Q97Z24 - SULSO - GREMLIN Contacts

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Q97Z24 - Acetoin utilization protein

UniProt:	Q97Z24	Sequences: MKVMRLTYQNSLGIVWDQRFTEISFSHPMIRDISKARVRDFIKLAKEKVSFVEIRPEYATKEDLMVVHTRDYIGLLEESSKIPYIGFLDQGDTVHYPGMFEDILLVLGSSFTAIKYSKFLDYVYIPLGGFHHAMPNRAVGFCPINDVAITALKLLEKGERVAIVDVDAHHGNGLQFILYDKPILKINIYAYDGNFFPGTGKIDEIGEGKGRGYNINIPLPLGSTDDIFEKSLEILDLLELYNPSYVLVVAGVDGHKNDQLKSLDLTTNSYNLLGLRIRRIKKTINSSIIAYGGGGYGPMSSLSMVSFLEGLLGRRTSYEPLTSSEDIGKIRRIEKIISRFKTLSNFFS	Download Alignment We filter this alignment to remove sites that have many gaps before running GREMLIN. Date: 2015_01
Length:	348 (293)
Sequences:	5155 (3333)
Seq/√Len:	194.7

BACSU - ACUC
HALSA - Q9HSP7
SULSO - Q97Z24 Q981B8 Q981D8

GREMLIN Results:

Legend: The darker and larger the blue dots, the higher coevolution strength.

Residue pairs sorted by coevolution strength:

