GREMLIN Database
Q97Z58 - Uncharacterized protein
UniProt: Q97Z58 Sequences:
Download Alignment
We filter this alignment to remove sites that have many gaps before running GREMLIN.

Date: 2015_01
Length: 133 (116)
Sequences: 11632 (8844)
Seq/√Len: 821.1

GREMLIN Results:

Legend: The darker and larger the blue dots, the higher coevolution strength.

Residue pairs sorted by coevolution strength:
i j Sco Prob
29_T33_E2.9141.00
45_S109_H2.5261.00
89_V112_V2.3851.00
93_I97_E2.3251.00
27_A80_A2.2531.00
91_E114_N2.2351.00
89_V93_I2.1231.00
87_I105_N2.1211.00
25_V29_T2.0971.00
34_V79_L2.0711.00
26_E29_T2.0351.00
90_D93_I1.9951.00
25_V34_V1.9051.00
25_V46_V1.9051.00
23_F41_R1.8731.00
78_R81_A1.8171.00
77_V81_A1.7941.00
27_A55_K1.7801.00
14_V98_A1.7411.00
91_E120_I1.7351.00
87_I107_I1.7071.00
34_V58_F1.6471.00
98_A110_L1.5831.00
108_R125_I1.5561.00
89_V98_A1.5301.00
111_P119_I1.5071.00
101_I105_N1.4791.00
37_L41_R1.4791.00
28_N80_A1.4281.00
49_T53_I1.3871.00
89_V110_L1.3691.00
36_K40_E1.3611.00
34_V46_V1.3601.00
88_I113_K1.3541.00
29_T37_L1.3181.00
15_K91_E1.2711.00
26_E50_E1.2491.00
114_N118_N1.2361.00
25_V79_L1.2341.00
45_S57_I1.2261.00
27_A50_E1.2181.00
32_Q75_D1.2121.00
30_S33_E1.2101.00
90_D114_N1.2081.00
93_I101_I1.2021.00
26_E49_T1.2011.00
87_I101_I1.1931.00
58_F79_L1.1871.00
54_P86_L1.1751.00
54_P119_I1.1611.00
23_F37_L1.1611.00
60_D64_V1.1511.00
100_K104_A1.1261.00
44_G60_D1.1221.00
49_T55_K1.1201.00
31_L82_T1.1171.00
58_F63_A1.1111.00
98_A123_F1.1061.00
94_D97_E1.0911.00
32_Q36_K1.0871.00
60_D108_R1.0831.00
17_F123_F1.0711.00
23_F43_V1.0701.00
35_C63_A1.0701.00
58_F82_T1.0671.00
13_R16_D1.0251.00
17_F95_V1.0231.00
114_N120_I1.0081.00
57_I111_P0.9971.00
33_E36_K0.9951.00
15_K92_D0.9901.00
95_V128_V0.9691.00
43_V46_V0.9641.00
97_E101_I0.9531.00
109_H122_M0.9411.00
19_S127_D0.9351.00
54_P111_P0.9131.00
77_V82_T0.9081.00
33_E37_L0.9081.00
25_V37_L0.8831.00
52_G118_N0.8671.00
89_V101_I0.8601.00
66_A82_T0.8581.00
45_S108_R0.8511.00
38_M46_V0.8461.00
75_D78_R0.8411.00
79_L83_M0.8401.00
56_G83_M0.8301.00
14_V89_V0.8241.00
27_A49_T0.8201.00
13_R94_D0.8201.00
101_I110_L0.8141.00
53_I118_N0.8121.00
74_S77_V0.7901.00
97_E100_K0.7881.00
32_Q76_E0.7831.00
37_L40_E0.7821.00
28_N78_R0.7781.00
88_I117_G0.7711.00
102_M110_L0.7701.00
103_A130_K0.7531.00
93_I98_A0.7451.00
68_A71_L0.7441.00
61_R108_R0.7411.00
47_V119_I0.7141.00
108_R126_T0.6981.00
45_S122_M0.6961.00
18_M121_G0.6951.00
14_V17_F0.6911.00
24_Q49_T0.6871.00
37_L46_V0.6861.00
34_V38_M0.6791.00
50_E53_I0.6741.00
44_G108_R0.6691.00
70_S77_V0.6661.00
64_V108_R0.6581.00
30_S78_R0.6511.00
25_V47_V0.6481.00
69_T74_S0.6481.00
19_S22_V0.6481.00
113_K119_I0.6471.00
66_A72_S0.6471.00
53_I117_G0.6461.00
28_N50_E0.6451.00
63_A66_A0.6421.00
66_A69_T0.6421.00
117_G120_I0.6401.00
31_L58_F0.6391.00
102_M125_I0.6371.00
24_Q52_G0.6361.00
80_A83_M0.6261.00
45_S59_T0.6241.00
49_T52_G0.6111.00
96_F100_K0.6081.00
15_K114_N0.6081.00
90_D113_K0.6041.00
109_H125_I0.6031.00
24_Q48_V0.6031.00
44_G109_H0.5971.00
103_A125_I0.5961.00
60_D126_T0.5941.00
113_K117_G0.5921.00
59_T62_D0.5851.00
126_T130_K0.5801.00
13_R92_D0.5801.00
14_V18_M0.5771.00
47_V54_P0.5751.00
57_I86_L0.5721.00
86_L111_P0.5721.00
63_A68_A0.5681.00
64_V68_A0.5651.00
44_G61_R0.5611.00
48_V52_G0.5531.00
39_L65_K0.5521.00
14_V123_F0.5511.00
43_V124_S0.5491.00
101_I104_A0.5461.00
99_L129_Y0.5451.00
71_L74_S0.5331.00
44_G125_I0.5321.00
23_F46_V0.5311.00
36_K71_L0.5271.00
62_D107_I0.5241.00
72_S75_D0.5241.00
18_M112_V0.5231.00
111_P122_M0.5211.00
99_L128_V0.5171.00
29_T46_V0.5151.00
95_V123_F0.5131.00
107_I110_L0.5121.00
14_V93_I0.5111.00
55_K83_M0.5101.00
57_I109_H0.5091.00
126_T129_Y0.5001.00
Legend: The i and j are positions as given in the UniProt sequence. Only predictions with Prob ≥ 0.7 are listed. For all 3L/2 predictions, click on one of the links below.

