GREMLIN Database
Q97Z63 - Amino acid transporter
UniProt: Q97Z63 Sequences:
Download Alignment
We filter this alignment to remove sites that have many gaps before running GREMLIN.

Date: 2015_01
Length: 647 (507)
Sequences: 1103 (695)
Seq/√Len: 30.9

GREMLIN Results:

Legend: The darker and larger the blue dots, the higher coevolution strength.

Residue pairs sorted by coevolution strength:
i j Sco Prob
333_F337_T4.4791.00
332_P337_T4.0661.00
51_A54_G3.9761.00
160_L417_L3.8271.00
331_G337_T3.5901.00
508_R512_I3.5181.00
332_P336_L3.3141.00
508_R511_G3.2421.00
331_G336_L3.2391.00
31_Y275_I3.2081.00
333_F336_L3.1311.00
511_G514_K3.1281.00
55_G288_I3.0501.00
507_N511_G2.9791.00
504_F507_N2.9691.00
50_A54_G2.9061.00
505_Y511_G2.9031.00
192_T195_A2.8351.00
196_L199_L2.8281.00
330_S333_F2.8251.00
505_Y512_I2.7621.00
331_G335_V2.7501.00
89_T386_N2.6941.00
328_I332_P2.6881.00
195_A199_L2.6661.00
332_P335_V2.6611.00
329_S332_P2.6561.00
329_S337_T2.6431.00
210_G213_F2.6001.00
511_G515_A2.5811.00
330_S336_L2.5791.00
332_P338_Q2.5501.00
224_S227_Y2.5030.99
193_F196_L2.5010.99
330_S337_T2.4960.99
498_L502_F2.4560.99
232_V235_A2.4390.99
505_Y508_R2.4310.99
327_S337_T2.4290.99
328_I337_T2.4150.99
512_I515_A2.4020.99
327_S333_F2.3310.99
504_F511_G2.3100.99
197_L200_D2.2910.99
507_N510_L2.2900.99
327_S330_S2.2820.99
528_D531_M2.2740.99
192_T196_L2.2390.99
330_S335_V2.2210.99
222_G226_I2.1900.99
333_F338_Q2.1750.98
221_G224_S2.1660.98
493_G497_G2.1440.98
195_A198_A2.1270.98
335_V338_Q2.1260.98
221_G227_Y2.1080.98
507_N514_K2.0900.98
70_F470_I2.0850.98
494_I499_P2.0790.98
123_A159_L2.0700.98
508_R515_A2.0590.98
329_S335_V2.0570.98
328_I333_F2.0380.98
327_S331_G2.0290.98
328_I336_L2.0260.98
511_G518_I2.0240.98
575_D578_R2.0170.97
196_L200_D2.0110.97
453_K456_N2.0070.97
510_L514_K2.0040.97
443_I472_T1.9950.97
209_G213_F1.9840.97
505_Y515_A1.9840.97
329_S333_F1.9380.97
226_I230_S1.9230.97
507_N512_I1.9170.97
508_R514_K1.9140.96
328_I331_G1.8850.96
327_S336_L1.8580.96
439_I476_G1.8560.96
191_I195_A1.8480.96
211_G214_P1.8470.96
515_A518_I1.8470.96
512_I518_I1.8380.96
210_G214_P1.8300.95
157_G161_I1.8270.95
202_H205_N1.8170.95
466_I470_I1.7970.95
157_G418_L1.7890.95
220_K224_S1.7770.95
231_A234_F1.7720.95
330_S334_L1.7680.94
228_G231_A1.7670.94
330_S338_Q1.7610.94
209_G214_P1.7530.94
263_K267_F1.7170.94
327_S332_P1.7130.93
119_E372_Y1.7120.93
194_L198_A1.7000.93
509_I513_N1.6900.93
