Q97Z52 - SULSO - GREMLIN Contacts

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Q97Z52 - Glutaconate CoA-transferase, subunit A (GctA)

UniProt:	Q97Z52	Sequences: MEEVFIYIFFVEIINMESKLLSLEEAVEVVKKGDSVTISGISIHRNPMAFIYALVKKGVRDLYFIDREPGFGLEVLLKYGLIRKLRIAMSTLEWFSSIPKHFRKMTEEREVEILEDTCGAFIAGIRAGSFGIPFMPVRGIIGSDLVKIHEREGTWKVVEDPFSGEKVVLVKAINPDVAIIHVNKADEEGNAEILGPLYEDEYKAKAAKKVIITAEEIVPRSYFYGRRPTINGEYVTAVVHAPKGAEPTSMFPLYDADYEKIIEFLEHF	Download Alignment We filter this alignment to remove sites that have many gaps before running GREMLIN. Date: 2015_01
Length:	268 (220)
Sequences:	3540 (1804)
Seq/√Len:	121.6

ECOLI - ATOD YDIF
BACSU - SCOA YODS
HALSA - Q9HHP2
SULSO - Q97Z52

GREMLIN Results:

Legend: The darker and larger the blue dots, the higher coevolution strength.

Residue pairs sorted by coevolution strength:

i	j	Sco	Prob
187_E	219_P	3.415	1.00
138_R	165_E	3.353	1.00
182_V	191_A	3.324	1.00
31_K	34_D	3.043	1.00
161_P	166_K	2.989	1.00
193_I	230_I	2.663	1.00
32_K	60_R	2.657	1.00
184_K	216_E	2.655	1.00
191_A	212_I	2.653	1.00
61_D	83_R	2.588	1.00
101_H	104_K	2.386	1.00
163_S	171_K	2.369	1.00
223_F	228_P	2.365	1.00
37_T	175_P	2.254	1.00
24_E	56_K	2.253	1.00
83_R	112_E	2.250	1.00
104_K	108_E	2.211	1.00
159_E	166_K	2.147	1.00
22_S	25_E	2.106	1.00
30_V	54_L	2.091	1.00
21_L	237_A	2.045	1.00
178_A	207_A	2.026	1.00
84_K	112_E	2.017	1.00
53_A	56_K	2.012	1.00
185_A	214_A	1.987	1.00
80_G	105_M	1.936	1.00
128_G	174_N	1.928	1.00
63_Y	86_R	1.905	1.00
37_T	125_I	1.890	1.00
50_F	179_I	1.841	1.00
174_N	208_K	1.835	1.00
183_N	194_L	1.834	1.00
188_E	220_R	1.808	1.00
52_Y	75_V	1.793	1.00
105_M	110_E	1.771	1.00
185_A	212_I	1.740	1.00
29_V	237_A	1.714	1.00
134_F	169_L	1.688	1.00
187_E	220_R	1.641	1.00
32_K	58_G	1.634	1.00
65_I	173_I	1.619	1.00
37_T	203_K	1.575	1.00
80_G	110_E	1.564	1.00
141_I	166_K	1.560	1.00
33_G	61_D	1.550	1.00
34_D	177_V	1.542	1.00
55_V	81_L	1.524	1.00
54_L	179_I	1.502	1.00
186_D	190_N	1.486	1.00
184_K	192_E	1.477	1.00
224_Y	227_R	1.454	1.00
136_P	160_D	1.447	1.00
63_Y	84_K	1.447	1.00
185_A	217_I	1.425	1.00
25_E	28_E	1.398	1.00
204_A	210_V	1.385	1.00
65_I	175_P	1.379	1.00
144_D	147_K	1.368	1.00
127_A	135_M	1.367	1.00
114_L	124_G	1.345	1.00
38_I	179_I	1.343	1.00
133_P	162_F	1.340	1.00
18_S	187_E	1.330	1.00
76_L	81_L	1.329	1.00
30_V	34_D	1.298	1.00
55_V	78_K	1.293	1.00
27_V	53_A	1.286	1.00
184_K	218_V	1.280	1.00
146_V	159_E	1.277	1.00
150_E	160_D	1.269	1.00
35_S	65_I	1.260	1.00
32_K	59_V	1.241	0.99
219_P	222_Y	1.235	0.99
161_P	164_G	1.233	0.99
46_N	51_I	1.214	0.99
79_Y	110_E	1.214	0.99
209_K	237_A	1.212	0.99
24_E	53_A	1.211	0.99
63_Y	83_R	1.195	0.99
120_A	137_V	1.177	0.99
116_D	124_G	1.175	0.99
84_K	114_L	1.173	0.99
125_I	203_K	1.154	0.99
27_V	30_V	1.152	0.99
20_L	217_I	1.145	0.99
180_I	212_I	1.141	0.99
123_A	126_R	1.141	0.99
38_I	51_I	1.132	0.99
23_L	53_A	1.132	0.99
124_G	172_A	1.129	0.99
77_L	105_M	1.126	0.99
55_V	79_Y	1.124	0.99
182_V	214_A	1.122	0.99
132_I	135_M	1.119	0.99
195_G	226_R	1.112	0.99
53_A	57_K	1.112	0.99
55_V	75_V	1.111	0.99
58_G	81_L	1.110	0.99
49_A	241_A	1.106	0.99
49_A	213_T	1.101	0.99
177_V	209_K	1.094	0.99
211_I	239_V	1.085	0.99
64_F	82_I	1.068	0.98
26_A	211_I	1.065	0.98
26_A	239_V	1.064	0.98
133_P	172_A	1.062	0.98
30_V	177_V	1.056	0.98
31_K	177_V	1.051	0.98
180_I	203_K	1.041	0.98
21_L	27_V	1.041	0.98
185_A	191_A	1.041	0.98
125_I	206_A	1.021	0.98
195_G	215_E	1.020	0.98
217_I	240_H	1.012	0.98
124_G	171_K	1.011	0.98
216_E	240_H	1.010	0.98
205_K	234_Y	1.008	0.98
52_Y	56_K	0.996	0.97
21_L	25_E	0.988	0.97
183_N	215_E	0.981	0.97
49_A	245_A	0.980	0.97
127_A	132_I	0.980	0.97
192_E	227_R	0.974	0.97
69_P	102_F	0.973	0.97
191_A	214_A	0.971	0.97
181_H	241_A	0.967	0.97
179_I	211_I	0.958	0.97
136_P	162_F	0.944	0.96
212_I	230_I	0.943	0.96
180_I	204_A	0.941	0.96
101_H	105_M	0.936	0.96
27_V	57_K	0.936	0.96
187_E	222_Y	0.935	0.96
87_I	90_S	0.933	0.96
34_D	176_D	0.933	0.96
214_A	217_I	0.926	0.96
21_L	29_V	0.924	0.96
211_I	237_A	0.921	0.96
184_K	194_L	0.909	0.96
39_S	200_D	0.909	0.96
146_V	168_V	0.906	0.95
160_D	163_S	0.896	0.95
185_A	238_V	0.894	0.95
30_V	211_I	0.892	0.95
37_T	173_I	0.890	0.95
89_M	92_L	0.887	0.95
203_K	207_A	0.885	0.95
29_V	177_V	0.881	0.95
197_L	226_R	0.873	0.94
106_T	113_I	0.868	0.94
78_K	101_H	0.867	0.94
59_V	81_L	0.867	0.94
29_V	34_D	0.862	0.94
191_A	230_I	0.861	0.94
246_E	249_S	0.859	0.94
197_L	229_T	0.848	0.94
77_L	82_I	0.841	0.93
126_R	130_F	0.836	0.93
134_F	171_K	0.833	0.93
136_P	169_L	0.828	0.93
36_V	179_I	0.820	0.92
49_A	242_P	0.815	0.92
32_K	61_D	0.813	0.92
35_S	175_P	0.811	0.92
125_I	175_P	0.803	0.92