i	j	Sco	Prob
61_K	77_E	3.093	1.00
178_L	183_I	3.092	1.00
116_Y	289_I	3.033	1.00
159_E	244_S	2.937	1.00
152_L	155_L	2.916	1.00
233_E	276_R	2.895	1.00
60_T	63_D	2.861	1.00
110_S	291_Y	2.806	1.00
154_L	245_Y	2.752	1.00
152_L	181_K	2.726	1.00
175_Q	204_E	2.632	1.00
162_A	238_L	2.496	1.00
110_S	150_T	2.403	1.00
224_T	227_I	2.387	1.00
66_V	156_E	2.374	1.00
225_D	269_S	2.359	1.00
114_I	154_L	2.301	1.00
67_V	177_I	2.296	1.00
113_A	289_I	2.259	1.00
57_E	63_D	2.243	1.00
186_I	234_I	2.232	1.00
15_V	112_T	2.228	1.00
147_V	247_L	2.218	1.00
272_L	275_L	2.212	1.00
113_A	122_Y	2.208	1.00
115_K	153_K	2.172	1.00
65_M	73_I	2.123	1.00
73_I	144_I	2.118	1.00
135_P	176_F	2.114	1.00
139_V	172_N	2.090	1.00
99_M	143_P	2.072	1.00
76_L	144_I	2.032	1.00
184_L	215_I	1.990	1.00
19_R	105_L	1.966	1.00
70_R	74_G	1.903	1.00
164_V	277_I	1.899	1.00
65_M	70_R	1.894	1.00
168_A	261_K	1.846	1.00
61_K	65_M	1.813	1.00
114_I	150_T	1.799	1.00
182_P	209_K	1.785	1.00
215_I	237_L	1.769	1.00
67_V	152_L	1.751	1.00
61_K	74_G	1.737	1.00
134_M	176_F	1.735	1.00
69_T	135_P	1.721	1.00
254_G	265_L	1.717	1.00
210_G	213_Y	1.677	1.00
265_L	269_S	1.673	1.00
107_L	149_I	1.657	1.00
76_L	143_P	1.644	1.00
148_A	177_I	1.621	1.00
59_A	108_G	1.619	1.00
147_V	291_Y	1.615	1.00
225_D	266_T	1.604	1.00
151_A	247_L	1.581	1.00
290_A	307_F	1.579	1.00
13_G	119_F	1.574	1.00
115_K	157_K	1.557	1.00
103_I	144_I	1.535	1.00
57_E	112_T	1.534	1.00
170_H	175_Q	1.532	1.00
252_V	307_F	1.529	1.00
229_E	272_L	1.513	1.00
39_R	43_K	1.506	1.00
152_L	156_E	1.493	1.00
32_D	36_A	1.488	1.00
223_S	227_I	1.478	1.00
135_P	177_I	1.458	1.00
58_Y	105_L	1.450	1.00
77_E	100_F	1.442	1.00
20_F	109_S	1.428	1.00
205_I	211_R	1.428	1.00
139_V	196_F	1.410	1.00
188_I	232_L	1.405	1.00
238_L	246_V	1.387	1.00
246_V	281_K	1.376	1.00
115_K	158_G	1.368	1.00
256_K	264_D	1.361	1.00
185_K	249_V	1.361	1.00
248_V	277_I	1.358	1.00
155_L	181_K	1.349	1.00
144_I	149_I	1.348	1.00
219_L	231_S	1.341	1.00
61_K	104_L	1.339	1.00
163_I	174_L	1.332	1.00
134_M	137_R	1.331	1.00
147_V	249_V	1.327	1.00
14_I	39_R	1.326	1.00
153_K	157_K	1.316	1.00
17_D	55_R	1.311	1.00
202_I	218_P	1.301	1.00
69_T	136_N	1.292	1.00
238_L	280_I	1.292	1.00
72_Y	138_A	1.290	1.00
256_K	266_T	1.286	1.00
64_L	104_L	1.285	1.00
134_M	172_N	1.280	1.00
123_V	292_G	1.280	1.00
219_L	263_L	1.274	1.00
64_L	149_I	1.260	1.00
168_A	263_L	1.258	1.00
148_A	178_L	1.251	1.00
228_F	273_L	1.251	1.00
276_R	279_R	1.234	1.00
233_E	272_L	1.230	1.00
190_A	262_S	1.224	1.00
255_H	267_T	1.220	1.00
278_R	288_I	1.219	1.00
254_G	270_Y	1.215	1.00
74_G	78_E	1.211	1.00
151_A	163_I	1.203	1.00
29_M	129_G	1.200	1.00
38_V	304_M	1.199	1.00
19_R	101_E	1.197	1.00
266_T	269_S	1.195	1.00
162_A	184_L	1.185	1.00
174_L	249_V	1.179	1.00
100_F	144_I	1.178	1.00
63_D	153_K	1.176	1.00
74_G	77_E	1.160	1.00
166_V	273_L	1.155	1.00
191_Y	194_N	1.154	1.00
19_R	22_E	1.149	1.00
21_T	36_A	1.145	1.00
59_A	111_F	1.133	1.00
63_D	66_V	1.122	1.00
41_F	305_V	1.104	1.00
267_T	302_L	1.099	1.00
151_A	161_V	1.090	1.00
271_N	310_G	1.085	1.00
186_I	217_I	1.083	1.00
63_D	111_F	1.078	1.00
122_Y	278_R	1.076	1.00
40_D	43_K	1.057	1.00
57_E	105_L	1.055	1.00
190_A	195_F	1.053	1.00
64_L	73_I	1.047	1.00
61_K	70_R	1.045	1.00
235_L	276_R	1.044	1.00
163_I	183_I	1.043	1.00
221_L	262_S	1.041	1.00
15_V	109_S	1.037	1.00
15_V	54_I	1.036	1.00
184_L	241_Y	1.034	1.00
111_F	153_K	1.032	1.00
