Q97Z87 - SULSO - GREMLIN Contacts

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Q97Z87 - Uncharacterized protein

UniProt:	Q97Z87	Sequences: MKTTSYAVLKGNNYFLSLAELRALLNDDNAEINYFTGVAIFEGNKGDIANRSARIKRSGELVYISDDPKKINEMLRGGCFWIKEDVIMGSQKDKLNAINYEIKRGVKVSKECEKIDIILTDGVIILGKIKGQIDSKSLHEHEKKPFSQSGTMNPETSRLLVNLSRPKKEVLDPFVGTGSILIEARWLNYECIGSDLDKAMLQKTKINLNYFNYYCSLLFSSATNLPFRQITSIATDPPYGRSTKNKGAELTQLYEEFFSSASETLTKGGFLVFATDSRFNFIDKLKENSFIIKGLHYLYSHKSLTRAIYVVQKK	Download Alignment We filter this alignment to remove sites that have many gaps before running GREMLIN. Date: 2015_01
Length:	314 (268)
Sequences:	2990 (2138)
Seq/√Len:	130.6

ECOLI - RLMKL
BACSU - YPSC
HALSA - Q9HN57
SULSO - Q97Z87

GREMLIN Results:

Legend: The darker and larger the blue dots, the higher coevolution strength.

Residue pairs sorted by coevolution strength:

i	j	Sco	Prob
181_L	193_G	5.086	1.00
208_L	217_L	4.514	1.00
7_A	41_F	3.550	1.00
208_L	213_Y	3.203	1.00
64_I	123_V	3.139	1.00
69_K	73_E	2.939	1.00
95_L	99_N	2.791	1.00
23_A	162_N	2.684	1.00
148_Q	200_M	2.632	1.00
9_L	17_S	2.614	1.00
171_L	194_S	2.586	1.00
67_D	70_K	2.545	1.00
231_T	269_G	2.488	1.00
160_L	180_I	2.402	1.00
94_K	117_I	2.366	1.00
6_Y	38_V	2.341	1.00
201_L	217_L	2.297	1.00
31_E	42_E	2.255	1.00
162_N	187_L	2.184	1.00
98_I	115_I	2.168	1.00
201_L	219_F	2.120	1.00
221_S	224_N	2.116	1.00
49_A	130_K	2.079	1.00
152_M	274_A	2.060	1.00
194_S	220_S	2.024	1.00
145_P	210_Y	2.005	1.00
18_L	22_R	1.995	1.00
41_F	48_I	1.991	1.00
4_T	42_E	1.978	1.00
261_A	271_L	1.948	1.00
181_L	191_C	1.891	1.00
52_S	55_I	1.888	1.00
21_L	26_N	1.881	1.00
16_L	54_R	1.853	1.00
61_L	64_I	1.842	1.00
171_L	225_L	1.805	1.00
164_S	232_S	1.793	1.00
7_A	58_S	1.781	1.00
65_S	74_M	1.761	1.00
208_L	215_C	1.741	1.00
115_I	126_L	1.721	1.00
117_I	124_I	1.711	1.00
161_V	164_S	1.696	1.00
136_K	140_E	1.678	1.00
66_D	70_K	1.674	1.00
59_G	127_G	1.661	1.00
170_V	234_A	1.660	1.00
72_N	100_Y	1.657	1.00
75_L	94_K	1.643	1.00
174_F	235_T	1.631	1.00
119_L	124_I	1.630	1.00
260_S	264_T	1.625	1.00
48_I	52_S	1.599	1.00
204_T	217_L	1.580	1.00
170_V	181_L	1.558	1.00
257_F	261_A	1.554	1.00
245_N	249_E	1.549	1.00
198_K	219_F	1.545	1.00
5_S	45_K	1.539	1.00
209_N	214_Y	1.518	1.00
97_A	101_E	1.480	1.00
45_K	49_A	1.475	1.00
96_N	99_N	1.453	1.00
223_T	256_E	1.436	1.00
48_I	58_S	1.436	1.00
54_R	162_N	1.428	1.00
61_L	125_I	1.420	1.00
194_S	225_L	1.412	1.00
89_G	93_D	1.389	1.00
193_G	204_T	1.362	1.00
83_K	114_K	1.343	1.00
166_P	170_V	1.338	1.00
97_A	100_Y	1.338	1.00
146_F	206_I	1.337	1.00
88_M	91_Q	1.318	1.00
84_E	91_Q	1.309	1.00
117_I	126_L	1.308	1.00
190_E	216_S	1.296	1.00
164_S	272_V	1.289	1.00
254_Y	275_T	1.283	1.00
75_L	126_L	1.277	1.00
19_A	22_R	1.269	1.00
96_N	100_Y	1.267	1.00
5_S	43_G	1.254	1.00
4_T	61_L	1.248	1.00
89_G	92_K	1.248	1.00
235_T	257_F	1.231	1.00
84_E	89_G	1.230	1.00
222_A	260_S	1.229	1.00
146_F	203_K	1.229	1.00
10_K	155_E	1.224	1.00
173_P	235_T	1.219	1.00
57_R	129_I	1.218	1.00
81_W	84_E	1.214	1.00
99_N	102_I	1.204	0.99
13_N	159_L	1.198	0.99
94_K	126_L	1.187	0.99
15_F	19_A	1.182	0.99
60_E	130_K	1.181	0.99
95_L	100_Y	1.177	0.99
265_L	269_G	1.161	0.99
18_L	34_Y	1.154	0.99
170_V	180_I	1.148	0.99
53_A	57_R	1.147	0.99
181_L	217_L	1.140	0.99
169_E	232_S	1.136	0.99
148_Q	203_K	1.131	0.99
160_L	234_A	1.130	0.99
85_D	88_M	1.110	0.99
17_S	55_I	1.096	0.99
260_S	263_E	1.096	0.99
161_V	180_I	1.095	0.99
61_L	127_G	1.095	0.99
81_W	108_V	1.093	0.99
79_C	105_G	1.091	0.99
160_L	274_A	1.089	0.99
79_C	112_C	1.082	0.99
202_Q	205_K	1.080	0.99
170_V	184_A	1.079	0.99
200_M	203_K	1.077	0.99
259_S	263_E	1.073	0.99
107_K	111_E	1.069	0.99
206_I	209_N	1.067	0.99
7_A	21_L	1.065	0.99
195_D	201_L	1.058	0.99
50_N	53_A	1.056	0.99
82_I	91_Q	1.031	0.98
175_V	204_T	1.021	0.98
49_A	58_S	1.020	0.98
19_A	23_A	1.009	0.98
7_A	48_I	0.999	0.98
49_A	131_G	0.998	0.98
40_I	61_L	0.995	0.98
4_T	40_I	0.991	0.98