Sco = ((raw_sco - min_sco)/(avg_sco - min_sco))/2 + 0.5
Prob = P(contact | Sco, seq80/√len)
seq80 = effective number of sequences, after reducing redundancy to 80% identity

HHsearch Results:
Legend: GREMLIN results (Prob ≥ 0.7) overlaid on top PDB hits. The grey/red filled circles underneath are pdb residue contacts (min distance < 5 Angstroms). The shade of the circles is based on the top 10 (or top 20 if e-value < 1E-20) HHsearch results which uses the overall probability and per-site alignment prob. Inter oligomeric contacts in the pdb are in shades of red.
PDB Chains Cov % HHΔ  
3l2bA 2 0.8872 99.8 0.305 Contact Map
2qrdG 1 1 99.8 0.321 Contact Map
4cooA 2 0.9699 99.8 0.326 Contact Map
3pc3A 2 0.9774 99.8 0.326 Contact Map
2ef7A 3 0.9248 99.8 0.328 Contact Map
1pvmA 2 0.9774 99.8 0.332 Contact Map
3t4nC 1 1 99.8 0.333 Contact Map
2uv4A 2 0.9925 99.8 0.336 Contact Map
2p9mA 2 0.9474 99.8 0.337 Contact Map
3fv6A 2 0.985 99.8 0.338 Contact Map

Sequence Conservation (Image Generated using WebLogo v3)
Legend: Color is used to show Hydrophobicity (Blue: Hydrophilic, Green: Neutral and Black: Hydrophobic). Amount of gaps is represented by width.

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