Q97Z58 - SULSO - GREMLIN Contacts

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Q97Z58 - Uncharacterized protein

UniProt:	Q97Z58	Sequences: MGSYLKSLYMLKRVKDFMSTPVFQVEANTSLQEVCKLMLERGVGSVVVTEQGIPKGIFTDRDAVKAIATSLSSSDEVRLAATMGNLIIVDEDIDVFEALKIMAANKIRHLPVKNKDGNIIGMFSITDVYKVYG	Download Alignment We filter this alignment to remove sites that have many gaps before running GREMLIN. Date: 2015_01
Length:	133 (116)
Sequences:	11632 (8844)
Seq/√Len:	821.1

ECOLI - IMDH KDSD GUTQ CORC YFJD
BACSU - ACUB CCPN YHCV YKUL YLBB IMDH MGTE YTOI YRKA YQHB YHDT YHDP
HALSA - Q9HQD0 Q9HPF4 Q9HRK9 Q9HNT8 Q9HMW8 Q9HNB6 Q9HR38 IMDH Q9HPN8 Q9HRX1 Q9HHN9 Q9HN02
SULSO - Q97Z58 Q97U20 Q97U00 Q981B7 Q97V95 Q7LXY4 Q97VN1 Q97U50 Q97VD7 Q7LXN6 Q97U23

GREMLIN Results:

Legend: The darker and larger the blue dots, the higher coevolution strength.

Residue pairs sorted by coevolution strength:

i	j	Sco	Prob
29_T	33_E	2.914	1.00
45_S	109_H	2.526	1.00
89_V	112_V	2.385	1.00
93_I	97_E	2.325	1.00
27_A	80_A	2.253	1.00
91_E	114_N	2.235	1.00
89_V	93_I	2.123	1.00
87_I	105_N	2.121	1.00
25_V	29_T	2.097	1.00
34_V	79_L	2.071	1.00
26_E	29_T	2.035	1.00
90_D	93_I	1.995	1.00
25_V	34_V	1.905	1.00
25_V	46_V	1.905	1.00
23_F	41_R	1.873	1.00
78_R	81_A	1.817	1.00
77_V	81_A	1.794	1.00
27_A	55_K	1.780	1.00
14_V	98_A	1.741	1.00
91_E	120_I	1.735	1.00
87_I	107_I	1.707	1.00
34_V	58_F	1.647	1.00
98_A	110_L	1.583	1.00
108_R	125_I	1.556	1.00
89_V	98_A	1.530	1.00
111_P	119_I	1.507	1.00
101_I	105_N	1.479	1.00
37_L	41_R	1.479	1.00
28_N	80_A	1.428	1.00
49_T	53_I	1.387	1.00
89_V	110_L	1.369	1.00
36_K	40_E	1.361	1.00
34_V	46_V	1.360	1.00
88_I	113_K	1.354	1.00
29_T	37_L	1.318	1.00
15_K	91_E	1.271	1.00
26_E	50_E	1.249	1.00
114_N	118_N	1.236	1.00
25_V	79_L	1.234	1.00
45_S	57_I	1.226	1.00
27_A	50_E	1.218	1.00
32_Q	75_D	1.212	1.00
30_S	33_E	1.210	1.00
90_D	114_N	1.208	1.00
93_I	101_I	1.202	1.00
26_E	49_T	1.201	1.00
87_I	101_I	1.193	1.00
58_F	79_L	1.187	1.00
54_P	86_L	1.175	1.00
54_P	119_I	1.161	1.00
23_F	37_L	1.161	1.00
60_D	64_V	1.151	1.00
100_K	104_A	1.126	1.00
44_G	60_D	1.122	1.00
49_T	55_K	1.120	1.00
31_L	82_T	1.117	1.00
58_F	63_A	1.111	1.00
98_A	123_F	1.106	1.00
94_D	97_E	1.091	1.00
32_Q	36_K	1.087	1.00
60_D	108_R	1.083	1.00
17_F	123_F	1.071	1.00
23_F	43_V	1.070	1.00
35_C	63_A	1.070	1.00
58_F	82_T	1.067	1.00
13_R	16_D	1.025	1.00
17_F	95_V	1.023	1.00
114_N	120_I	1.008	1.00
57_I	111_P	0.997	1.00
33_E	36_K	0.995	1.00
15_K	92_D	0.990	1.00
95_V	128_V	0.969	1.00
43_V	46_V	0.964	1.00
97_E	101_I	0.953	1.00
109_H	122_M	0.941	1.00
19_S	127_D	0.935	1.00
54_P	111_P	0.913	1.00
77_V	82_T	0.908	1.00
33_E	37_L	0.908	1.00
25_V	37_L	0.883	1.00
52_G	118_N	0.867	1.00
89_V	101_I	0.860	1.00
66_A	82_T	0.858	1.00
45_S	108_R	0.851	1.00
38_M	46_V	0.846	1.00
75_D	78_R	0.841	1.00
79_L	83_M	0.840	1.00
56_G	83_M	0.830	1.00
14_V	89_V	0.824	1.00
27_A	49_T	0.820	1.00
13_R	94_D	0.820	1.00
101_I	110_L	0.814	1.00
53_I	118_N	0.812	1.00
74_S	77_V	0.790	1.00
97_E	100_K	0.788	1.00
32_Q	76_E	0.783	1.00
37_L	40_E	0.782	1.00
28_N	78_R	0.778	1.00
88_I	117_G	0.771	1.00
102_M	110_L	0.770	1.00
103_A	130_K	0.753	1.00
93_I	98_A	0.745	1.00
68_A	71_L	0.744	1.00
61_R	108_R	0.741	1.00
47_V	119_I	0.714	1.00
108_R	126_T	0.698	1.00
45_S	122_M	0.696	1.00
18_M	121_G	0.695	1.00
14_V	17_F	0.691	1.00
24_Q	49_T	0.687	1.00
37_L	46_V	0.686	1.00
34_V	38_M	0.679	1.00
50_E	53_I	0.674	1.00
44_G	108_R	0.669	1.00
70_S	77_V	0.666	1.00
64_V	108_R	0.658	1.00
30_S	78_R	0.651	1.00
25_V	47_V	0.648	1.00
69_T	74_S	0.648	1.00
19_S	22_V	0.648	1.00
113_K	119_I	0.647	1.00
66_A	72_S	0.647	1.00
53_I	117_G	0.646	1.00
28_N	50_E	0.645	1.00
63_A	66_A	0.642	1.00
66_A	69_T	0.642	1.00
117_G	120_I	0.640	1.00
31_L	58_F	0.639	1.00
102_M	125_I	0.637	1.00
24_Q	52_G	0.636	1.00
80_A	83_M	0.626	1.00
45_S	59_T	0.624	1.00
49_T	52_G	0.611	1.00
96_F	100_K	0.608	1.00
15_K	114_N	0.608	1.00
90_D	113_K	0.604	1.00
109_H	125_I	0.603	1.00
24_Q	48_V	0.603	1.00
44_G	109_H	0.597	1.00
103_A	125_I	0.596	1.00
60_D	126_T	0.594	1.00
113_K	117_G	0.592	1.00
59_T	62_D	0.585	1.00
126_T	130_K	0.580	1.00
13_R	92_D	0.580	1.00
14_V	18_M	0.577	1.00
47_V	54_P	0.575	1.00
57_I	86_L	0.572	1.00
86_L	111_P	0.572	1.00
63_A	68_A	0.568	1.00
64_V	68_A	0.565	1.00
44_G	61_R	0.561	1.00
48_V	52_G	0.553	1.00
39_L	65_K	0.552	1.00
14_V	123_F	0.551	1.00
43_V	124_S	0.549	1.00
101_I	104_A	0.546	1.00
99_L	129_Y	0.545	1.00
71_L	74_S	0.533	1.00
44_G	125_I	0.532	1.00
23_F	46_V	0.531	1.00
36_K	71_L	0.527	1.00
62_D	107_I	0.524	1.00
72_S	75_D	0.524	1.00
18_M	112_V	0.523	1.00
111_P	122_M	0.521	1.00
99_L	128_V	0.517	1.00
29_T	46_V	0.515	1.00
95_V	123_F	0.513	1.00
107_I	110_L	0.512	1.00
14_V	93_I	0.511	1.00
55_K	83_M	0.510	1.00
57_I	109_H	0.509	1.00
126_T	129_Y	0.500	1.00