493_G498_L1.6810.93
506_S511_G1.6800.93
193_F197_L1.6670.93
115_V119_E1.6460.92
494_I498_L1.6450.92
226_I229_F1.6400.92
504_F510_L1.6350.92
227_Y230_S1.6350.92
221_G226_I1.6100.91
54_G61_W1.5990.91
121_A426_L1.5900.91
157_G414_F1.5710.90
337_T347_A1.5640.90
188_V357_L1.5550.90
407_I411_I1.5530.90
510_L513_N1.5380.89
505_Y510_L1.5230.89
385_S400_K1.5190.88
230_S234_F1.5120.88
512_I519_V1.5090.88
328_I334_L1.5030.88
220_K223_S1.4950.88
74_A471_A1.4920.88
504_F514_K1.4890.87
328_I338_Q1.4850.87
504_F508_R1.4850.87
204_A210_G1.4810.87
124_I159_L1.4740.87
230_S233_L1.4720.87
499_P503_I1.4700.87
428_G431_S1.4680.87
497_G501_F1.4580.86
551_G561_L1.4540.86
220_K226_I1.4460.86
197_L203_S1.4440.86
514_K518_I1.4290.85
453_K457_R1.4250.85
350_F353_L1.4180.85
113_A409_A1.4070.84
54_G60_S1.4030.84
192_T197_L1.4030.84
504_F512_I1.3960.84
167_N370_W1.3940.84
127_I194_L1.3870.83
506_S510_L1.3860.83
227_Y232_V1.3800.83
270_L274_L1.3790.83
193_F199_L1.3720.83
506_S512_I1.3570.82
507_N515_A1.3400.81
529_L532_A1.3380.81
38_I279_L1.3350.81
203_S210_G1.3280.81
204_A207_T1.3140.80
162_F166_L1.3010.79
514_K517_S1.2930.79
164_F410_L1.2820.78
222_G227_Y1.2740.78
221_G225_G1.2650.77
574_P577_K1.2630.77
329_S336_L1.2630.77
50_A55_G1.2590.77
27_F117_A1.2510.76
515_A519_V1.2490.76
223_S226_I1.2470.76
510_L518_I1.2440.76
223_S234_F1.2380.76
498_L501_F1.2330.75
494_I497_G1.2310.75
196_L204_A1.2300.75
524_N527_I1.2300.75
209_G212_F1.2190.74
511_G519_V1.2110.74
225_G229_F1.2100.74
51_A55_G1.2030.73
493_G496_L1.1990.73
188_V356_L1.1980.73
507_N518_I1.1920.73
226_I231_A1.1880.73
203_S207_T1.1870.72
56_A60_S1.1860.72
293_W296_L1.1860.72
506_S514_K1.1860.72
222_G225_G1.1740.72
251_A268_A1.1710.71
225_G228_G1.1670.71
250_Q269_V1.1650.71
327_S334_L1.1630.71
575_D579_E1.1540.70
513_N516_Y1.1540.70
203_S213_F1.1530.70
196_L201_L1.1470.70
507_N513_N1.1390.69
59_L158_L1.1320.69
380_L384_A1.1260.68
119_E368_T1.1230.68
508_R518_I1.1190.68
331_G334_L1.1180.68
331_G338_Q1.1140.68
224_S230_S1.1130.67
495_F498_L1.1110.67
512_I516_Y1.1110.67
198_A496_L1.1100.67
396_I400_K1.1100.67
456_N459_F1.1070.67
123_A366_S1.1010.67
511_G517_S1.0990.66
493_G501_F1.0860.66
196_L205_N1.0860.66
518_I522_V1.0850.65
24_L273_L1.0800.65
201_L204_A1.0770.65
198_A578_R1.0770.65
567_F573_P1.0750.65
257_E381_Y1.0710.64
203_S206_F1.0640.64
223_S227_Y1.0640.64
155_L159_L1.0600.64
174_L370_W1.0600.64
495_F503_I1.0570.63
327_S335_V1.0560.63
