - GREMLIN Contacts

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Q97Z91 - Uncharacterized protein

UniProt:	Q97Z91	Sequences: MRLFIGIEVPQSPKLLEIFEIVKNAGADIKLVEPYNIHITLLFLGEVREDRVEEVKDSMSGLKFNKFKVTLKGLGAFPNLTRPRVVWVGIVEGQQQLRQIRSYILNELLKRKIRPEDDKDFSPHLTIGRVKSYNSISNLINTINENMNVDIGTFEVNNVVLFKSTLTPKGPIYDKLFEVSSIDRGGSTEDNKTH	Download Alignment We filter this alignment to remove sites that have many gaps before running GREMLIN. Date: 2015_01
Length:	194 (171)
Sequences:	2312 (1788)
Seq/√Len:	136.7

ECOLI - LIGT
BACSU - YTLP YJCG
SULSO - Q97Z91

GREMLIN Results:

Legend: The darker and larger the blue dots, the higher coevolution strength.

Residue pairs sorted by coevolution strength:

i	j	Sco	Prob
75_G	87_W	3.707	1.00
160_V	175_K	3.533	1.00
42_L	105_L	3.467	1.00
158_N	178_E	3.373	1.00
67_F	156_V	3.337	1.00
165_T	174_D	3.190	1.00
8_E	162_F	3.052	1.00
5_I	59_M	3.039	1.00
116_E	119_K	3.023	1.00
29_I	128_G	2.996	1.00
75_G	89_G	2.839	1.00
163_K	174_D	2.759	1.00
55_V	108_L	2.700	1.00
6_G	162_F	2.470	1.00
163_K	176_L	2.419	1.00
166_L	171_P	2.385	1.00
5_I	44_L	2.348	1.00
3_L	47_V	2.337	1.00
7_I	156_V	2.201	1.00
59_M	104_I	2.100	1.00
5_I	104_I	2.051	1.00
10_P	154_F	1.979	1.00
68_K	153_T	1.957	1.00
68_K	155_E	1.948	1.00
159_V	179_V	1.937	1.00
71_L	88_V	1.917	1.00
70_T	153_T	1.890	1.00
167_T	170_G	1.864	1.00
15_L	88_V	1.859	1.00
42_L	115_P	1.787	1.00
60_S	177_F	1.770	1.00
44_L	108_L	1.765	1.00
101_R	105_L	1.745	1.00
162_F	175_K	1.741	1.00
19_F	37_I	1.735	1.00
62_L	159_V	1.710	1.00
64_F	181_S	1.657	1.00
56_K	177_F	1.655	1.00
77_F	87_W	1.636	1.00
175_K	178_E	1.602	1.00
32_V	171_P	1.579	1.00
48_R	51_R	1.570	1.00
3_L	161_L	1.514	1.00
36_N	173_Y	1.512	1.00
64_F	103_Y	1.481	1.00
88_V	127_I	1.457	1.00
105_L	115_P	1.444	1.00
13_P	34_P	1.444	1.00
41_L	159_V	1.417	1.00
167_T	172_I	1.386	1.00
9_V	162_F	1.371	1.00
160_V	178_E	1.345	1.00
36_N	171_P	1.283	1.00
104_I	108_L	1.241	1.00
29_I	130_V	1.224	1.00
72_K	92_E	1.209	1.00
33_E	36_N	1.207	1.00
71_L	125_L	1.207	1.00
129_R	166_L	1.170	0.99
32_V	129_R	1.154	0.99
59_M	159_V	1.145	0.99
52_V	56_K	1.134	0.99
3_L	44_L	1.131	0.99
31_L	128_G	1.131	0.99
83_P	130_V	1.106	0.99
51_R	54_E	1.082	0.99
109_L	115_P	1.073	0.99
44_L	47_V	1.062	0.99
9_V	154_F	1.057	0.99
77_F	89_G	1.056	0.99
44_L	113_I	1.018	0.98
42_L	101_R	1.010	0.98
101_R	123_P	0.999	0.98
8_E	160_V	0.996	0.98
18_I	22_V	0.993	0.98
107_E	111_R	0.986	0.98
59_M	161_L	0.978	0.98
56_K	179_V	0.976	0.98
166_L	173_Y	0.971	0.98
86_V	128_G	0.952	0.98
39_I	90_I	0.930	0.97
44_L	104_I	0.927	0.97
161_L	179_V	0.926	0.97
41_L	100_I	0.924	0.97
78_P	84_R	0.918	0.97
93_G	96_Q	0.907	0.97
78_P	83_P	0.902	0.97
36_N	164_S	0.900	0.97
7_I	41_L	0.887	0.96
108_L	111_R	0.872	0.96
129_R	164_S	0.869	0.96
47_V	51_R	0.868	0.96
17_E	21_I	0.862	0.96
42_L	104_I	0.855	0.96
32_V	37_I	0.849	0.95
7_I	97_L	0.848	0.95
31_L	86_V	0.836	0.95
2_R	43_F	0.834	0.95
14_K	17_E	0.828	0.95
58_S	104_I	0.823	0.95
3_L	45_G	0.822	0.94
7_I	67_F	0.820	0.94
19_F	22_V	0.820	0.94
16_L	19_F	0.820	0.94
177_F	180_S	0.818	0.94
71_L	90_I	0.810	0.94
158_N	181_S	0.800	0.94
84_R	130_V	0.796	0.93
55_V	59_M	0.786	0.93
47_V	52_V	0.780	0.93
42_L	108_L	0.774	0.93
14_K	152_G	0.774	0.93