Legend: The i and j are positions as given in the UniProt sequence. Only predictions with Prob ≥ 0.7 are listed. For all 3L/2 predictions, click on one of the links below.

Sco = ((raw_sco - min_sco)/(avg_sco - min_sco))/2 + 0.5
Prob = P(contact | Sco, seq80/√len)
seq80 = effective number of sequences, after reducing redundancy to 80% identity

Text file of predictions (all 3L/2 predictions)
Generate restraints for ROSETTA Structure Modeling
Upload PDB model overlay contacts on the model

HHsearch Results:

Legend: GREMLIN results (Prob ≥ 0.7) overlaid on top PDB hits. The grey/red filled circles underneath are pdb residue contacts (min distance < 5 Angstroms). The shade of the circles is based on the top 10 (or top 20 if e-value < 1E-20) HHsearch results which uses the overall probability and per-site alignment prob. Inter oligomeric contacts in the pdb are in shades of red.

PDB	Chains	Cov	%	HHΔ
3l2bA	2	0.8872	99.8	0.305	Contact Map
2qrdG	1	1	99.8	0.321	Contact Map
4cooA	2	0.9699	99.8	0.326	Contact Map
3pc3A	2	0.9774	99.8	0.326	Contact Map
2ef7A	3	0.9248	99.8	0.328	Contact Map
1pvmA	2	0.9774	99.8	0.332	Contact Map
3t4nC	1	1	99.8	0.333	Contact Map
2uv4A	2	0.9925	99.8	0.336	Contact Map
2p9mA	2	0.9474	99.8	0.337	Contact Map
3fv6A	2	0.985	99.8	0.338	Contact Map

Sequence Conservation (Image Generated using WebLogo v3)

Legend: Color is used to show Hydrophobicity (Blue: Hydrophilic, Green: Neutral and Black: Hydrophobic). Amount of gaps is represented by width.

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