Q97Z21 - SULSO - GREMLIN Contacts

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Q97Z21 - Glutaredoxin related protein

UniProt:	Q97Z21	Sequences: MSYDYVIKEYLNAIKKGDITIQQCNGDSLFHEFKNYVNVETLNNCKKPLVKVKRGDRVYYTYYGIPIANELWPFLNSLVRISNNVVNLDEREVELAKQVRGSVKLFVTPDCTKCPITAEFLYQVSQINENVKLEIYDATEYEEERDKYRVLSVPKIIFNDKVEIPGDSLQL	Download Alignment We filter this alignment to remove sites that have many gaps before running GREMLIN. Date: 2015_01
Length:	171 (165)
Sequences:	956 (654)
Seq/√Len:	50.9

ECOLI - AHPF
BACSU - DHNA
SULSO - Q97Z21

GREMLIN Results:

Legend: The darker and larger the blue dots, the higher coevolution strength.

Residue pairs sorted by coevolution strength:

i	j	Sco	Prob
90_E	94_E	3.461	1.00
105_L	133_L	3.406	1.00
107_V	135_I	3.392	1.00
102_S	132_K	3.389	1.00
24_C	41_T	2.796	1.00
164_I	168_S	2.725	1.00
19_I	22_Q	2.609	1.00
104_K	136_Y	2.534	1.00
31_H	39_V	2.444	1.00
143_E	147_K	2.337	1.00
23_Q	65_I	2.193	1.00
155_K	162_V	2.168	1.00
103_V	158_F	2.037	1.00
124_V	131_V	2.035	1.00
64_G	135_I	2.026	1.00
53_K	59_Y	2.015	1.00
30_F	74_F	1.974	1.00
19_I	140_E	1.938	0.99
27_D	50_V	1.925	0.99
100_R	130_N	1.919	0.99
88_L	93_V	1.876	0.99
93_V	97_K	1.854	0.99
9_E	12_N	1.823	0.99
17_G	20_T	1.804	0.99
16_K	54_R	1.791	0.99
8_K	12_N	1.782	0.99
143_E	146_D	1.714	0.99
106_F	144_E	1.693	0.99
24_C	28_S	1.649	0.98
137_D	140_E	1.645	0.98
94_E	98_Q	1.623	0.98
102_S	134_E	1.620	0.98
104_K	148_Y	1.617	0.98
80_R	122_Y	1.614	0.98
58_V	81_I	1.604	0.98
60_Y	125_S	1.569	0.98
88_L	123_Q	1.565	0.97
104_K	160_D	1.558	0.97
113_K	167_D	1.548	0.97
22_Q	65_I	1.545	0.97
94_E	97_K	1.502	0.97
81_I	126_Q	1.500	0.97
86_V	123_Q	1.491	0.97
43_N	47_K	1.481	0.96
86_V	89_D	1.463	0.96
93_V	127_I	1.454	0.96
116_I	120_F	1.453	0.96
6_V	11_L	1.440	0.96
26_G	74_F	1.407	0.95
28_S	39_V	1.401	0.95
65_I	140_E	1.399	0.95
25_N	29_L	1.365	0.94
64_G	107_V	1.326	0.94
27_D	39_V	1.324	0.93
15_K	84_N	1.256	0.92
18_D	21_I	1.238	0.91
53_K	60_Y	1.235	0.91
7_I	11_L	1.216	0.90
121_L	133_L	1.214	0.90
146_D	149_R	1.205	0.90
142_E	146_D	1.202	0.90
46_K	144_E	1.199	0.90
21_I	24_C	1.198	0.89
80_R	85_V	1.191	0.89
76_N	119_E	1.178	0.89
110_D	139_T	1.176	0.89
9_E	13_A	1.161	0.88
67_I	110_D	1.149	0.87
117_T	156_I	1.114	0.86
31_H	37_V	1.099	0.85
80_R	86_V	1.094	0.85
157_I	162_V	1.076	0.84
80_R	126_Q	1.056	0.83
92_E	170_Q	1.051	0.82
44_N	47_K	1.042	0.82
145_R	152_S	1.040	0.82
96_A	124_V	1.031	0.81
136_Y	148_Y	1.031	0.81
28_S	41_T	1.024	0.81
55_G	59_Y	1.022	0.80
63_Y	134_E	1.020	0.80
121_L	158_F	1.012	0.80
28_S	32_E	1.006	0.79
32_E	161_K	0.996	0.79
93_V	123_Q	0.987	0.78
113_K	117_T	0.986	0.78
23_Q	50_V	0.967	0.77
110_D	137_D	0.956	0.76
52_V	135_I	0.955	0.76
106_F	150_V	0.954	0.76
56_D	59_Y	0.937	0.74
12_N	15_K	0.927	0.74
88_L	92_E	0.927	0.74
24_C	39_V	0.922	0.73
156_I	164_I	0.916	0.73
58_V	126_Q	0.912	0.72
60_Y	126_Q	0.908	0.72
106_F	157_I	0.908	0.72
29_L	32_E	0.897	0.71
105_L	122_Y	0.891	0.71
16_K	82_S	0.884	0.70
147_K	161_K	0.883	0.70
16_K	98_Q	0.881	0.70
60_Y	77_S	0.880	0.70
88_L	170_Q	0.879	0.69
152_S	155_K	0.875	0.69
90_E	93_V	0.868	0.68
129_E	161_K	0.857	0.68