80_A263_K1.0540.63
570_K578_R1.0510.63
201_L550_F1.0500.63
166_L476_G1.0490.63
334_L338_Q1.0410.62
43_L185_K1.0390.62
219_V224_S1.0380.62
203_S211_G1.0350.62
505_Y518_I1.0310.61
229_F232_V1.0300.61
197_L201_L1.0300.61
224_S229_F1.0280.61
105_T280_Y1.0270.61
127_I387_G1.0260.61
257_E378_R1.0240.61
251_A269_V1.0230.61
329_S338_Q1.0130.60
411_I575_D1.0010.59
207_T214_P1.0000.59
69_M270_L0.9980.59
57_A60_S0.9950.59
93_H101_G0.9920.58
242_I360_D0.9920.58
200_D207_T0.9890.58
384_A409_A0.9850.58
91_Y379_T0.9850.58
227_Y231_A0.9830.58
327_S338_Q0.9790.57
204_A213_F0.9770.57
119_E438_Y0.9770.57
116_P413_G0.9760.57
508_R519_V0.9750.57
58_I281_T0.9710.57
222_G228_G0.9700.57
43_L188_V0.9700.57
75_Y91_Y0.9690.57
509_I516_Y0.9650.56
227_Y234_F0.9620.56
454_E457_R0.9620.56
196_L202_H0.9610.56
505_Y513_N0.9610.56
199_L203_S0.9610.56
54_G58_I0.9520.55
199_L204_A0.9460.55
328_I335_V0.9400.54
200_D203_S0.9320.54
196_L203_S0.9290.53
540_S543_G0.9150.52
175_G374_G0.9120.52
92_P101_G0.9100.52
507_N516_Y0.9100.52
453_K459_F0.9090.52
185_K368_T0.9090.52
119_E365_P0.9010.51
166_L171_V0.9010.51
220_K225_G0.8950.51
197_L213_F0.8920.50
224_S228_G0.8910.50
567_F570_K0.8860.50
29_L258_G0.8830.50
560_M570_K0.8780.49
161_I410_L0.8780.49
195_A202_H0.8780.49
518_I521_G0.8720.49
120_A124_I0.8690.49
286_S291_I0.8690.49
201_L209_G0.8670.48
508_R513_N0.8660.48
252_V441_G0.8660.48
541_G547_N0.8640.48
499_P502_F0.8620.48
484_F488_F0.8580.48
226_I234_F0.8580.48
524_N528_D0.8570.48
502_F505_Y0.8570.48
494_I501_F0.8570.48
502_F513_N0.8560.48
27_F31_Y0.8520.47
298_L412_V0.8520.47
88_I249_R0.8430.46
49_T98_G0.8400.46
498_L512_I0.8400.46
126_Y361_A0.8390.46
292_D296_L0.8390.46
560_M564_D0.8370.46
200_D206_F0.8360.46
225_G231_A0.8360.46
228_G232_V0.8350.46
201_L207_T0.8340.46
100_V103_I0.8330.46
515_A521_G0.8290.45
26_K264_D0.8280.45
94_Y99_L0.8250.45
336_L347_A0.8240.45
51_A61_W0.8230.45
58_I61_W0.8230.45
561_L564_D0.8220.45
510_L515_A0.8220.45
498_L505_Y0.8210.45
186_L190_T0.8200.45
473_L498_L0.8200.45
50_A57_A0.8190.45
334_L337_T0.8180.44
497_G505_Y0.8140.44
187_L356_L0.8120.44
250_Q253_E0.8110.44
122_A276_A0.8070.44
177_V407_I0.8060.44
392_I404_Y0.8060.44
184_W187_L0.8060.44
506_S513_N0.8030.43
268_A272_S0.8030.43
192_T199_L0.8020.43
203_S209_G0.8000.43
29_L45_A0.7900.42
61_W64_A0.7890.42
201_L205_N0.7860.42
165_F573_P0.7860.42
567_F577_K0.7830.42
54_G59_L0.7820.42
69_M473_L0.7800.41
47_L261_P0.7800.41
134_L160_L0.7790.41
