GREMLIN Database
Q97Z66 - Molybdenum transport protein ModA related protein (ModA)
UniProt: Q97Z66 Sequences:
Download Alignment
We filter this alignment to remove sites that have many gaps before running GREMLIN.

Date: 2015_01
Length: 118 (102)
Sequences: 1104 (815)
Seq/√Len: 80.7

GREMLIN Results:

Legend: The darker and larger the blue dots, the higher coevolution strength.

Residue pairs sorted by coevolution strength:
i j Sco Prob
30_E83_D5.6841.00
27_R90_E5.5601.00
23_V86_L3.4551.00
47_K51_E2.7831.00
31_E41_S2.4921.00
36_S40_K2.4841.00
28_A31_E2.1601.00
95_E103_Y2.1181.00
48_F52_Y2.0291.00
84_K88_I1.9561.00
25_L49_A1.9081.00
21_G44_V1.8721.00
28_A42_L1.8451.00
39_S49_A1.8341.00
54_K58_E1.8011.00
24_K28_A1.7791.00
21_G42_L1.7581.00
56_I63_S1.7461.00
80_E83_D1.7151.00
37_S40_K1.6851.00
65_E77_K1.6071.00
28_A41_S1.5100.99
32_T41_S1.4590.99
70_G74_G1.4230.99
70_G73_A1.3460.99
28_A32_T1.2870.98
92_A100_L1.2850.98
22_G52_Y1.2600.98
44_V48_F1.2350.97
95_E98_E1.2250.97
22_G56_I1.2000.97
20_K93_Q1.1950.97
96_I99_I1.1860.97
29_I53_V1.1850.97
29_I64_V1.1480.96
90_E93_Q1.1480.96
22_G48_F1.0940.95
20_K89_Y1.0910.95
63_S82_L1.0820.95
18_I23_V1.0490.94
60_L63_S1.0270.93
8_W21_G1.0250.93
69_G74_G1.0220.93
48_F51_E1.0160.93
10_E16_P0.9970.92
36_S47_K0.9920.92
78_V86_L0.9820.91
57_N61_S0.9710.91
80_E84_K0.9620.90
96_I100_L0.9540.90
87_N91_E0.9510.90
10_E15_K0.9490.90
93_Q97_S0.9420.89
82_L86_L0.9380.89
97_S101_E0.9360.89
34_S75_G0.9290.89
35_L47_K0.9130.88
95_E102_K0.8950.87
36_S76_S0.8860.86
63_S85_L0.8850.86
91_E94_K0.8810.86
102_K105_K0.8680.85
53_V57_N0.8670.85
44_V52_Y0.8630.85
22_G55_R0.8620.85
12_E15_K0.8620.85
83_D87_N0.8580.84
47_K57_N0.8410.83
5_F8_W0.8400.83
30_E78_V0.8220.82
27_R86_L0.8190.82
43_G72_N0.8090.81
92_A103_Y0.8080.81
17_L29_I0.8050.81
35_L53_V0.7970.80
103_Y106_K0.7960.80
6_K10_E0.7840.79
47_K50_W0.7840.79
53_V64_V0.7830.79
94_K98_E0.7680.77
95_E106_K0.7630.77
30_E105_K0.7620.77
98_E102_K0.7610.77
9_I25_L0.7370.74
39_S48_F0.7150.72
42_L58_E0.7140.72
57_N62_D0.7030.71
89_Y93_Q0.6960.70
63_S81_K0.6840.69
17_L60_L0.6820.69
81_K85_L0.6810.68
88_I107_I0.6780.68
64_V68_K0.6710.67
44_V50_W0.6700.67
67_R77_K0.6530.65
52_Y56_I0.6510.65
55_R59_I0.6430.64
5_F96_I0.6350.63
51_E71_K0.6260.62
54_K57_N0.6240.62
6_K12_E0.6200.61
35_L40_K0.6180.61
19_G42_L0.6170.61
47_K52_Y0.6090.60
26_L64_V0.6080.60
29_I39_S0.6060.59
64_V82_L0.6060.59
99_I104_N0.6030.59
63_S78_V0.6020.59
5_F100_L0.6010.59
71_K88_I0.6010.59
36_S64_V0.6000.59
53_V62_D0.6000.59
16_P55_R0.5960.58
17_L99_I0.5930.58
66_M95_E0.5900.57
17_L59_I0.5890.57
24_K42_L0.5890.57
39_S46_Y0.5840.57
22_G47_K0.5830.57
26_L56_I0.5830.57
95_E99_I0.5790.56
77_K83_D0.5780.56
33_G87_N0.5760.56
8_W60_L0.5730.55
35_L76_S0.5720.55
33_G63_S0.5670.54
16_P48_F0.5650.54
6_K17_L0.5630.54
84_K102_K0.5570.53
7_I93_Q0.5560.53
13_D59_I0.5550.53
49_A75_G0.5540.53
40_K50_W0.5520.53
27_R31_E0.5520.53
81_K87_N0.5520.53
88_I91_E0.5490.52
51_E55_R0.5470.52
62_D74_G0.5340.50
9_I82_L0.5330.50
8_W12_E0.5300.50
77_K94_K0.5270.49
81_K88_I0.5240.49
92_A104_N0.5200.48
38_A101_E0.5180.48
21_G48_F0.5150.48
63_S77_K0.5120.47
43_G48_F0.5090.47
26_L78_V0.5040.46
78_V82_L0.5040.46
37_S75_G0.5040.46
43_G106_K0.5000.46
78_V95_E0.5000.46
Legend: The i and j are positions as given in the UniProt sequence. Only predictions with Prob ≥ 0.7 are listed. For all 3L/2 predictions, click on one of the links below.

Sco = ((raw_sco - min_sco)/(avg_sco - min_sco))/2 + 0.5
Prob = P(contact | Sco, seq80/√len)
seq80 = effective number of sequences, after reducing redundancy to 80% identity

HHsearch Results:
Legend: GREMLIN results (Prob ≥ 0.7) overlaid on top PDB hits. The grey/red filled circles underneath are pdb residue contacts (min distance < 5 Angstroms). The shade of the circles is based on the top 10 (or top 20 if e-value < 1E-20) HHsearch results which uses the overall probability and per-site alignment prob. Inter oligomeric contacts in the pdb are in shades of red.
PDB Chains Cov % HHΔ  
2ijlA 2 0.9237 99.7 0.541 Contact Map
1b9mA 2 0.9492 99.6 0.585 Contact Map
3szpA 3 0.7881 98.7 0.731 Contact Map
3mz1A 2 0.0593 98.6 0.737 Contact Map
1ixcA 4 0.7627 98.6 0.737 Contact Map
4x6gA 4 0.822 98.6 0.738 Contact Map
1uthA 2 0.178 98.6 0.74 Contact Map
2h98A 2 0.0508 98.6 0.74 Contact Map
4pzjA 2 0.5847 98.6 0.741 Contact Map
3fxqA 3 0.7966 98.6 0.742 Contact Map

Sequence Conservation (Image Generated using WebLogo v3)
Legend: Color is used to show Hydrophobicity (Blue: Hydrophilic, Green: Neutral and Black: Hydrophobic). Amount of gaps is represented by width.

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