Q97Z14 - SULSO - GREMLIN Contacts

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Q97Z14 - Heterodisulfide reductase, subunit A (HdrA)

UniProt:	Q97Z14	Sequences: MASKSVLVIGAGPAGLSATKELANMGVNVVVVEREPFLGGTPKRLKYSLLFPELRPASEVIDPLVKTVQENGNVKIYTESIVDAAKNTSDGFEISIKDKNGKVKVEKANAIIAASGFEHFDSRRKYEYGYGIIPNIYQISDIEGMLHENKLVTTKGTPPKRVAILLCVGSRDATVGNTYCSRVCCAVSIKQAMEIKQRIPDAVVHIYYMDIRTYGLMEDKLYWKSQLDYRVGYIRGRISEFMRGPNDTVIIKGEDTMNLNRALTVPYDMVILANGMELGLGSKQVAKILGLEFEEHGFVKPLDPDRLPVQSTKKGIFLAGAITGPKTISDSITEGYAAAMKAYEYITHGIWEESDFAKKTAEMKVVHH	Download Alignment We filter this alignment to remove sites that have many gaps before running GREMLIN. Date: 2015_01
Length:	368 (299)
Sequences:	25483 (18019)
Seq/√Len:	1042.1

ECOLI - AHPF RCLA HCAD DLDH STHA PRET GLTD GSHR DHNA NORW YGFT TRXB NIRB AEGA YGFK FADH
BACSU - DHNA GLTB DLDH3 DLDH2 DLDH1 YJLD FENR1 YPDA YUTJ FENR2 YUMB TRXB NASB NASD CZCO
HALSA - DLDH Q9HP48 Q9HSN0 P82854 Q9HR27
SULSO - Q97Z14 Q97YT2 Q97WE3 Q97XZ3 Q97VD9 FENR Q97WG1 Q97W27 Q97Z19 Q97V69 Q97VJ3 Q980U1 Q97Y24 Q97VQ4 Q97UP4 Q97U72 Q97ZB4 Q97UV0

GREMLIN Results:

Legend: The darker and larger the blue dots, the higher coevolution strength.

Residue pairs sorted by coevolution strength:

i	j	Sco	Prob
163_A	267_Y	4.026	1.00
34_R	81_I	3.407	1.00
242_M	252_K	3.398	1.00
250_I	264_T	3.235	1.00
161_R	203_V	3.218	1.00
240_E	252_K	3.198	1.00
242_M	250_I	3.086	1.00
5_S	28_N	3.055	1.00
30_V	77_Y	2.890	1.00
252_K	264_T	2.792	1.00
93_E	105_V	2.665	1.00
203_V	232_G	2.662	1.00
302_L	310_Q	2.657	1.00
205_H	234_I	2.650	1.00
5_S	109_N	2.500	1.00
292_E	300_K	2.460	1.00
18_A	112_I	2.457	1.00
163_A	251_I	2.427	1.00
92_F	315_G	2.419	1.00
6_V	22_L	2.401	1.00
161_R	268_D	2.314	1.00
7_L	94_I	2.248	1.00
112_I	342_A	2.244	1.00
120_F	277_E	2.241	1.00
95_S	105_V	2.225	1.00
239_S	254_E	2.211	1.00
28_N	75_K	2.197	1.00
84_A	95_S	2.176	1.00
317_F	345_Y	2.092	1.00
302_L	308_P	2.047	1.00
242_M	264_T	1.983	1.00
112_I	319_A	1.953	1.00
250_I	266_P	1.938	1.00
129_G	240_E	1.901	1.00
93_E	107_K	1.889	1.00
294_E	298_F	1.883	1.00
234_I	263_L	1.880	1.00
161_R	266_P	1.878	1.00
7_L	32_V	1.873	1.00
252_K	262_A	1.863	1.00
5_S	30_V	1.841	1.00
239_S	252_K	1.789	1.00
115_S	322_I	1.789	1.00
292_E	312_T	1.764	1.00
14_A	319_A	1.742	1.00
237_R	254_E	1.702	1.00
4_K	30_V	1.698	1.00
161_R	205_H	1.683	1.00
66_K	69_Q	1.677	1.00
8_V	19_T	1.653	1.00
127_E	131_G	1.640	1.00
7_L	106_E	1.640	1.00
50_L	53_E	1.635	1.00
241_F	248_T	1.625	1.00
133_I	243_R	1.578	1.00
160_K	268_D	1.573	1.00
254_E	262_A	1.564	1.00
243_R	249_V	1.562	1.00
86_K	91_G	1.543	1.00
301_P	323_T	1.542	1.00
96_I	106_E	1.535	1.00
114_A	319_A	1.521	1.00
110_A	315_G	1.520	1.00
161_R	202_A	1.498	1.00
284_Q	288_I	1.487	1.00
205_H	232_G	1.482	1.00
310_Q	314_K	1.455	1.00
7_L	108_A	1.447	1.00
248_T	270_V	1.440	1.00
96_I	99_K	1.436	1.00
56_P	59_E	1.425	1.00
23_A	74_V	1.420	1.00
214_Y	217_M	1.401	1.00
302_L	307_L	1.397	1.00
65_V	69_Q	1.390	1.00
313_K	316_I	1.383	1.00
294_E	300_K	1.383	1.00
32_V	106_E	1.378	1.00
62_D	66_K	1.375	1.00
241_F	270_V	1.374	1.00
139_I	143_E	1.362	1.00
338_A	342_A	1.361	1.00
25_M	343_Y	1.356	1.00
253_G	263_L	1.350	1.00
335_G	339_A	1.334	1.00
253_G	265_V	1.332	1.00
86_K	93_E	1.328	1.00
110_A	317_F	1.321	1.00
110_A	345_Y	1.320	1.00
255_D	261_R	1.315	1.00
110_A	342_A	1.310	1.00
244_G	249_V	1.307	1.00
239_S	262_A	1.298	1.00
163_A	207_Y	1.294	1.00
21_E	340_M	1.285	1.00
339_A	343_Y	1.283	1.00
145_M	148_E	1.272	1.00
143_E	146_L	1.262	1.00
323_T	334_E	1.259	1.00
66_K	70_E	1.258	1.00
7_L	30_V	1.233	1.00
222_Y	226_Q	1.223	1.00
118_E	279_G	1.206	1.00
141_D	144_G	1.204	1.00
144_G	148_E	1.203	1.00
255_D	263_L	1.194	1.00
108_A	111_I	1.193	1.00
86_K	95_S	1.189	1.00
118_E	277_E	1.182	1.00
83_D	97_K	1.182	1.00
145_M	149_N	1.174	1.00
337_A	341_K	1.173	1.00
192_A	195_I	1.173	1.00
9_I	115_S	1.169	1.00
8_V	15_G	1.165	1.00
315_G	345_Y	1.164	1.00
32_V	77_Y	1.160	1.00
5_S	107_K	1.154	1.00
9_I	113_A	1.148	1.00
143_E	147_H	1.134	1.00
299_V	322_I	1.128	1.00
214_Y	218_E	1.123	1.00
301_P	318_L	1.123	1.00
30_V	75_K	1.120	1.00
11_A	33_E	1.118	1.00
211_I	214_Y	1.116	1.00
142_I	145_M	1.111	1.00
6_V	112_I	1.102	1.00
140_S	144_G	1.102	1.00
138_Q	141_D	1.100	1.00
166_L	173_A	1.094	1.00
243_R	248_T	1.088	1.00
343_Y	347_T	1.075	1.00
38_L	78_T	1.074	1.00
209_M	237_R	1.070	1.00
219_D	223_W	1.057	1.00
6_V	27_V	1.052	1.00
30_V	106_E	1.040	1.00
11_A	38_L	1.036	1.00
32_V	96_I	1.029	1.00
6_V	110_A	1.023	1.00
284_Q	287_K	1.022	1.00
137_Y	142_I	1.022	1.00
193_M	196_K	1.020	1.00
237_R	256_T	1.019	1.00
144_G	147_H	1.016	1.00
19_T	31_V	1.007	1.00
310_Q	345_Y	1.005	1.00
140_S	143_E	1.000	1.00
