GREMLIN Database
Q97Z73 - Uncharacterized protein
UniProt: Q97Z73 Sequences:
Download Alignment
We filter this alignment to remove sites that have many gaps before running GREMLIN.

Date: 2015_01
Length: 138 (130)
Sequences: 963 (721)
Seq/√Len: 63.2

GREMLIN Results:

Legend: The darker and larger the blue dots, the higher coevolution strength.

Residue pairs sorted by coevolution strength:
i j Sco Prob
103_K106_R4.6921.00
66_N101_Y4.6621.00
75_K95_S3.8631.00
104_D108_S3.4881.00
73_E95_S2.8791.00
42_C124_L2.7891.00
88_P122_D2.6021.00
80_G87_V2.4951.00
102_S107_I2.3581.00
106_R109_D2.1451.00
93_E131_N2.0201.00
65_I68_I2.0011.00
30_L33_S1.9371.00
27_K35_N1.9321.00
88_P126_R1.9011.00
69_E99_I1.8901.00
30_L34_D1.8241.00
28_V48_S1.7601.00
108_S112_K1.6860.99
18_I25_E1.6850.99
53_T118_C1.6560.99
47_I72_I1.6120.99
71_Y99_I1.5980.99
22_N40_E1.5850.99
26_I44_A1.5520.99
10_G47_I1.5420.99
90_G122_D1.5210.99
42_C123_T1.5170.99
11_R69_E1.5140.98
77_D87_V1.4920.98
63_V106_R1.4680.98
97_E133_N1.3990.97
71_Y97_E1.3940.97
42_C45_S1.3900.97
19_V44_A1.3890.97
57_I117_R1.3850.97
93_E129_K1.3500.97
26_I41_F1.3370.97
79_K84_V1.2690.95
61_K113_E1.2670.95
115_E118_C1.2570.95
63_V110_I1.2570.95
9_E71_Y1.2510.95
54_V110_I1.2020.94
50_L96_Y1.1700.93
88_P128_V1.1640.93
11_R97_E1.1360.92
46_A94_V1.1350.92
67_S101_Y1.1150.91
6_F39_E1.1080.91
66_N102_S1.0960.91
80_G89_P1.0940.90
61_K109_D1.0930.90
13_D18_I1.0900.90
17_V52_L1.0890.90
9_E69_E1.0890.90
83_G90_G1.0880.90
75_K93_E1.0610.89
36_P113_E1.0580.89
6_F31_L1.0480.88
54_V114_A1.0480.88
79_K87_V1.0440.88
12_L55_Y1.0430.88
122_D126_R1.0350.88
53_T57_I1.0140.87
63_V102_S1.0110.87
39_E120_M0.9900.85
103_K108_S0.9810.85
21_L44_A0.9730.84
59_R118_C0.9520.83
43_L74_G0.9330.82
60_E117_R0.9240.81
16_K27_K0.9170.81
112_K116_E0.8870.78
11_R18_I0.8850.78
39_E76_M0.8790.78
81_F119_P0.8500.75
19_V48_S0.8500.75
57_I60_E0.8460.75
37_T81_F0.8410.75
31_L81_F0.8390.75
5_T73_E0.8370.74
54_V98_L0.8270.73
30_L82_Q0.8260.73
8_A21_L0.8250.73
43_L94_V0.8190.73
54_V111_L0.8160.72
26_I36_P0.8160.72
37_T40_E0.8130.72
54_V68_I0.8070.72
72_I96_Y0.7930.70
20_D25_E0.7900.70
43_L119_P0.7880.70
10_G96_Y0.7840.69
20_D23_G0.7810.69
52_L81_F0.7640.67
18_I27_K0.7630.67
12_L17_V0.7620.67
12_L15_D0.7600.67
69_E86_E0.7570.67
95_S131_N0.7550.66
55_Y118_C0.7390.65
69_E92_L0.7310.64
71_Y104_D0.7300.64
61_K110_I0.7270.64
73_E97_E0.7260.63
10_G19_V0.7210.63
8_A123_T0.7180.63
57_I83_G0.7150.62
68_I71_Y0.7120.62
90_G123_T0.7120.62
67_S97_E0.7100.62
28_V41_F0.6960.60
94_V124_L0.6930.60
7_T73_E0.6930.60
37_T119_P0.6890.59
108_S133_N0.6820.59
105_S109_D0.6800.58
105_S112_K0.6760.58
99_I112_K0.6730.58
29_G32_G0.6690.57
95_S133_N0.6680.57
78_T118_C0.6670.57
115_E121_R0.6650.57
111_L123_T0.6630.56
25_E109_D0.6590.56
114_A118_C0.6590.56
33_S118_C0.6590.56
29_G40_E0.6580.56
108_S111_L0.6520.55
40_E122_D0.6470.55
38_P44_A0.6460.55
41_F48_S0.6450.54
8_A12_L0.6400.54
60_E78_T0.6400.54
74_G94_V0.6310.53
15_D35_N0.6300.53
56_Y81_F0.6210.52
6_F78_T0.6200.52
37_T120_M0.6170.51
120_M124_L0.6160.51
70_G98_L0.6160.51
11_R62_G0.6160.51
109_D112_K0.6130.51
24_T31_L0.6110.51
48_S119_P0.6100.50
11_R14_G0.6100.50
61_K106_R0.6020.49
64_T102_S0.6000.49
13_D16_K0.5990.49
11_R20_D0.5940.49
88_P123_T0.5930.48
93_E128_V0.5910.48
50_L132_I0.5910.48
121_R130_V0.5900.48
89_P117_R0.5840.47
93_E133_N0.5840.47
36_P79_K0.5830.47
23_G34_D0.5810.47
5_T75_K0.5760.46
116_E129_K0.5700.46
58_A131_N0.5700.46
54_V100_V0.5630.45
78_T84_V0.5610.45
85_E116_E0.5610.45
37_T76_M0.5590.45
54_V117_R0.5580.44
31_L40_E0.5570.44
99_I108_S0.5500.44
51_I68_I0.5470.43
24_T29_G0.5450.43
7_T116_E0.5400.42
14_G99_I0.5400.42
28_V122_D0.5370.42
21_L36_P0.5370.42
103_K126_R0.5330.42
19_V28_V0.5290.41
38_P81_F0.5270.41
53_T81_F0.5240.41
10_G17_V0.5220.40
123_T128_V0.5200.40
7_T71_Y0.5190.40
121_R125_T0.5160.40
65_I111_L0.5160.40
102_S110_I0.5160.40
24_T132_I0.5130.39
114_A119_P0.5120.39
112_K115_E0.5110.39
57_I81_F0.5100.39
17_V21_L0.5090.39
77_D116_E0.5080.39
77_D96_Y0.5030.38
41_F96_Y0.5020.38
110_I120_M0.5010.38
107_I134_W0.5000.38
Legend: The i and j are positions as given in the UniProt sequence. Only predictions with Prob ≥ 0.7 are listed. For all 3L/2 predictions, click on one of the links below.