134_M	139_V	1.013	1.00
162_A	246_V	1.013	1.00
112_T	115_K	1.012	1.00
66_V	153_K	1.002	1.00
107_L	146_D	1.002	1.00
281_K	286_S	0.999	1.00
179_Y	214_N	0.998	1.00
13_G	54_I	0.991	1.00
275_L	279_R	0.989	1.00
22_E	98_G	0.987	0.99
164_V	186_I	0.985	0.99
166_V	250_A	0.983	0.99
57_E	115_K	0.974	0.99
58_Y	104_L	0.972	0.99
185_K	214_N	0.965	0.99
274_G	307_F	0.964	0.99
190_A	221_L	0.958	0.99
200_G	216_N	0.948	0.99
61_K	73_I	0.948	0.99
247_L	289_I	0.943	0.99
104_L	108_G	0.940	0.99
275_L	310_G	0.938	0.99
248_V	290_A	0.936	0.99
66_V	152_L	0.928	0.99
79_S	95_H	0.920	0.99
255_H	303_S	0.918	0.99
67_V	149_I	0.917	0.99
127_L	130_F	0.915	0.99
58_Y	101_E	0.915	0.99
171_G	185_K	0.912	0.99
236_D	240_L	0.905	0.99
162_A	186_I	0.898	0.99
228_F	265_L	0.883	0.99
114_I	289_I	0.880	0.99
180_D	209_K	0.880	0.99
160_R	241_Y	0.875	0.99
182_P	213_Y	0.868	0.99
238_L	286_S	0.867	0.99
110_S	126_P	0.866	0.99
162_A	237_L	0.865	0.99
249_V	293_G	0.865	0.99
235_L	280_I	0.864	0.99
59_A	63_D	0.863	0.99
84_Y	87_F	0.861	0.99
150_T	247_L	0.860	0.99
153_K	158_G	0.859	0.99
297_G	300_S	0.851	0.98
77_E	104_L	0.845	0.98
62_E	65_M	0.844	0.98
29_M	127_L	0.844	0.98
246_V	277_I	0.844	0.98
188_I	234_I	0.843	0.98
121_D	278_R	0.841	0.98
237_L	240_L	0.841	0.98
164_V	232_L	0.839	0.98
235_L	239_E	0.832	0.98
166_V	277_I	0.832	0.98
179_Y	206_G	0.830	0.98
41_F	45_A	0.827	0.98
128_G	146_D	0.825	0.98
281_K	287_S	0.818	0.98
246_V	288_I	0.815	0.98
64_L	144_I	0.814	0.98
175_Q	216_N	0.814	0.98
191_Y	195_F	0.812	0.98
184_L	237_L	0.810	0.98
271_N	275_L	0.809	0.98
272_L	276_R	0.809	0.98
166_V	274_G	0.808	0.98
188_I	219_L	0.807	0.98
148_A	174_L	0.807	0.98
181_K	241_Y	0.806	0.98
67_V	135_P	0.804	0.98
76_L	100_F	0.800	0.98
164_V	234_I	0.800	0.98
190_A	261_K	0.795	0.98
175_Q	179_Y	0.793	0.98
114_I	153_K	0.793	0.98
179_Y	210_G	0.791	0.98
191_Y	218_P	0.786	0.97
27_H	141_F	0.783	0.97
110_S	289_I	0.778	0.97
85_I	90_Q	0.777	0.97
114_I	247_L	0.777	0.97
220_P	223_S	0.777	0.97
217_I	231_S	0.776	0.97
69_T	72_Y	0.774	0.97
188_I	228_F	0.772	0.97
246_V	286_S	0.770	0.97
176_F	179_Y	0.770	0.97
17_D	20_F	0.769	0.97
179_Y	204_E	0.768	0.97
40_D	44_L	0.767	0.97
267_T	303_S	0.765	0.97
229_E	233_E	0.764	0.97
163_I	178_L	0.764	0.97
257_N	297_G	0.763	0.97
152_L	178_L	0.756	0.97
274_G	310_G	0.755	0.97
65_M	74_G	0.751	0.97
138_A	143_P	0.750	0.97
247_L	291_Y	0.748	0.97
257_N	300_S	0.745	0.97
300_S	303_S	0.744	0.97
60_T	108_G	0.743	0.96
188_I	231_S	0.743	0.96
67_V	148_A	0.743	0.96
195_F	262_S	0.742	0.96
254_G	263_L	0.741	0.96
48_K	53_E	0.741	0.96
227_I	230_K	0.741	0.96
35_K	125_I	0.740	0.96
41_F	44_L	0.739	0.96
145_N	177_I	0.735	0.96
223_S	228_F	0.735	0.96
305_V	309_E	0.733	0.96
281_K	288_I	0.732	0.96
83_P	86_G	0.731	0.96
67_V	178_L	0.730	0.96
25_F	96_Y	0.728	0.96
276_R	280_I	0.727	0.96
90_Q	93_T	0.724	0.96
252_V	293_G	0.720	0.96
136_N	176_F	0.720	0.96
43_K	53_E	0.719	0.96
43_K	48_K	0.719	0.96
191_Y	201_K	0.718	0.96
59_A	64_L	0.718	0.96
116_Y	122_Y	0.718	0.96
66_V	149_I	0.717	0.96
106_V	127_L	0.716	0.96
64_L	107_L	0.711	0.95
170_H	199_T	0.709	0.95
39_R	53_E	0.707	0.95
86_G	90_Q	0.706	0.95
29_M	34_S	0.706	0.95
41_F	302_L	0.703	0.95
108_G	112_T	0.700	0.95
299_M	302_L	0.700	0.95
113_A	124_Y	0.700	0.95
160_R	244_S	0.699	0.95
87_F	90_Q	0.699	0.95
290_A	312_L	0.699	0.95
248_V	288_I	0.697	0.95
100_F	104_L	0.691	0.95
99_M	103_I	0.688	0.95
56_P	109_S	0.679	0.94