147_K	150_E	0.802	0.92
133_P	167_V	0.800	0.91
159_E	168_V	0.800	0.91
128_G	173_I	0.799	0.91
69_P	85_L	0.797	0.91
141_I	168_V	0.794	0.91
37_T	65_I	0.794	0.91
140_I	168_V	0.784	0.91
134_F	160_D	0.782	0.91
123_A	132_I	0.782	0.91
30_V	179_I	0.771	0.90
193_I	201_E	0.771	0.90
180_I	230_I	0.768	0.90
123_A	135_M	0.765	0.90
210_V	236_T	0.756	0.89
60_R	81_L	0.755	0.89
178_A	203_K	0.754	0.89
76_L	82_I	0.748	0.89
49_A	52_Y	0.747	0.88
162_F	169_L	0.747	0.88
245_A	248_T	0.744	0.88
213_T	241_A	0.744	0.88
54_L	81_L	0.741	0.88
218_V	222_Y	0.739	0.88
162_F	171_K	0.738	0.88
134_F	172_A	0.734	0.88
29_V	209_K	0.730	0.87
195_G	224_Y	0.729	0.87
218_V	221_S	0.725	0.87
118_C	122_I	0.725	0.87
181_H	213_T	0.722	0.87
28_E	57_K	0.713	0.86
54_L	59_V	0.711	0.86
27_V	50_F	0.700	0.85
192_E	223_F	0.700	0.85
204_A	230_I	0.696	0.85
18_S	21_L	0.689	0.84
22_S	26_A	0.687	0.84
125_I	202_Y	0.685	0.84
129_S	205_K	0.682	0.83
65_I	125_I	0.679	0.83
109_R	150_E	0.678	0.83
192_E	228_P	0.676	0.83
226_R	229_T	0.676	0.83
26_A	57_K	0.675	0.83
26_A	30_V	0.674	0.83
27_V	237_A	0.673	0.83
30_V	59_V	0.671	0.82
50_F	239_V	0.664	0.82
50_F	54_L	0.662	0.82
26_A	237_A	0.661	0.82
29_V	211_I	0.660	0.81
160_D	169_L	0.659	0.81
175_P	207_A	0.658	0.81
42_S	92_L	0.656	0.81
88_A	118_C	0.655	0.81
163_S	174_N	0.654	0.81
35_S	63_Y	0.654	0.81
193_I	229_T	0.649	0.80
42_S	68_E	0.647	0.80
68_E	91_T	0.645	0.80
88_A	121_F	0.643	0.80
176_D	208_K	0.642	0.80
85_L	102_F	0.638	0.79
66_D	73_L	0.638	0.79
216_E	222_Y	0.637	0.79
124_G	170_V	0.637	0.79
38_I	66_D	0.635	0.79
20_L	187_E	0.635	0.79
79_Y	108_E	0.635	0.79
183_N	216_E	0.635	0.79
201_E	205_K	0.634	0.79
70_G	234_Y	0.633	0.79
18_S	238_V	0.633	0.79
183_N	192_E	0.627	0.78
90_S	102_F	0.626	0.78
69_P	92_L	0.625	0.78
23_L	241_A	0.624	0.78
45_R	193_I	0.624	0.78
195_G	214_A	0.624	0.78
38_I	47_P	0.621	0.77
181_H	214_A	0.618	0.77
192_E	224_Y	0.617	0.77
124_G	173_I	0.616	0.77
240_H	243_K	0.616	0.77
134_F	162_F	0.613	0.76
67_R	199_E	0.612	0.76
48_M	241_A	0.611	0.76
242_P	245_A	0.610	0.76
188_E	232_G	0.606	0.76
141_I	159_E	0.604	0.75
37_T	207_A	0.604	0.75
138_R	167_V	0.604	0.75
130_F	205_K	0.601	0.75
201_E	230_I	0.601	0.75
47_P	50_F	0.601	0.75
192_E	229_T	0.599	0.75
169_L	172_A	0.597	0.75
67_R	88_A	0.594	0.74
202_Y	205_K	0.593	0.74
184_K	227_R	0.593	0.74
54_L	76_L	0.592	0.74
67_R	118_C	0.590	0.74
31_K	59_V	0.589	0.74
20_L	238_V	0.580	0.72
69_P	72_G	0.578	0.72
128_G	175_P	0.576	0.72
57_K	81_L	0.575	0.72
39_S	198_Y	0.569	0.71
38_I	64_F	0.568	0.71
141_I	146_V	0.567	0.71
128_G	172_A	0.566	0.71
103_R	107_E	0.566	0.71
59_V	62_L	0.564	0.70
105_M	108_E	0.561	0.70
41_I	68_E	0.558	0.70
132_I	136_P	0.558	0.70
247_P	251_F	0.557	0.69
46_N	92_L	0.557	0.69
197_L	201_E	0.556	0.69
43_I	71_F	0.555	0.69
209_K	212_I	0.553	0.69
18_S	188_E	0.552	0.69
74_E	92_L	0.549	0.68
70_G	118_C	0.544	0.68
104_K	107_E	0.544	0.68
103_R	106_T	0.543	0.67
37_T	206_A	0.543	0.67
23_L	49_A	0.542	0.67
43_I	48_M	0.536	0.67
85_L	111_V	0.534	0.66
75_V	78_K	0.532	0.66
86_R	114_L	0.528	0.65
119_G	143_S	0.527	0.65
136_P	141_I	0.527	0.65
243_K	246_E	0.527	0.65
245_A	249_S	0.527	0.65
46_N	215_E	0.526	0.65
45_R	198_Y	0.526	0.65
181_H	215_E	0.524	0.65
146_V	166_K	0.523	0.65
21_L	26_A	0.522	0.64
39_S	199_E	0.521	0.64
64_F	69_P	0.519	0.64
123_A	130_F	0.519	0.64
246_E	251_F	0.519	0.64
235_V	238_V	0.516	0.64
67_R	87_I	0.516	0.64
24_E	28_E	0.515	0.63
90_S	106_T	0.513	0.63
38_I	70_G	0.513	0.63
51_I	70_G	0.512	0.63
77_L	101_H	0.510	0.63
39_S	47_P	0.509	0.63
86_R	173_I	0.508	0.62
178_A	210_V	0.508	0.62
82_I	102_F	0.507	0.62
41_I	67_R	0.506	0.62
212_I	236_T	0.505	0.62
210_V	230_I	0.505	0.62
65_I	86_R	0.502	0.62
213_T	239_V	0.502	0.62
72_G	92_L	0.502	0.62
182_V	210_V	0.500	0.61
177_V	211_I	0.500	0.61