Sco = ((raw_sco - min_sco)/(avg_sco - min_sco))/2 + 0.5
Prob = P(contact | Sco, seq80/√len)
seq80 = effective number of sequences, after reducing redundancy to 80% identity

HHsearch Results:
Legend: GREMLIN results (Prob ≥ 0.7) overlaid on top PDB hits. The grey/red filled circles underneath are pdb residue contacts (min distance < 5 Angstroms). The shade of the circles is based on the top 10 (or top 20 if e-value < 1E-20) HHsearch results which uses the overall probability and per-site alignment prob. Inter oligomeric contacts in the pdb are in shades of red.
PDB Chains Cov % HHΔ  
2oplA 2 0.9928 100 0.397 Contact Map
1lqlA 2 0.971 99.9 0.46 Contact Map
2onfA 2 0.9493 99.9 0.479 Contact Map
3cjeA 2 0.9638 99.9 0.48 Contact Map
1ml8A 2 0.8841 99.9 0.483 Contact Map
1ukkA 2 0.9058 99.9 0.485 Contact Map
2d7vA 2 0.8986 99.9 0.494 Contact Map
3eerA 2 0.942 99.9 0.495 Contact Map
1qwiA 2 0.9275 99.9 0.498 Contact Map
4mh4A 2 0.913 99.9 0.503 Contact Map

Sequence Conservation (Image Generated using WebLogo v3)
Legend: Color is used to show Hydrophobicity (Blue: Hydrophilic, Green: Neutral and Black: Hydrophobic). Amount of gaps is represented by width.

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