Q97Z47 - SULSO - GREMLIN Contacts

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Q97Z47 - Uncharacterized protein

UniProt:	Q97Z47	Sequences: MTWRCPVCGYENADDSLFCIKCGTKKPEQQVEQPPAPPVEQQASGQQSVEQQPADQNQLSQQSATSEQQPVTEQQAPQQVVVEQPSETAKTEQPQSATTTVSKYYLLFINTPNPAFNKTKLPLDFDIFPSISIGRSPENVIVIPDPEVSRKHAIISFENNELYLEDLNSTNGTYVYDGKVFQPVKGKIKVQHNSIIKLGNNTVVRIVGE	Download Alignment We filter this alignment to remove sites that have many gaps before running GREMLIN. Date: 2015_01
Length:	209 (170)
Sequences:	661 (624)
Seq/√Len:	47.8

SULSO - Q97Z47

GREMLIN Results:

Legend: The darker and larger the blue dots, the higher coevolution strength.

Residue pairs sorted by coevolution strength:

i	j	Sco	Prob
176_Y	194_S	6.157	1.00
89_A	93_Q	3.520	1.00
60_S	66_S	2.729	1.00
165_E	187_K	2.516	1.00
41_Q	46_Q	2.402	1.00
173_T	176_Y	2.369	1.00
148_V	198_L	2.255	1.00
89_A	92_E	2.240	1.00
132_S	139_N	2.124	1.00
139_N	142_V	2.024	1.00
67_E	70_P	1.929	0.99
181_F	184_V	1.814	0.99
140_V	190_V	1.789	0.99
125_F	190_V	1.774	0.99
43_A	47_Q	1.747	0.99
156_S	181_F	1.744	0.98
44_S	47_Q	1.743	0.98
116_F	168_N	1.734	0.98
67_E	73_E	1.696	0.98
137_P	201_N	1.695	0.98
156_S	187_K	1.675	0.98
45_G	48_S	1.604	0.97
43_A	49_V	1.600	0.97
154_I	167_L	1.599	0.97
57_N	83_E	1.561	0.97
51_Q	73_E	1.525	0.96
48_S	51_Q	1.515	0.96
155_I	196_I	1.511	0.96
64_A	67_E	1.503	0.96
150_R	176_Y	1.483	0.96
167_L	203_V	1.480	0.96
44_S	88_T	1.462	0.95
120_K	123_L	1.453	0.95
197_K	200_N	1.448	0.95
52_Q	57_N	1.439	0.95
146_P	170_T	1.425	0.95
59_L	62_Q	1.416	0.95
60_S	63_S	1.410	0.94
54_A	60_S	1.399	0.94
72_T	80_V	1.394	0.94
61_Q	91_T	1.393	0.94
147_E	170_T	1.350	0.93
173_T	196_I	1.330	0.93
136_S	142_V	1.323	0.92
50_E	80_V	1.310	0.92
158_E	163_Y	1.310	0.92
136_S	170_T	1.279	0.91
166_D	169_S	1.262	0.90
40_E	50_E	1.253	0.90
46_Q	51_Q	1.251	0.90
130_S	174_Y	1.250	0.90
81_V	87_E	1.243	0.90
135_R	145_D	1.242	0.90
63_S	66_S	1.235	0.89
90_K	93_Q	1.230	0.89
62_Q	67_E	1.222	0.89
150_R	167_L	1.222	0.89
129_P	148_V	1.221	0.89
54_A	58_Q	1.214	0.89
71_V	83_E	1.198	0.88
139_N	164_L	1.196	0.88
137_P	140_V	1.195	0.88
70_P	91_T	1.193	0.88
43_A	51_Q	1.192	0.88
195_I	205_R	1.168	0.87
71_V	78_Q	1.164	0.86
45_G	74_Q	1.149	0.86
125_F	157_F	1.147	0.86
63_S	69_Q	1.135	0.85
73_E	81_V	1.111	0.84
61_Q	64_A	1.108	0.84
67_E	74_Q	1.107	0.83
154_I	168_N	1.103	0.83
44_S	74_Q	1.099	0.83
52_Q	58_Q	1.091	0.83
39_V	45_G	1.087	0.82
47_Q	52_Q	1.086	0.82
73_E	79_Q	1.086	0.82
85_P	89_A	1.084	0.82
89_A	94_P	1.084	0.82
143_I	187_K	1.081	0.82
149_S	169_S	1.080	0.82
48_S	62_Q	1.077	0.82
90_K	94_P	1.075	0.82
98_T	102_S	1.072	0.81
190_V	193_N	1.053	0.80
88_T	94_P	1.047	0.80
54_A	66_S	1.047	0.80
60_S	65_T	1.044	0.80
38_P	49_V	1.040	0.79
180_V	184_V	1.040	0.79
76_A	85_P	1.039	0.79
63_S	68_Q	1.039	0.79
38_P	43_A	1.035	0.79
53_P	59_L	1.032	0.79
137_P	142_V	1.032	0.79
164_L	188_I	1.016	0.78
46_Q	55_D	1.010	0.77
167_L	201_N	1.008	0.77
145_D	199_G	1.007	0.77
59_L	63_S	1.006	0.77
46_Q	79_Q	1.004	0.77
86_S	89_A	1.002	0.77
156_S	165_E	0.996	0.76
85_P	93_Q	0.993	0.76
146_P	200_N	0.987	0.76
197_K	203_V	0.987	0.76
60_S	87_E	0.985	0.76
129_P	141_I	0.983	0.75
162_L	195_I	0.981	0.75
147_E	202_T	0.974	0.75
63_S	73_E	0.973	0.75