165_L	238_I	0.997	1.00
142_I	146_L	0.996	1.00
139_I	144_G	0.984	1.00
82_V	94_I	0.982	1.00
27_V	343_Y	0.979	1.00
160_K	202_A	0.975	1.00
218_E	221_L	0.975	1.00
163_A	265_V	0.973	1.00
18_A	338_A	0.971	1.00
318_L	322_I	0.970	1.00
22_L	342_A	0.968	1.00
14_A	331_S	0.966	1.00
257_M	261_R	0.960	1.00
89_S	316_I	0.960	1.00
32_V	108_A	0.958	1.00
299_V	318_L	0.952	1.00
89_S	313_K	0.943	1.00
318_L	323_T	0.939	1.00
137_Y	140_S	0.933	1.00
309_V	337_A	0.933	1.00
138_Q	142_I	0.931	1.00
311_S	318_L	0.930	1.00
59_E	62_D	0.924	1.00
77_Y	80_S	0.914	1.00
4_K	110_A	0.910	1.00
141_D	145_M	0.909	1.00
64_L	67_T	0.908	1.00
146_L	149_N	0.907	1.00
81_I	97_K	0.904	1.00
317_F	341_K	0.903	1.00
31_V	74_V	0.900	1.00
84_A	288_I	0.900	1.00
30_V	108_A	0.899	1.00
139_I	145_M	0.898	1.00
267_Y	270_V	0.894	1.00
194_E	197_Q	0.891	1.00
218_E	225_S	0.890	1.00
137_Y	143_E	0.889	1.00
4_K	75_K	0.886	1.00
112_I	338_A	0.885	1.00
18_A	335_G	0.885	1.00
4_K	7_L	0.880	1.00
195_I	198_R	0.876	1.00
139_I	142_I	0.876	1.00
319_A	338_A	0.872	1.00
212_R	226_Q	0.861	1.00
138_Q	144_G	0.861	1.00
113_A	322_I	0.861	1.00
137_Y	145_M	0.858	1.00
221_L	225_S	0.858	1.00
25_M	340_M	0.855	1.00
19_T	74_V	0.851	1.00
36_P	79_E	0.849	1.00
110_A	346_I	0.845	1.00
310_Q	315_G	0.843	1.00
137_Y	269_M	0.837	1.00
204_V	207_Y	0.829	1.00
333_T	337_A	0.829	1.00
291_L	299_V	0.828	1.00
6_V	342_A	0.828	1.00
196_K	199_I	0.827	1.00
38_L	65_V	0.825	1.00
220_K	224_K	0.825	1.00
222_Y	225_S	0.823	1.00
309_V	323_T	0.814	1.00
301_P	309_V	0.813	1.00
22_L	27_V	0.810	1.00
331_S	335_G	0.807	1.00
165_L	270_V	0.805	1.00
141_D	146_L	0.805	1.00
201_D	205_H	0.803	1.00
215_G	218_E	0.803	1.00
253_G	256_T	0.802	1.00
77_Y	106_E	0.799	1.00
155_K	158_P	0.799	1.00
206_I	209_M	0.796	1.00
205_H	208_Y	0.796	1.00
121_D	131_G	0.795	1.00
192_A	196_K	0.789	1.00
143_E	148_E	0.787	1.00
167_C	208_Y	0.787	1.00
223_W	226_Q	0.783	1.00
92_F	313_K	0.782	1.00
21_E	336_Y	0.781	1.00
214_Y	219_D	0.779	1.00
142_I	148_E	0.778	1.00
83_D	95_S	0.774	1.00
221_L	226_Q	0.773	1.00
54_L	57_A	0.770	1.00
18_A	319_A	0.770	1.00
140_S	146_L	0.769	1.00
142_I	147_H	0.769	1.00
43_K	62_D	0.762	1.00
128_Y	131_G	0.762	1.00
234_I	257_M	0.762	1.00
22_L	339_A	0.762	1.00
130_Y	240_E	0.757	1.00
140_S	145_M	0.756	1.00
217_M	226_Q	0.756	1.00
139_I	146_L	0.750	1.00
14_A	112_I	0.747	1.00
224_K	228_D	0.746	1.00
162_V	269_M	0.745	1.00
329_S	332_I	0.745	1.00
89_S	92_F	0.742	1.00
22_L	29_V	0.742	1.00
111_I	316_I	0.741	1.00
192_A	199_I	0.737	1.00
207_Y	253_G	0.736	1.00
195_I	199_I	0.734	1.00
79_E	98_D	0.730	1.00
244_G	247_D	0.729	1.00
236_G	256_T	0.728	1.00
23_A	73_N	0.726	1.00
68_V	74_V	0.726	1.00
59_E	63_P	0.721	1.00
211_I	215_G	0.717	1.00
194_E	198_R	0.715	1.00
15_G	114_A	0.711	1.00
341_K	344_E	0.708	1.00
17_S	335_G	0.706	1.00
308_P	311_S	0.706	1.00
105_V	315_G	0.706	1.00
238_I	251_I	0.705	1.00
82_V	96_I	0.704	1.00
67_T	70_E	0.704	1.00
307_L	310_Q	0.702	1.00
79_E	96_I	0.700	1.00
319_A	342_A	0.697	1.00
321_A	331_S	0.696	1.00
150_K	155_K	0.696	1.00
33_E	78_T	0.694	1.00
80_S	96_I	0.694	1.00
128_Y	241_F	0.692	1.00
217_M	220_K	0.691	1.00
143_E	149_N	0.687	1.00
208_Y	235_R	0.685	1.00
165_L	274_N	0.684	1.00
136_I	241_F	0.678	1.00
192_A	197_Q	0.677	1.00
17_S	21_E	0.675	1.00
54_L	60_V	0.674	1.00
213_T	216_L	0.674	1.00
310_Q	341_K	0.669	1.00
54_L	58_S	0.669	1.00
169_G	173_A	0.668	1.00
121_D	138_Q	0.665	1.00
193_M	197_Q	0.665	1.00
219_D	222_Y	0.662	1.00