82_I	90_S	0.990	0.98
222_A	257_F	0.988	0.98
55_I	58_S	0.987	0.98
78_G	82_I	0.986	0.98
53_A	58_S	0.986	0.98
196_L	221_S	0.983	0.98
186_W	213_Y	0.974	0.98
86_V	89_G	0.972	0.98
45_K	130_K	0.970	0.98
269_G	275_T	0.970	0.98
60_E	128_K	0.968	0.98
94_K	99_N	0.962	0.97
70_K	74_M	0.962	0.97
256_E	259_S	0.959	0.97
246_K	251_T	0.951	0.97
80_F	93_D	0.947	0.97
131_G	135_S	0.938	0.97
129_I	135_S	0.936	0.97
269_G	273_F	0.928	0.97
97_A	102_I	0.922	0.97
52_S	56_K	0.921	0.97
52_S	58_S	0.920	0.97
19_A	165_R	0.919	0.97
17_S	162_N	0.913	0.96
161_V	170_V	0.910	0.96
15_F	34_Y	0.900	0.96
35_F	38_V	0.895	0.96
135_S	138_L	0.887	0.96
151_T	177_T	0.886	0.96
95_L	101_E	0.886	0.96
16_L	163_L	0.883	0.96
161_V	232_S	0.879	0.96
116_D	127_G	0.877	0.96
94_K	98_I	0.877	0.96
77_G	90_S	0.875	0.96
269_G	277_S	0.871	0.95
86_V	91_Q	0.861	0.95
206_I	210_Y	0.858	0.95
84_E	90_S	0.858	0.95
250_L	254_Y	0.857	0.95
84_E	88_M	0.855	0.95
161_V	184_A	0.855	0.95
171_L	192_I	0.852	0.95
150_G	242_S	0.851	0.95
19_A	162_N	0.850	0.95
94_K	97_A	0.849	0.95
138_L	141_H	0.846	0.95
17_S	54_R	0.845	0.95
84_E	92_K	0.840	0.94
145_P	206_I	0.837	0.94
160_L	276_D	0.836	0.94
72_N	97_A	0.835	0.94
77_G	82_I	0.830	0.94
65_S	124_I	0.830	0.94
261_A	265_L	0.827	0.94
84_E	93_D	0.825	0.94
161_V	234_A	0.825	0.94
230_I	268_G	0.824	0.94
68_P	72_N	0.824	0.94
27_D	31_E	0.821	0.94
185_R	191_C	0.820	0.94
100_Y	104_R	0.815	0.93
96_N	101_E	0.812	0.93
195_D	200_M	0.812	0.93
96_N	102_I	0.809	0.93
6_Y	127_G	0.804	0.93
88_M	92_K	0.800	0.93
90_S	93_D	0.793	0.93
16_L	19_A	0.792	0.93
22_R	27_D	0.791	0.92
272_V	275_T	0.791	0.92
147_S	203_K	0.789	0.92
64_I	125_I	0.788	0.92
172_D	176_G	0.788	0.92
220_S	226_P	0.788	0.92
80_F	85_D	0.787	0.92
233_I	261_A	0.785	0.92
45_K	60_E	0.783	0.92
225_L	260_S	0.781	0.92
82_I	93_D	0.780	0.92
195_D	220_S	0.777	0.92
81_W	111_E	0.773	0.92
46_G	49_A	0.773	0.92
235_T	273_F	0.771	0.91
137_S	141_H	0.768	0.91
192_I	216_S	0.766	0.91
47_D	50_N	0.763	0.91
5_S	41_F	0.763	0.91
226_P	263_E	0.758	0.91
78_G	84_E	0.756	0.91
22_R	32_I	0.747	0.90
77_G	87_I	0.746	0.90
76_R	103_K	0.738	0.90
79_C	84_E	0.735	0.89
16_L	162_N	0.733	0.89
45_K	50_N	0.731	0.89
213_Y	217_L	0.728	0.89
16_L	159_L	0.727	0.89
20_E	24_L	0.726	0.89
67_D	72_N	0.725	0.89
85_D	93_D	0.723	0.89
69_K	72_N	0.719	0.88
5_S	26_N	0.716	0.88
79_C	91_Q	0.715	0.88
227_F	264_T	0.713	0.88
270_F	274_A	0.712	0.88
107_K	110_K	0.706	0.87
99_N	106_V	0.704	0.87
194_S	218_L	0.703	0.87
51_R	58_S	0.701	0.87
82_I	85_D	0.694	0.87
257_F	273_F	0.692	0.86
53_A	56_K	0.692	0.86
79_C	82_I	0.691	0.86
216_S	220_S	0.691	0.86
4_T	64_I	0.691	0.86
193_G	215_C	0.689	0.86
82_I	88_M	0.687	0.86
103_K	106_V	0.682	0.86
7_A	39_A	0.682	0.86
226_P	264_T	0.680	0.85
80_F	99_N	0.679	0.85
181_L	215_C	0.679	0.85
33_N	40_I	0.678	0.85
194_S	222_A	0.675	0.85
185_R	213_Y	0.673	0.85
150_G	236_D	0.673	0.85
95_L	102_I	0.671	0.85
205_K	214_Y	0.669	0.85
81_W	93_D	0.667	0.84
141_H	186_W	0.667	0.84
79_C	107_K	0.665	0.84
143_K	182_I	0.662	0.84
78_G	81_W	0.661	0.84