113_I	116_E	0.770	0.92
5_I	159_V	0.763	0.92
53_E	56_K	0.757	0.92
157_N	180_S	0.756	0.92
2_R	129_R	0.754	0.92
99_Q	103_Y	0.747	0.91
59_M	179_V	0.741	0.91
54_E	110_K	0.740	0.91
15_L	19_F	0.740	0.91
125_L	128_G	0.738	0.91
30_K	131_K	0.728	0.90
5_I	55_V	0.723	0.90
43_F	129_R	0.721	0.90
98_R	123_P	0.712	0.89
78_P	85_V	0.709	0.89
5_I	161_L	0.705	0.89
46_E	166_L	0.704	0.89
11_Q	34_P	0.701	0.88
2_R	46_E	0.696	0.88
69_V	97_L	0.693	0.88
30_K	129_R	0.690	0.88
71_L	154_F	0.690	0.88
58_S	107_E	0.688	0.87
167_T	171_P	0.687	0.87
166_L	170_G	0.687	0.87
61_G	107_E	0.685	0.87
18_I	21_I	0.684	0.87
93_G	98_R	0.683	0.87
101_R	120_D	0.680	0.87
2_R	164_S	0.678	0.87
29_I	131_K	0.674	0.86
48_R	52_V	0.674	0.86
107_E	110_K	0.672	0.86
58_S	108_L	0.671	0.86
69_V	90_I	0.670	0.86
42_L	113_I	0.667	0.86
7_I	159_V	0.667	0.86
141_N	145_E	0.667	0.86
67_F	100_I	0.667	0.86
85_V	129_R	0.663	0.85
33_E	170_G	0.660	0.85
39_I	125_L	0.657	0.85
101_R	121_F	0.655	0.85
62_L	103_Y	0.654	0.85
16_L	34_P	0.652	0.84
41_L	101_R	0.651	0.84
129_R	171_P	0.648	0.84
108_L	114_R	0.641	0.83
5_I	179_V	0.640	0.83
71_L	151_I	0.638	0.83
131_K	164_S	0.638	0.83
158_N	180_S	0.637	0.83
60_S	179_V	0.632	0.83
47_V	55_V	0.630	0.82
29_I	125_L	0.628	0.82
9_V	125_L	0.627	0.82
56_K	59_M	0.627	0.82
156_V	159_V	0.626	0.82
14_K	149_V	0.623	0.82
8_E	175_K	0.620	0.81
44_L	55_V	0.617	0.81
67_F	97_L	0.615	0.81
129_R	170_G	0.614	0.81
95_Q	98_R	0.607	0.80
56_K	60_S	0.607	0.80
131_K	172_I	0.606	0.80
130_V	139_L	0.603	0.80
98_R	102_S	0.603	0.80
29_I	36_N	0.602	0.79
32_V	36_N	0.600	0.79
76_A	139_L	0.600	0.79
57_D	145_E	0.597	0.79
13_P	16_L	0.596	0.79
15_L	18_I	0.595	0.79
28_D	134_N	0.590	0.78
7_I	154_F	0.589	0.78
65_N	96_Q	0.588	0.78
17_E	145_E	0.588	0.78
27_A	128_G	0.587	0.78
28_D	164_S	0.586	0.78
103_Y	107_E	0.584	0.77
30_K	33_E	0.582	0.77
92_E	95_Q	0.582	0.77
73_G	152_G	0.580	0.77
101_R	108_L	0.577	0.77
50_D	65_N	0.576	0.76
64_F	99_Q	0.573	0.76
15_L	122_S	0.571	0.76
72_K	150_D	0.570	0.76
131_K	170_G	0.565	0.75
16_L	20_E	0.564	0.75
19_F	23_K	0.563	0.75
59_M	62_L	0.560	0.74
41_L	97_L	0.559	0.74
25_A	139_L	0.559	0.74
5_I	42_L	0.559	0.74
57_D	180_S	0.554	0.74
130_V	171_P	0.552	0.73
72_K	151_I	0.550	0.73
104_I	107_E	0.550	0.73
32_V	126_T	0.546	0.73
50_D	54_E	0.544	0.72
75_G	134_N	0.542	0.72
61_G	110_K	0.542	0.72
3_L	176_L	0.541	0.72
69_V	154_F	0.540	0.72
58_S	111_R	0.539	0.72
47_V	113_I	0.538	0.71
62_L	107_E	0.537	0.71
12_S	152_G	0.536	0.71
72_K	95_Q	0.535	0.71
51_R	113_I	0.535	0.71
6_G	9_V	0.534	0.71
41_L	104_I	0.532	0.71
46_E	120_D	0.531	0.70
3_L	52_V	0.530	0.70
121_F	171_P	0.529	0.70
11_Q	145_E	0.528	0.70
105_L	108_L	0.526	0.70
95_Q	99_Q	0.525	0.70
29_I	135_S	0.525	0.70
32_V	83_P	0.524	0.69
46_E	84_R	0.524	0.69
168_P	171_P	0.523	0.69
44_L	179_V	0.522	0.69
90_I	94_Q	0.521	0.69
72_K	88_V	0.520	0.69
72_K	148_N	0.517	0.68
90_I	152_G	0.517	0.68
69_V	94_Q	0.516	0.68
48_R	54_E	0.514	0.68
58_S	110_K	0.513	0.68
19_F	164_S	0.513	0.68
165_T	172_I	0.510	0.67
86_V	125_L	0.510	0.67
127_I	133_Y	0.509	0.67
49_E	53_E	0.508	0.67
106_N	109_L	0.506	0.67
129_R	165_T	0.504	0.66
164_S	172_I	0.504	0.66
32_V	172_I	0.502	0.66
50_D	109_L	0.501	0.66
29_I	78_P	0.501	0.66
97_L	156_V	0.500	0.66