21_E	25_M	0.661	1.00
203_V	207_Y	0.660	1.00
286_A	299_V	0.658	1.00
9_I	111_I	0.658	1.00
220_K	223_W	0.656	1.00
139_I	148_E	0.656	1.00
201_D	209_M	0.655	1.00
156_G	159_P	0.653	1.00
340_M	344_E	0.653	1.00
4_K	109_N	0.652	1.00
86_K	89_S	0.652	1.00
144_G	149_N	0.652	1.00
52_P	55_R	0.648	1.00
119_H	138_Q	0.648	1.00
136_I	139_I	0.647	1.00
113_A	316_I	0.645	1.00
244_G	250_I	0.644	1.00
201_D	204_V	0.644	1.00
137_Y	141_D	0.643	1.00
216_L	220_K	0.641	1.00
131_G	272_L	0.639	1.00
40_G	43_K	0.639	1.00
16_L	68_V	0.634	1.00
139_I	147_H	0.633	1.00
248_T	266_P	0.632	1.00
8_V	29_V	0.630	1.00
309_V	338_A	0.629	1.00
217_M	221_L	0.628	1.00
293_F	299_V	0.628	1.00
214_Y	226_Q	0.627	1.00
205_H	209_M	0.625	1.00
169_G	218_E	0.624	1.00
142_I	149_N	0.620	1.00
344_E	349_G	0.620	1.00
58_S	62_D	0.620	1.00
40_G	46_K	0.617	1.00
308_P	341_K	0.616	1.00
336_Y	340_M	0.613	1.00
85_A	111_I	0.610	1.00
327_T	330_D	0.608	1.00
42_P	45_L	0.607	1.00
79_E	97_K	0.604	1.00
166_L	172_D	0.604	1.00
41_T	44_R	0.602	1.00
309_V	341_K	0.601	1.00
236_G	257_M	0.600	1.00
207_Y	265_V	0.598	1.00
254_E	257_M	0.597	1.00
211_I	236_G	0.596	1.00
330_D	334_E	0.593	1.00
172_D	225_S	0.593	1.00
215_G	222_Y	0.593	1.00
166_L	169_G	0.593	1.00
86_K	90_D	0.593	1.00
319_A	335_G	0.592	1.00
216_L	219_D	0.590	1.00
208_Y	211_I	0.589	1.00
43_K	46_K	0.589	1.00
58_S	61_I	0.588	1.00
60_V	63_P	0.587	1.00
286_A	289_L	0.583	1.00
326_K	329_S	0.583	1.00
207_Y	210_D	0.582	1.00
32_V	82_V	0.581	1.00
221_L	224_K	0.580	1.00
208_Y	212_R	0.580	1.00
39_G	42_P	0.580	1.00
20_K	24_N	0.580	1.00
81_I	92_F	0.575	1.00
62_D	65_V	0.574	1.00
137_Y	144_G	0.574	1.00
205_H	267_Y	0.574	1.00
168_V	173_A	0.573	1.00
17_S	332_I	0.571	1.00
33_E	76_I	0.571	1.00
8_V	18_A	0.570	1.00
11_A	31_V	0.569	1.00
280_L	322_I	0.569	1.00
290_G	293_F	0.569	1.00
162_V	165_L	0.568	1.00
20_K	72_G	0.567	1.00
142_I	271_I	0.567	1.00
197_Q	200_P	0.566	1.00
57_A	60_V	0.565	1.00
21_E	24_N	0.565	1.00
201_D	208_Y	0.564	1.00
15_G	19_T	0.562	1.00
135_N	139_I	0.560	1.00
57_A	61_I	0.560	1.00
85_A	94_I	0.559	1.00
121_D	132_I	0.559	1.00
135_N	138_Q	0.557	1.00
140_S	148_E	0.557	1.00
164_I	174_T	0.554	1.00
243_R	247_D	0.551	1.00
60_V	64_L	0.550	1.00
223_W	228_D	0.550	1.00
4_K	28_N	0.549	1.00
310_Q	313_K	0.549	1.00
130_Y	133_I	0.548	1.00
205_H	265_V	0.545	1.00
138_Q	143_E	0.543	1.00
136_I	140_S	0.541	1.00
225_S	228_D	0.541	1.00
172_D	206_I	0.540	1.00
5_S	108_A	0.539	1.00
138_Q	145_M	0.539	1.00
170_S	273_A	0.536	1.00
51_F	54_L	0.536	1.00
222_Y	235_R	0.535	1.00
9_I	82_V	0.532	1.00
137_Y	146_L	0.531	1.00
279_G	284_Q	0.531	1.00
159_P	202_A	0.531	1.00
92_F	316_I	0.530	1.00
244_G	248_T	0.529	1.00
204_V	208_Y	0.528	1.00
202_A	205_H	0.527	1.00
169_G	174_T	0.526	1.00
342_A	346_I	0.523	1.00
141_D	148_E	0.522	1.00
164_I	171_R	0.521	1.00
166_L	174_T	0.521	1.00
253_G	257_M	0.520	1.00
166_L	171_R	0.519	1.00
298_F	326_K	0.519	1.00
95_S	98_D	0.517	1.00
56_P	60_V	0.517	1.00
63_P	67_T	0.517	1.00
122_S	131_G	0.517	1.00
219_D	226_Q	0.516	1.00
27_V	342_A	0.516	1.00
193_M	198_R	0.515	1.00
55_R	61_I	0.514	1.00
168_V	171_R	0.514	1.00
195_I	200_P	0.513	1.00
163_A	270_V	0.512	1.00
206_I	210_D	0.510	1.00
55_R	59_E	0.509	1.00
201_D	210_D	0.508	1.00
161_R	265_V	0.507	1.00
80_S	98_D	0.507	1.00
31_V	76_I	0.507	1.00
338_A	341_K	0.506	1.00
91_G	107_K	0.505	1.00
329_S	333_T	0.504	1.00
38_L	76_I	0.503	1.00
170_S	174_T	0.502	1.00
137_Y	148_E	0.501	1.00
171_R	273_A	0.500	1.00