16_W	39_R	0.679	0.94
158_G	244_S	0.678	0.94
151_A	174_L	0.677	0.94
21_T	35_K	0.677	0.94
20_F	35_K	0.673	0.94
38_V	42_I	0.673	0.94
222_G	264_D	0.669	0.94
237_L	241_Y	0.666	0.94
98_G	102_D	0.664	0.94
75_L	79_S	0.664	0.94
128_G	293_G	0.661	0.93
124_Y	291_Y	0.657	0.93
81_K	85_I	0.657	0.93
113_A	123_V	0.655	0.93
42_I	308_L	0.655	0.93
163_I	249_V	0.652	0.93
61_K	100_F	0.651	0.93
15_V	113_A	0.651	0.93
185_K	189_Y	0.649	0.93
129_G	146_D	0.647	0.93
153_K	156_E	0.646	0.93
195_F	221_L	0.645	0.93
83_P	87_F	0.643	0.92
164_V	238_L	0.643	0.92
63_D	108_G	0.643	0.92
29_M	130_F	0.641	0.92
271_N	309_E	0.641	0.92
234_I	277_I	0.637	0.92
200_G	204_E	0.635	0.92
170_H	200_G	0.634	0.92
146_D	293_G	0.634	0.92
174_L	185_K	0.634	0.92
191_Y	220_P	0.632	0.92
103_I	106_V	0.628	0.92
36_A	40_D	0.626	0.91
109_S	124_Y	0.626	0.91
84_Y	88_L	0.625	0.91
24_S	31_R	0.624	0.91
111_F	114_I	0.624	0.91
155_L	183_I	0.623	0.91
66_V	107_L	0.620	0.91
224_T	264_D	0.616	0.91
13_G	120_L	0.613	0.91
248_V	307_F	0.613	0.91
166_V	188_I	0.611	0.90
217_I	234_I	0.611	0.90
37_R	40_D	0.611	0.90
57_E	60_T	0.605	0.90
151_A	183_I	0.605	0.90
61_K	64_L	0.604	0.90
166_V	232_L	0.602	0.90
123_V	128_G	0.599	0.90
255_H	300_S	0.598	0.89
225_D	229_E	0.598	0.89
245_Y	289_I	0.592	0.89
278_R	310_G	0.589	0.89
54_I	112_T	0.589	0.89
220_P	227_I	0.589	0.89
62_E	66_V	0.588	0.89
161_V	245_Y	0.587	0.89
25_F	94_V	0.587	0.89
206_G	211_R	0.586	0.88
118_K	121_D	0.585	0.88
129_G	293_G	0.584	0.88
248_V	274_G	0.584	0.88
134_M	177_I	0.583	0.88
72_Y	134_M	0.583	0.88
219_L	224_T	0.582	0.88
226_D	272_L	0.580	0.88
229_E	269_S	0.580	0.88
223_S	231_S	0.579	0.88
206_G	213_Y	0.579	0.88
114_I	245_Y	0.579	0.88
105_L	109_S	0.579	0.88
45_A	305_V	0.576	0.88
58_Y	108_G	0.576	0.88
274_G	290_A	0.574	0.87
168_A	254_G	0.574	0.87
98_G	101_E	0.574	0.87
91_G	138_A	0.573	0.87
125_I	128_G	0.573	0.87
109_S	112_T	0.572	0.87
168_A	190_A	0.572	0.87
268_N	271_N	0.572	0.87
127_L	293_G	0.571	0.87
103_I	146_D	0.571	0.87
226_D	230_K	0.571	0.87
166_V	248_V	0.570	0.87
206_G	209_K	0.569	0.87
52_V	120_L	0.569	0.87
72_Y	76_L	0.568	0.87
177_I	183_I	0.568	0.87
175_Q	200_G	0.568	0.87
184_L	213_Y	0.568	0.87
130_F	293_G	0.566	0.87
85_I	89_D	0.563	0.86
79_S	87_F	0.563	0.86
188_I	217_I	0.563	0.86
206_G	210_G	0.556	0.86
277_I	288_I	0.549	0.85
38_V	308_L	0.549	0.85
103_I	143_P	0.548	0.85
165_D	169_H	0.542	0.84
160_R	243_P	0.541	0.84
71_D	74_G	0.540	0.84
150_T	291_Y	0.540	0.84
164_V	246_V	0.538	0.84
18_Q	21_T	0.538	0.84
208_G	213_Y	0.538	0.84
13_G	52_V	0.538	0.84
28_P	141_F	0.537	0.84
150_T	289_I	0.535	0.84
179_Y	205_I	0.535	0.84
111_F	115_K	0.534	0.83
29_M	128_G	0.532	0.83
168_A	260_L	0.532	0.83
210_G	214_N	0.532	0.83
194_N	199_T	0.530	0.83
109_S	127_L	0.527	0.83
71_D	75_L	0.526	0.83
170_H	216_N	0.523	0.82
20_F	105_L	0.522	0.82
199_T	204_E	0.522	0.82
124_Y	290_A	0.522	0.82
232_L	273_L	0.520	0.82
76_L	95_H	0.519	0.82
43_K	50_S	0.519	0.82
117_S	121_D	0.518	0.82
14_I	51_F	0.517	0.81
128_G	252_V	0.515	0.81
274_G	278_R	0.515	0.81
110_S	247_L	0.513	0.81
20_F	56_P	0.512	0.81
41_F	301_S	0.510	0.81
39_R	48_K	0.510	0.81
73_I	100_F	0.509	0.80
190_A	194_N	0.508	0.80
75_L	87_F	0.508	0.80
110_S	124_Y	0.507	0.80
59_A	107_L	0.506	0.80
123_V	304_M	0.506	0.80
129_G	249_V	0.504	0.80
301_S	304_M	0.504	0.80
42_I	45_A	0.504	0.80
128_G	249_V	0.504	0.80
304_M	307_F	0.501	0.79
236_D	239_E	0.500	0.79