49_A	52_S	0.660	0.84
201_L	204_T	0.659	0.84
146_F	199_A	0.658	0.84
169_E	230_I	0.658	0.84
151_T	154_P	0.657	0.83
52_S	60_E	0.657	0.83
240_G	244_K	0.656	0.83
244_K	249_E	0.655	0.83
56_K	153_N	0.655	0.83
233_I	271_L	0.654	0.83
182_I	211_F	0.652	0.83
45_K	244_K	0.648	0.83
147_S	200_M	0.646	0.82
249_E	252_Q	0.643	0.82
51_R	57_R	0.641	0.82
77_G	80_F	0.641	0.82
82_I	92_K	0.641	0.82
181_L	208_L	0.640	0.82
268_G	272_V	0.640	0.82
6_Y	40_I	0.637	0.82
70_K	73_E	0.637	0.82
252_Q	256_E	0.636	0.81
262_S	265_L	0.632	0.81
269_G	272_V	0.630	0.81
52_S	57_R	0.629	0.81
80_F	102_I	0.627	0.81
131_G	136_K	0.627	0.81
144_K	182_I	0.627	0.81
35_F	40_I	0.627	0.81
182_I	213_Y	0.626	0.80
161_V	166_P	0.625	0.80
56_K	137_S	0.624	0.80
274_A	277_S	0.623	0.80
88_M	93_D	0.622	0.80
6_Y	10_K	0.621	0.80
169_E	189_Y	0.621	0.80
202_Q	206_I	0.620	0.80
194_S	216_S	0.620	0.80
47_D	51_R	0.619	0.80
74_M	124_I	0.616	0.79
66_D	74_M	0.615	0.79
52_S	65_S	0.614	0.79
166_P	169_E	0.613	0.79
221_S	256_E	0.610	0.79
170_V	191_C	0.609	0.79
55_I	65_S	0.607	0.78
59_G	116_D	0.607	0.78
236_D	243_T	0.605	0.78
80_F	88_M	0.604	0.78
49_A	57_R	0.601	0.78
220_S	224_N	0.600	0.78
53_A	60_E	0.598	0.77
172_D	238_P	0.596	0.77
204_T	215_C	0.595	0.77
175_V	193_G	0.593	0.77
26_N	44_N	0.590	0.76
159_L	163_L	0.589	0.76
216_S	219_F	0.589	0.76
149_S	199_A	0.587	0.76
143_K	158_R	0.587	0.76
174_F	253_L	0.586	0.76
9_L	137_S	0.585	0.76
139_H	155_E	0.581	0.75
171_L	227_F	0.581	0.75
78_G	112_C	0.578	0.75
237_P	243_T	0.577	0.75
157_S	179_S	0.577	0.75
85_D	118_I	0.576	0.75
83_K	116_D	0.576	0.75
106_V	111_E	0.573	0.74
56_K	60_E	0.573	0.74
261_A	264_T	0.573	0.74
201_L	205_K	0.570	0.74
86_V	93_D	0.570	0.74
144_K	211_F	0.568	0.74
86_V	92_K	0.567	0.74
6_Y	11_G	0.566	0.73
77_G	84_E	0.566	0.73
205_K	216_S	0.560	0.73
72_N	75_L	0.560	0.73
94_K	102_I	0.559	0.72
253_L	257_F	0.559	0.72
142_E	154_P	0.559	0.72
202_Q	216_S	0.559	0.72
52_S	63_Y	0.551	0.71
166_P	191_C	0.550	0.71
269_G	274_A	0.550	0.71
117_I	127_G	0.548	0.71
129_I	138_L	0.548	0.71
11_G	36_T	0.548	0.71
192_I	218_L	0.547	0.71
7_A	55_I	0.547	0.71
199_A	202_Q	0.547	0.71
78_G	83_K	0.546	0.71
37_G	153_N	0.546	0.71
86_V	90_S	0.545	0.71
50_N	57_R	0.542	0.70
245_N	253_L	0.540	0.70
220_S	229_Q	0.540	0.70
80_F	84_E	0.539	0.70
175_V	183_E	0.537	0.69
218_L	221_S	0.537	0.69
16_L	52_S	0.536	0.69
24_L	52_S	0.532	0.69
59_G	129_I	0.532	0.69
78_G	113_E	0.530	0.68
66_D	122_G	0.530	0.68
203_K	207_N	0.529	0.68
81_W	90_S	0.529	0.68
46_G	50_N	0.529	0.68
47_D	65_S	0.529	0.68
142_E	150_G	0.528	0.68
82_I	89_G	0.524	0.68
85_D	89_G	0.523	0.67
199_A	203_K	0.522	0.67
146_F	210_Y	0.520	0.67
53_A	59_G	0.519	0.67
27_D	216_S	0.517	0.67
67_D	73_E	0.514	0.66
85_D	91_Q	0.511	0.66
77_G	81_W	0.510	0.66
226_P	260_S	0.509	0.65
58_S	63_Y	0.509	0.65
160_L	275_T	0.507	0.65
48_I	54_R	0.506	0.65
171_L	174_F	0.506	0.65
79_C	85_D	0.506	0.65
46_G	60_E	0.502	0.64
82_I	86_V	0.502	0.64
178_G	195_D	0.501	0.64
250_L	253_L	0.501	0.64
158_R	183_E	0.501	0.64
150_G	243_T	0.500	0.64
153_N	156_T	0.500	0.64