392_I407_I0.7780.41
120_A159_L0.7780.41
511_G516_Y0.7770.41
415_I547_N0.7750.41
186_L474_A0.7740.41
98_G101_G0.7730.41
505_Y514_K0.7720.41
521_G528_D0.7700.41
501_F506_S0.7650.40
119_E433_A0.7650.40
494_I502_F0.7640.40
23_S32_L0.7630.40
154_G158_L0.7620.40
98_G154_G0.7590.40
200_D204_A0.7580.40
519_V522_V0.7580.40
109_F409_A0.7580.40
250_Q375_T0.7570.40
111_S434_T0.7570.40
120_A472_T0.7560.40
253_E375_T0.7550.40
119_E434_T0.7530.39
26_K31_Y0.7510.39
504_F518_I0.7510.39
279_L570_K0.7510.39
114_S365_P0.7500.39
480_Y488_F0.7470.39
260_N423_W0.7460.39
493_G499_P0.7460.39
222_G229_F0.7440.39
200_D205_N0.7400.38
501_F507_N0.7400.38
470_I578_R0.7380.38
556_V562_I0.7360.38
457_R463_A0.7360.38
472_T566_L0.7340.38
539_T546_N0.7340.38
71_V442_G0.7330.38
501_F504_F0.7320.38
491_F498_L0.7280.37
37_I272_S0.7280.37
76_A249_R0.7280.37
494_I505_Y0.7270.37
178_T371_I0.7260.37
457_R460_R0.7250.37
125_E357_L0.7250.37
151_L154_G0.7250.37
245_Y378_R0.7240.37
401_I406_L0.7220.37
61_W284_Q0.7200.37
221_G229_F0.7200.37
83_P167_N0.7200.37
571_T578_R0.7190.37
220_K227_Y0.7190.37
574_P578_R0.7170.37
545_A549_F0.7170.37
116_P238_S0.7160.37
124_I127_I0.7160.37
507_N517_S0.7150.37
408_A412_V0.7140.36
205_N214_P0.7140.36
455_L462_P0.7130.36
498_L503_I0.7130.36
195_A352_A0.7110.36
520_V527_I0.7100.36
554_I571_T0.7100.36
104_I233_L0.7100.36
199_L205_N0.7080.36
273_L438_Y0.7080.36
57_A127_I0.7080.36
66_I439_I0.7040.36
495_F502_F0.7030.36
394_L568_L0.7030.36
162_F228_G0.7020.36
220_K229_F0.7010.35
224_S233_L0.7010.35
65_G282_L0.7000.35
197_L211_G0.7000.35
393_F408_A0.6990.35
38_I249_R0.6990.35
472_T495_F0.6980.35
198_A204_A0.6950.35
559_A567_F0.6950.35
111_S365_P0.6940.35
395_K404_Y0.6930.35
286_S290_G0.6930.35
161_I165_F0.6930.35
61_W65_G0.6920.35
573_P576_V0.6910.35
534_L554_I0.6910.35
242_I280_Y0.6900.35
491_F497_G0.6890.35
288_I295_K0.6890.35
101_G471_A0.6860.34
276_A280_Y0.6850.34
98_G509_I0.6840.34
281_T287_F0.6830.34
24_L175_G0.6820.34
288_I296_L0.6810.34
207_T212_F0.6810.34
357_L443_I0.6790.34
97_G101_G0.6790.34
555_V558_A0.6780.34
509_I527_I0.6760.34
24_L261_P0.6760.34
71_V74_A0.6740.34
221_G407_I0.6720.33
129_S330_S0.6720.33
84_K90_R0.6710.33
282_L499_P0.6690.33
198_A203_S0.6670.33
246_L269_V0.6650.33
193_F282_L0.6650.33
510_L517_S0.6640.33
198_A201_L0.6640.33
157_G177_V0.6630.33
446_A469_P0.6620.33
109_F437_T0.6610.33
513_N518_I0.6610.33
197_L210_G0.6590.32
196_L210_G0.6590.32