104_K	159_N	0.854	0.67
101_G	130_N	0.854	0.67
122_Y	133_L	0.853	0.67
11_L	14_I	0.851	0.67
80_R	84_N	0.848	0.67
97_K	127_I	0.844	0.66
10_Y	13_A	0.839	0.66
51_K	61_T	0.837	0.66
123_Q	126_Q	0.829	0.65
121_L	156_I	0.815	0.64
150_V	157_I	0.807	0.63
24_C	47_K	0.805	0.63
15_K	82_S	0.797	0.62
100_R	150_V	0.796	0.62
149_R	165_P	0.785	0.61
13_A	84_N	0.782	0.60
22_Q	25_N	0.781	0.60
107_V	137_D	0.778	0.60
13_A	16_K	0.773	0.59
96_A	131_V	0.773	0.59
24_C	35_N	0.770	0.59
69_N	151_L	0.763	0.58
6_V	13_A	0.763	0.58
69_N	115_P	0.762	0.58
53_K	58_V	0.755	0.58
11_L	15_K	0.752	0.57
20_T	48_P	0.751	0.57
119_E	138_A	0.741	0.56
33_F	84_N	0.739	0.56
18_D	22_Q	0.738	0.56
123_Q	170_Q	0.737	0.56
29_L	33_F	0.735	0.56
106_F	145_R	0.731	0.55
86_V	127_I	0.726	0.55
89_D	92_E	0.714	0.53
7_I	15_K	0.712	0.53
37_V	52_V	0.710	0.53
54_R	58_V	0.709	0.53
70_E	111_C	0.708	0.53
112_T	165_P	0.708	0.53
73_P	118_A	0.704	0.52
79_V	87_N	0.698	0.52
148_Y	157_I	0.694	0.51
116_I	167_D	0.692	0.51
10_Y	15_K	0.691	0.51
110_D	150_V	0.691	0.51
53_K	56_D	0.685	0.50
7_I	13_A	0.684	0.50
65_I	137_D	0.680	0.50
38_N	130_N	0.679	0.50
85_V	99_V	0.672	0.49
12_N	16_K	0.669	0.49
65_I	75_L	0.665	0.48
92_E	96_A	0.664	0.48
30_F	78_L	0.658	0.48
112_T	139_T	0.651	0.47
11_L	16_K	0.648	0.47
74_F	106_F	0.646	0.46
78_L	82_S	0.640	0.46
23_Q	140_E	0.633	0.45
109_P	118_A	0.633	0.45
57_R	132_K	0.630	0.45
9_E	15_K	0.629	0.45
6_V	124_V	0.628	0.45
95_L	124_V	0.624	0.44
13_A	60_Y	0.622	0.44
90_E	161_K	0.622	0.44
18_D	47_K	0.622	0.44
122_Y	135_I	0.620	0.44
9_E	146_D	0.619	0.44
51_K	58_V	0.616	0.43
152_S	168_S	0.615	0.43
18_D	38_N	0.612	0.43
103_V	163_E	0.611	0.43
50_V	54_R	0.611	0.43
35_N	56_D	0.610	0.43
136_Y	139_T	0.608	0.43
107_V	133_L	0.606	0.42
11_L	30_F	0.599	0.42
109_P	135_I	0.597	0.41
62_Y	73_P	0.593	0.41
53_K	57_R	0.593	0.41
104_K	163_E	0.591	0.41
45_C	147_K	0.591	0.41
15_K	36_Y	0.587	0.40
48_P	78_L	0.586	0.40
7_I	10_Y	0.585	0.40
18_D	31_H	0.583	0.40
29_L	125_S	0.582	0.40
48_P	151_L	0.581	0.40
8_K	11_L	0.581	0.40
9_E	14_I	0.581	0.40
59_Y	112_T	0.579	0.40
35_N	38_N	0.574	0.39
89_D	99_V	0.571	0.39
81_I	125_S	0.570	0.39
138_A	145_R	0.570	0.39
106_F	155_K	0.568	0.39
19_I	65_I	0.567	0.38
79_V	122_Y	0.567	0.38
21_I	28_S	0.564	0.38
113_K	138_A	0.564	0.38
81_I	135_I	0.561	0.38
48_P	141_Y	0.560	0.38
20_T	23_Q	0.560	0.38
105_L	135_I	0.556	0.37
113_K	152_S	0.556	0.37
52_V	60_Y	0.555	0.37
7_I	75_L	0.554	0.37
139_T	145_R	0.553	0.37
90_E	124_V	0.552	0.37
66_P	115_P	0.552	0.37
42_L	47_K	0.550	0.37
80_R	112_T	0.545	0.36
86_V	168_S	0.544	0.36
83_N	120_F	0.540	0.36
94_E	170_Q	0.537	0.36
17_G	82_S	0.533	0.35
58_V	107_V	0.533	0.35
8_K	14_I	0.532	0.35
156_I	169_L	0.531	0.35
64_G	130_N	0.525	0.34
114_C	154_P	0.524	0.34
10_Y	14_I	0.524	0.34
74_F	148_Y	0.523	0.34
65_I	109_P	0.521	0.34
28_S	38_N	0.519	0.34
60_Y	135_I	0.519	0.34
18_D	146_D	0.519	0.34
44_N	134_E	0.517	0.34
120_F	167_D	0.516	0.34
99_V	131_V	0.510	0.33
101_G	121_L	0.510	0.33
117_T	122_Y	0.509	0.33
48_P	63_Y	0.507	0.33
69_N	109_P	0.507	0.33
52_V	58_V	0.504	0.33
162_V	165_P	0.501	0.32
33_F	92_E	0.501	0.32
22_Q	74_F	0.500	0.32