Legend: The i and j are positions as given in the UniProt sequence. Only predictions with Prob ≥ 0.7 are listed. For all 3L/2 predictions, click on one of the links below.

Sco = ((raw_sco - min_sco)/(avg_sco - min_sco))/2 + 0.5
Prob = P(contact | Sco, seq80/√len)
seq80 = effective number of sequences, after reducing redundancy to 80% identity

Text file of predictions (all 3L/2 predictions)
Generate restraints for ROSETTA Structure Modeling
Upload PDB model overlay contacts on the model

HHsearch Results:

Legend: GREMLIN results (Prob ≥ 0.7) overlaid on top PDB hits. The grey/red filled circles underneath are pdb residue contacts (min distance < 5 Angstroms). The shade of the circles is based on the top 10 (or top 20 if e-value < 1E-20) HHsearch results which uses the overall probability and per-site alignment prob. Inter oligomeric contacts in the pdb are in shades of red.

PDB	Chains	Cov	%	HHΔ
3v97A	1	0.9459	100	0.34	Contact Map
3ldgA	1	0.9427	100	0.341	Contact Map
3lduA	1	0.949	100	0.359	Contact Map
3k0bA	1	0.9395	100	0.361	Contact Map
3tmaA	2	0.9618	100	0.408	Contact Map
3tm4A	1	0.949	100	0.414	Contact Map
3s1sA	1	0.9554	99.8	0.747	Contact Map
2ar0A	1	0.8344	99.8	0.755	Contact Map
2f8lA	1	0.7898	99.8	0.757	Contact Map
3evzA	1	0.5892	99.8	0.758	Contact Map

Sequence Conservation (Image Generated using WebLogo v3)

Legend: Color is used to show Hydrophobicity (Blue: Hydrophilic, Green: Neutral and Black: Hydrophobic). Amount of gaps is represented by width.

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