569_L573_P0.6580.32
206_F213_F0.6580.32
164_F470_I0.6570.32
165_F353_L0.6570.32
224_S356_L0.6560.32
289_G292_D0.6550.32
513_N517_S0.6550.32
206_F210_G0.6530.32
355_V411_I0.6500.32
366_S493_G0.6500.32
491_F505_Y0.6490.32
364_S431_S0.6480.32
527_I531_M0.6460.32
127_I559_A0.6460.32
43_L118_I0.6460.32
235_A412_V0.6450.31
206_F209_G0.6450.31
62_I282_L0.6430.31
57_A61_W0.6420.31
567_F574_P0.6420.31
106_W573_P0.6420.31
226_I429_F0.6410.31
194_L500_L0.6400.31
202_H211_G0.6400.31
95_T448_L0.6400.31
61_W67_L0.6390.31
184_W534_L0.6390.31
162_F498_L0.6380.31
192_T198_A0.6380.31
28_E147_I0.6380.31
197_L205_N0.6380.31
333_F347_A0.6380.31
193_F200_D0.6360.31
224_S231_A0.6350.31
520_V525_L0.6340.31
161_I219_V0.6310.30
63_I362_V0.6290.30
503_I514_K0.6290.30
364_S367_G0.6290.30
506_S509_I0.6280.30
378_R402_P0.6280.30
85_S244_A0.6270.30
88_I92_P0.6260.30
152_G422_S0.6250.30
246_L250_Q0.6220.30
353_L356_L0.6210.30
570_K574_P0.6200.30
378_R381_Y0.6200.30
194_L199_L0.6180.30
196_L213_F0.6180.30
191_I196_L0.6170.30
122_A427_V0.6160.29
433_A468_A0.6160.29
288_I292_D0.6150.29
387_G559_A0.6140.29
251_A370_W0.6140.29
295_K298_L0.6140.29
572_V576_V0.6140.29
185_K371_I0.6130.29
362_V446_A0.6130.29
184_W360_D0.6120.29
58_I65_G0.6120.29
570_K573_P0.6120.29
124_I358_T0.6120.29
379_T434_T0.6110.29
365_P434_T0.6090.29
558_A561_L0.6080.29
233_L271_G0.6060.29
288_I298_L0.6060.29
503_I507_N0.6060.29
472_T476_G0.6040.29
135_I516_Y0.6040.29
501_F573_P0.6040.29
282_L285_V0.6040.29
36_G175_G0.6040.29
453_K506_S0.6030.29
111_S383_F0.6030.29
371_I377_T0.6020.29
204_A214_P0.6020.29
516_Y522_V0.6010.28
58_I63_I0.6010.28
161_I564_D0.5990.28
188_V275_I0.5990.28
68_V273_L0.5980.28
53_A275_I0.5980.28
87_G101_G0.5960.28
62_I66_I0.5960.28
161_I220_K0.5950.28
158_L394_L0.5940.28
246_L253_E0.5940.28
74_A81_A0.5930.28
472_T570_K0.5930.28
381_Y401_I0.5930.28
128_G417_L0.5920.28
541_G548_L0.5920.28
292_D295_K0.5910.28
229_F407_I0.5910.28
293_W297_Y0.5900.28
110_L227_Y0.5890.28
211_G570_K0.5890.28
220_K230_S0.5880.28
149_T429_F0.5870.28
516_Y556_V0.5860.28
548_L563_G0.5860.28
231_A235_A0.5860.28
470_I473_L0.5850.27
40_S239_T0.5850.27
372_Y438_Y0.5840.27
457_R461_V0.5830.27
513_N519_V0.5830.27
519_V523_I0.5830.27
331_G347_A0.5830.27
36_G181_A0.5820.27
219_V222_G0.5820.27
112_A375_T0.5810.27
506_S515_A0.5800.27
223_S230_S0.5800.27
528_D559_A0.5800.27
92_P386_N0.5790.27
172_N473_L0.5790.27
55_G284_Q0.5780.27
539_T548_L0.5770.27