Legend: The i and j are positions as given in the UniProt sequence. Only predictions with Prob ≥ 0.7 are listed. For all 3L/2 predictions, click on one of the links below.

Sco = ((raw_sco - min_sco)/(avg_sco - min_sco))/2 + 0.5
Prob = P(contact | Sco, seq80/√len)
seq80 = effective number of sequences, after reducing redundancy to 80% identity

Text file of predictions (all 3L/2 predictions)
Generate restraints for ROSETTA Structure Modeling
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HHsearch Results:

Legend: GREMLIN results (Prob ≥ 0.7) overlaid on top PDB hits. The grey/red filled circles underneath are pdb residue contacts (min distance < 5 Angstroms). The shade of the circles is based on the top 10 (or top 20 if e-value < 1E-20) HHsearch results which uses the overall probability and per-site alignment prob. Inter oligomeric contacts in the pdb are in shades of red.

PDB	Chains	Cov	%	HHΔ
2vqmA	1	0.9569	100	0.179	Contact Map
4qa5A	1	0.9626	100	0.182	Contact Map
4bkxB	1	0.9483	100	0.184	Contact Map
4ly1A	2	0.9626	100	0.186	Contact Map
1zz1A	4	0.9511	100	0.186	Contact Map
4a69A	1	0.9626	100	0.198	Contact Map
4bz7A	3	0.9397	100	0.203	Contact Map
3menA	3	0.8534	100	0.206	Contact Map
1c3pA	1	0.9253	100	0.207	Contact Map
4zurA	2	0.8448	100	0.216	Contact Map

Sequence Conservation (Image Generated using WebLogo v3)

Legend: Color is used to show Hydrophobicity (Blue: Hydrophilic, Green: Neutral and Black: Hydrophobic). Amount of gaps is represented by width.

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