Legend: The i and j are positions as given in the UniProt sequence. Only predictions with Prob ≥ 0.7 are listed. For all 3L/2 predictions, click on one of the links below.

Sco = ((raw_sco - min_sco)/(avg_sco - min_sco))/2 + 0.5
Prob = P(contact | Sco, seq80/√len)
seq80 = effective number of sequences, after reducing redundancy to 80% identity

Text file of predictions (all 3L/2 predictions)
Generate restraints for ROSETTA Structure Modeling
Upload PDB model overlay contacts on the model

HHsearch Results:

Legend: GREMLIN results (Prob ≥ 0.7) overlaid on top PDB hits. The grey/red filled circles underneath are pdb residue contacts (min distance < 5 Angstroms). The shade of the circles is based on the top 10 (or top 20 if e-value < 1E-20) HHsearch results which uses the overall probability and per-site alignment prob. Inter oligomeric contacts in the pdb are in shades of red.

PDB	Chains	Cov	%	HHΔ
4mnnA	1	0.9298	100	0.506	Contact Map
1hyuA	2	1	100	0.522	Contact Map
1a8lA	2	1	99.9	0.668	Contact Map
2hlsA	5	0.9825	99.8	0.687	Contact Map
2ywmA	3	1	99.8	0.7	Contact Map
3ctgA	1	0.4854	98.5	0.843	Contact Map
2x8gA	2	0.4678	98.3	0.85	Contact Map
3ipzA	3	0.4678	98.3	0.852	Contact Map
3apoA	1	0.9766	98.2	0.853	Contact Map
4rqrA	1	0.4854	98.2	0.855	Contact Map

Sequence Conservation (Image Generated using WebLogo v3)

Legend: Color is used to show Hydrophobicity (Blue: Hydrophilic, Green: Neutral and Black: Hydrophobic). Amount of gaps is represented by width.

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