244_A434_T0.5770.27
244_A284_Q0.5770.27
205_N209_G0.5760.27
59_L64_A0.5760.27
496_L501_F0.5750.27
338_Q347_A0.5750.27
467_I522_V0.5750.27
160_L414_F0.5740.27
32_L182_G0.5730.27
31_Y34_L0.5730.27
257_E405_S0.5710.27
34_L47_L0.5710.27
207_T211_G0.5710.27
66_I198_A0.5700.26
258_G269_V0.5700.26
68_V248_F0.5680.26
86_G386_N0.5670.26
37_I365_P0.5660.26
506_S517_S0.5660.26
441_G475_A0.5660.26
372_Y478_I0.5650.26
391_E476_G0.5650.26
55_G61_W0.5650.26
242_I276_A0.5640.26
219_V278_A0.5640.26
228_G422_S0.5630.26
54_G57_A0.5620.26
191_I259_K0.5610.26
381_Y396_I0.5610.26
329_S347_A0.5610.26
441_G445_L0.5610.26
239_T428_G0.5600.26
166_L452_A0.5600.26
298_L578_R0.5590.26
53_A159_L0.5590.26
205_N387_G0.5590.26
240_G428_G0.5590.26
54_G402_P0.5580.26
522_V526_V0.5570.26
522_V528_D0.5570.26
195_A200_D0.5570.26
40_S106_W0.5560.26
280_Y462_P0.5560.26
329_S334_L0.5560.26
402_P552_I0.5550.26
257_E401_I0.5550.26
104_I256_G0.5540.26
53_A101_G0.5540.26
33_S42_W0.5540.26
527_I530_V0.5540.26
497_G502_F0.5530.25
193_F206_F0.5530.25
279_L283_L0.5520.25
564_D569_L0.5520.25
180_G191_I0.5510.25
394_L567_F0.5500.25
285_V551_G0.5500.25
239_T253_E0.5500.25
190_T195_A0.5490.25
571_T574_P0.5490.25
105_T535_L0.5480.25
189_P280_Y0.5470.25
49_T55_G0.5460.25
383_F413_G0.5460.25
166_L336_L0.5460.25
519_V526_V0.5460.25
201_L214_P0.5460.25
384_A394_L0.5460.25
367_G371_I0.5440.25
260_N577_K0.5430.25
73_L186_L0.5430.25
501_F505_Y0.5430.25
91_Y434_T0.5430.25
504_F515_A0.5420.25
502_F511_G0.5420.25
285_V504_F0.5420.25
265_I280_Y0.5410.25
198_A574_P0.5410.25
502_F507_N0.5410.25
128_G134_L0.5410.25
280_Y402_P0.5410.25
504_F519_V0.5410.25
158_L469_P0.5400.25
496_L536_F0.5400.25
228_G233_L0.5400.25
509_I514_K0.5400.25
249_R253_E0.5390.25
193_F204_A0.5380.25
72_G117_A0.5380.25
453_K461_V0.5380.25
292_D298_L0.5380.25
259_K403_T0.5370.24
165_F572_V0.5370.24
193_F202_H0.5360.24
571_T576_V0.5360.24
279_L364_S0.5360.24
266_P280_Y0.5360.24
165_F567_F0.5350.24
495_F499_P0.5350.24
124_I155_L0.5340.24
88_I413_G0.5340.24
50_A53_A0.5340.24
77_E82_I0.5330.24
91_Y245_Y0.5320.24
178_T185_K0.5320.24
198_A202_H0.5320.24
158_L407_I0.5310.24
35_G255_G0.5300.24
526_V575_D0.5300.24
246_L365_P0.5300.24
506_S519_V0.5300.24
514_K519_V0.5290.24
295_K555_V0.5280.24
287_F291_I0.5280.24
548_L553_Y0.5270.24
128_G152_G0.5260.24
239_T438_Y0.5260.24
92_P103_I0.5260.24
521_G527_I0.5260.24
480_Y484_F0.5260.24
44_F423_W0.5240.24
58_I469_P0.5240.24