Legend: The i and j are positions as given in the UniProt sequence. Only predictions with Prob ≥ 0.7 are listed. For all 3L/2 predictions, click on one of the links below.

Sco = ((raw_sco - min_sco)/(avg_sco - min_sco))/2 + 0.5
Prob = P(contact | Sco, seq80/√len)
seq80 = effective number of sequences, after reducing redundancy to 80% identity

Text file of predictions (all 3L/2 predictions)
Generate restraints for ROSETTA Structure Modeling
Upload PDB model overlay contacts on the model

HHsearch Results:

Legend: GREMLIN results (Prob ≥ 0.7) overlaid on top PDB hits. The grey/red filled circles underneath are pdb residue contacts (min distance < 5 Angstroms). The shade of the circles is based on the top 10 (or top 20 if e-value < 1E-20) HHsearch results which uses the overall probability and per-site alignment prob. Inter oligomeric contacts in the pdb are in shades of red.

PDB	Chains	Cov	%	HHΔ
1vgjA	1	0.9278	100	0.264	Contact Map
1iuhA	1	0.8969	100	0.294	Contact Map
4qakA	1	0.8763	100	0.297	Contact Map
3j4qA	1	0.9742	100	0.314	Contact Map
2vfkA	1	0.9278	100	0.348	Contact Map
4h7wA	1	0.8711	100	0.409	Contact Map
2d4gA	2	0.8402	100	0.419	Contact Map
1jh6A	5	0.8763	100	0.429	Contact Map
2fsqA	1	0.8557	97.7	0.833	Contact Map
2ivyA	2	0.3608	41.1	0.93	Contact Map

Sequence Conservation (Image Generated using WebLogo v3)

Legend: Color is used to show Hydrophobicity (Blue: Hydrophilic, Green: Neutral and Black: Hydrophobic). Amount of gaps is represented by width.

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