98_T	101_V	0.972	0.75
81_V	88_T	0.970	0.74
147_E	174_Y	0.968	0.74
58_Q	66_S	0.961	0.74
54_A	65_T	0.957	0.73
49_V	52_Q	0.921	0.71
37_P	46_Q	0.903	0.69
82_V	86_S	0.897	0.69
142_V	201_N	0.892	0.68
197_K	202_T	0.889	0.68
141_I	162_L	0.881	0.67
149_S	166_D	0.880	0.67
54_A	59_L	0.866	0.66
45_G	80_V	0.866	0.66
96_S	100_T	0.865	0.66
96_S	101_V	0.858	0.65
59_L	65_T	0.857	0.65
154_I	165_E	0.857	0.65
56_Q	78_Q	0.854	0.65
116_F	123_L	0.853	0.65
46_Q	71_V	0.845	0.64
58_Q	75_Q	0.843	0.64
131_I	155_I	0.843	0.64
141_I	201_N	0.830	0.62
165_E	183_P	0.826	0.62
48_S	82_V	0.820	0.62
55_D	58_Q	0.809	0.60
139_N	183_P	0.807	0.60
132_S	140_V	0.799	0.60
85_P	90_K	0.793	0.59
46_Q	66_S	0.791	0.59
82_V	90_K	0.783	0.58
58_Q	61_Q	0.783	0.58
146_P	203_V	0.781	0.58
117_N	201_N	0.780	0.58
34_P	37_P	0.776	0.57
175_V	189_K	0.771	0.57
142_V	147_E	0.770	0.57
135_R	199_G	0.770	0.57
137_P	184_V	0.767	0.56
38_P	41_Q	0.763	0.56
145_D	201_N	0.761	0.56
140_V	153_A	0.758	0.55
71_V	80_V	0.757	0.55
44_S	60_S	0.754	0.55
63_S	71_V	0.754	0.55
61_Q	71_V	0.753	0.55
143_I	163_Y	0.752	0.55
134_G	152_H	0.750	0.55
40_E	59_L	0.744	0.54
50_E	77_P	0.737	0.53
40_E	81_V	0.732	0.53
147_E	195_I	0.726	0.52
130_S	158_E	0.725	0.52
170_T	197_K	0.725	0.52
57_N	75_Q	0.725	0.52
56_Q	70_P	0.724	0.52
137_P	200_N	0.723	0.52
74_Q	80_V	0.718	0.52
115_A	118_K	0.717	0.51
114_P	167_L	0.717	0.51
135_R	151_K	0.714	0.51
49_V	57_N	0.711	0.51
133_I	180_V	0.709	0.51
147_E	183_P	0.706	0.50
170_T	203_V	0.695	0.49
43_A	52_Q	0.689	0.49
132_S	154_I	0.684	0.48
51_Q	99_T	0.684	0.48
150_R	166_D	0.678	0.48
91_T	94_P	0.677	0.47
71_V	89_A	0.676	0.47
47_Q	84_Q	0.673	0.47
51_Q	62_Q	0.673	0.47
151_K	167_L	0.671	0.47
70_P	84_Q	0.669	0.47
140_V	176_Y	0.666	0.46
44_S	82_V	0.658	0.46
56_Q	81_V	0.654	0.45
77_P	80_V	0.649	0.45
197_K	201_N	0.643	0.44
133_I	201_N	0.638	0.44
81_V	85_P	0.636	0.43
55_D	93_Q	0.635	0.43
143_I	200_N	0.634	0.43
115_A	120_K	0.630	0.43
153_A	202_T	0.628	0.43
72_T	81_V	0.627	0.42
162_L	200_N	0.625	0.42
77_P	85_P	0.624	0.42
44_S	54_A	0.621	0.42
60_S	68_Q	0.621	0.42
195_I	200_N	0.620	0.42
117_N	120_K	0.620	0.42
146_P	198_L	0.611	0.41
58_Q	64_A	0.605	0.40
172_G	199_G	0.605	0.40
133_I	136_S	0.603	0.40
122_P	197_K	0.602	0.40
173_T	202_T	0.598	0.40
176_Y	197_K	0.594	0.39
38_P	44_S	0.587	0.39
108_F	113_N	0.585	0.38
148_V	151_K	0.584	0.38
56_Q	59_L	0.582	0.38
89_A	95_Q	0.582	0.38
68_Q	73_E	0.580	0.38
136_S	165_E	0.580	0.38
142_V	195_I	0.579	0.38
65_T	87_E	0.575	0.37
51_Q	69_Q	0.575	0.37
62_Q	71_V	0.572	0.37
56_Q	77_P	0.567	0.37
50_E	53_P	0.566	0.37
137_P	145_D	0.565	0.37
194_S	200_N	0.564	0.36
195_I	202_T	0.563	0.36
67_E	72_T	0.562	0.36
61_Q	75_Q	0.562	0.36
103_K	110_N	0.561	0.36
57_N	79_Q	0.561	0.36
131_I	157_F	0.557	0.36
73_E	83_E	0.555	0.36
117_N	200_N	0.555	0.36
73_E	95_Q	0.550	0.35
53_P	88_T	0.546	0.35
139_N	151_K	0.540	0.34
147_E	201_N	0.536	0.34
143_I	203_V	0.533	0.34
155_I	201_N	0.532	0.33
88_T	182_Q	0.525	0.33
37_P	62_Q	0.519	0.32
64_A	82_V	0.519	0.32
76_A	79_Q	0.518	0.32
43_A	46_Q	0.516	0.32
147_E	200_N	0.516	0.32
69_Q	86_S	0.516	0.32
62_Q	68_Q	0.508	0.31
146_P	159_N	0.507	0.31
188_I	196_I	0.506	0.31
60_S	93_Q	0.503	0.31
146_P	201_N	0.503	0.31
49_V	75_Q	0.500	0.31