121_A127_I0.5230.24
298_L575_D0.5230.24
291_I295_K0.5220.24
156_A572_V0.5220.24
225_G232_V0.5220.24
34_L169_F0.5220.24
135_I232_V0.5210.24
163_F245_Y0.5210.24
168_Y532_A0.5210.24
550_F576_V0.5200.23
53_A536_F0.5200.23
285_V472_T0.5200.23
272_S275_I0.5200.23
397_G403_T0.5190.23
159_L289_G0.5190.23
105_T266_P0.5180.23
456_N462_P0.5180.23
154_G349_F0.5170.23
496_L506_S0.5170.23
32_L416_F0.5170.23
508_R517_S0.5170.23
122_A260_N0.5160.23
241_V245_Y0.5160.23
285_V290_G0.5160.23
295_K498_L0.5150.23
242_I423_W0.5150.23
378_R384_A0.5140.23
435_V475_A0.5130.23
165_F186_L0.5130.23
194_L544_A0.5120.23
162_F229_F0.5120.23
132_P148_L0.5120.23
103_I436_L0.5110.23
414_F418_L0.5110.23
452_A455_L0.5100.23
175_G481_W0.5100.23
352_A355_V0.5080.23
41_G245_Y0.5060.23
62_I187_L0.5060.23
249_R368_T0.5060.23
542_L565_M0.5050.23
219_V227_Y0.5050.23
521_G556_V0.5050.23
186_L411_I0.5050.23
111_S413_G0.5040.23
111_S114_S0.5040.23
463_A466_I0.5040.23
78_I402_P0.5020.22
86_G89_T0.5010.22
405_S546_N0.5010.22
360_D459_F0.5000.22
Legend: The i and j are positions as given in the UniProt sequence. Only predictions with Prob ≥ 0.7 are listed. For all 3L/2 predictions, click on one of the links below.

Sco = ((raw_sco - min_sco)/(avg_sco - min_sco))/2 + 0.5
Prob = P(contact | Sco, seq80/√len)
seq80 = effective number of sequences, after reducing redundancy to 80% identity

HHsearch Results:
Legend: GREMLIN results (Prob ≥ 0.7) overlaid on top PDB hits. The grey/red filled circles underneath are pdb residue contacts (min distance < 5 Angstroms). The shade of the circles is based on the top 10 (or top 20 if e-value < 1E-20) HHsearch results which uses the overall probability and per-site alignment prob. Inter oligomeric contacts in the pdb are in shades of red.
PDB Chains Cov % HHΔ  
3l1lA 2 0.6445 100 0.583 Contact Map
3giaA 1 0.6615 100 0.617 Contact Map
4djkA 2 0.6584 100 0.617 Contact Map
2jlnA 1 0.6631 99 0.918 Contact Map
3dh4A 3 0.728 98 0.938 Contact Map
3g40A 2 0.1561 98 0.939 Contact Map
2xq2A 2 0.7342 97.5 0.945 Contact Map
4wgvA 2 0.5858 97.3 0.947 Contact Map
4xp4A 1 0.7032 95.5 0.956 Contact Map
4us3A 1 0.6213 94.1 0.96 Contact Map

Sequence Conservation (Image Generated using WebLogo v3)
Legend: Color is used to show Hydrophobicity (Blue: Hydrophilic, Green: Neutral and Black: Hydrophobic). Amount of gaps is represented by width.

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