Legend: The i and j are positions as given in the UniProt sequence. Only predictions with Prob ≥ 0.7 are listed. For all 3L/2 predictions, click on one of the links below.

Sco = ((raw_sco - min_sco)/(avg_sco - min_sco))/2 + 0.5
Prob = P(contact | Sco, seq80/√len)
seq80 = effective number of sequences, after reducing redundancy to 80% identity

Text file of predictions (all 3L/2 predictions)
Generate restraints for ROSETTA Structure Modeling
Upload PDB model overlay contacts on the model

HHsearch Results:

Legend: GREMLIN results (Prob ≥ 0.7) overlaid on top PDB hits. The grey/red filled circles underneath are pdb residue contacts (min distance < 5 Angstroms). The shade of the circles is based on the top 10 (or top 20 if e-value < 1E-20) HHsearch results which uses the overall probability and per-site alignment prob. Inter oligomeric contacts in the pdb are in shades of red.

PDB	Chains	Cov	%	HHΔ
1ojtA	2	0.8723	100	0.375	Contact Map
2vdcG	1	0.8424	100	0.376	Contact Map
1mo9A	2	0.8614	100	0.377	Contact Map
3urhA	2	0.8587	100	0.378	Contact Map
3l8kA	3	0.8668	100	0.379	Contact Map
2q0lA	2	0.8071	100	0.38	Contact Map
1dxlA	2	0.8723	100	0.381	Contact Map
1gteA	4	0.875	100	0.382	Contact Map
3f8dA	2	0.8071	100	0.383	Contact Map
1vdcA	2	0.8342	100	0.385	Contact Map

Sequence Conservation (Image Generated using WebLogo v3)

Legend: Color is used to show Hydrophobicity (Blue: Hydrophilic, Green: Neutral and Black: Hydrophobic). Amount of gaps is represented by width.

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