Legend: The i and j are positions as given in the UniProt sequence. Only predictions with Prob ≥ 0.7 are listed. For all 3L/2 predictions, click on one of the links below.

Sco = ((raw_sco - min_sco)/(avg_sco - min_sco))/2 + 0.5
Prob = P(contact | Sco, seq80/√len)
seq80 = effective number of sequences, after reducing redundancy to 80% identity

Text file of predictions (all 3L/2 predictions)
Generate restraints for ROSETTA Structure Modeling
Upload PDB model overlay contacts on the model

HHsearch Results:

Legend: GREMLIN results (Prob ≥ 0.7) overlaid on top PDB hits. The grey/red filled circles underneath are pdb residue contacts (min distance < 5 Angstroms). The shade of the circles is based on the top 10 (or top 20 if e-value < 1E-20) HHsearch results which uses the overall probability and per-site alignment prob. Inter oligomeric contacts in the pdb are in shades of red.

PDB	Chains	Cov	%	HHΔ
2jpeA	1	0.5885	99.9	0.545	Contact Map
2kb3A	1	0.6651	99.9	0.551	Contact Map
2kfuA	1	0.7033	99.9	0.555	Contact Map
1mzkA	1	0.4833	99.9	0.563	Contact Map
3ounA	1	0.4306	99.9	0.564	Contact Map
2xt9B	1	0.4593	99.9	0.564	Contact Map
4h87A	2	0.555	99.9	0.566	Contact Map
1r21A	1	0.4689	99.9	0.566	Contact Map
1uhtA	1	0.5167	99.9	0.567	Contact Map
2ff4A	2	0.8134	99.9	0.572	Contact Map

Sequence Conservation (Image Generated using WebLogo v3)

Legend: Color is used to show Hydrophobicity (Blue: Hydrophilic, Green: Neutral and Black: Hydrophobic). Amount of gaps is represented by width.

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