Legend: The i and j are positions as given in the UniProt sequence. Only predictions with Prob ≥ 0.7 are listed. For all 3L/2 predictions, click on one of the links below.

Sco = ((raw_sco - min_sco)/(avg_sco - min_sco))/2 + 0.5
Prob = P(contact | Sco, seq80/√len)
seq80 = effective number of sequences, after reducing redundancy to 80% identity

Text file of predictions (all 3L/2 predictions)
Generate restraints for ROSETTA Structure Modeling
Upload PDB model overlay contacts on the model

HHsearch Results:

Legend: GREMLIN results (Prob ≥ 0.7) overlaid on top PDB hits. The grey/red filled circles underneath are pdb residue contacts (min distance < 5 Angstroms). The shade of the circles is based on the top 10 (or top 20 if e-value < 1E-20) HHsearch results which uses the overall probability and per-site alignment prob. Inter oligomeric contacts in the pdb are in shades of red.

PDB	Chains	Cov	%	HHΔ
1poiA	3	0.9366	100	0.28	Contact Map
4kgbA	2	0.9104	100	0.378	Contact Map
3k6mA	2	0.9142	100	0.388	Contact Map
3cdkA	2	0.8358	100	0.393	Contact Map
3rrlA	2	0.8396	100	0.397	Contact Map
1k6dA	2	0.8022	100	0.401	Contact Map
2ahuA	3	0.944	100	0.403	Contact Map
3qliA	2	0.7873	100	0.602	Contact Map
2hj0A	2	0.7985	100	0.602	Contact Map
1xr4A	2	0.7948	100	0.604	Contact Map

Sequence Conservation (Image Generated using WebLogo v3)

Legend: Color is used to show Hydrophobicity (Blue: Hydrophilic, Green: Neutral and Black: Hydrophobic). Amount of gaps is represented by width.

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