Q97Z11 - SULSO - GREMLIN Contacts

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Q97Z11 - Heterodisulfide reductase, subunit B (HdrB-2)

UniProt:	Q97Z11	Sequences: MTLPTPYGKVAFYPGCALDGLGKSYDVSLKLVAQDLGIPLEKIEDYNCCGALEVKNVNTMAGVLLPARNLALAREMGADAVVSACPGCHYSLSRTQYYLTKYPKLREKTNMYLEKMGTKNYDLKLMLVHAVEYIYNTVGIEAIKTKVRRPLTGLKVAPYYGCLYVRPKSYTLAGYMKMRDDPERPFFMDEILKALGAEVVPFEAKTMCCGGPHVYSDVEVALHLEARILKEAKRNGAEILVTDCPLGHVAIETNMEKIAQKYGEDLRTPLAYFSQLVAFAFGHSPEETLLTANITNPMSILKRYL	Download Alignment We filter this alignment to remove sites that have many gaps before running GREMLIN. Date: 2015_01
Length:	305 (242)
Sequences:	6241 (3872)
Seq/√Len:	248.9

ECOLI - YKGE GLCF GLPC YDIJ
BACSU - GLCF FADF LUTA
HALSA - Q9HHI4 Q9HMZ3 Q9HNS2 Q9HMR2
SULSO - Q97Z11 Q97W77 Q97Z15 Q97VI0 Q97U89 Q97U61 Q7LX43

GREMLIN Results:

Legend: The darker and larger the blue dots, the higher coevolution strength.

Residue pairs sorted by coevolution strength:

i	j	Sco	Prob
155_K	198_E	4.061	1.00
271_A	279_F	3.782	1.00
31_L	278_A	3.668	1.00
9_K	39_P	3.484	1.00
28_S	275_Q	3.454	1.00
155_K	200_V	3.422	1.00
130_A	274_S	3.389	1.00
74_R	108_K	2.816	1.00
58_N	61_A	2.747	1.00
48_C	88_C	2.546	1.00
83_S	89_H	2.484	1.00
128_V	136_N	2.455	1.00
18_L	26_D	2.420	1.00
24_S	275_Q	2.368	1.00
203_E	234_R	2.346	1.00
10_V	133_Y	2.243	1.00
204_A	231_E	2.191	1.00
225_E	254_N	2.182	1.00
160_Y	186_F	2.179	1.00
202_F	232_A	2.159	1.00
9_K	41_E	2.144	1.00
29_L	84_A	2.142	1.00
239_I	271_A	2.132	1.00
135_Y	187_F	2.044	1.00
16_C	48_C	1.974	1.00
29_L	130_A	1.953	1.00
154_L	239_I	1.925	1.00
154_L	238_E	1.920	1.00
157_A	202_F	1.899	1.00
25_Y	275_Q	1.855	1.00
241_V	276_L	1.837	1.00
231_E	234_R	1.827	1.00
156_V	197_A	1.814	1.00
186_F	201_P	1.804	1.00
93_S	132_E	1.802	1.00
38_I	133_Y	1.794	1.00
110_N	114_E	1.791	1.00
71_A	108_K	1.766	1.00
8_G	38_I	1.765	1.00
54_V	91_S	1.709	1.00
12_F	84_A	1.675	1.00
49_C	88_C	1.636	1.00
16_C	88_C	1.632	1.00
131_V	273_F	1.604	1.00
47_N	68_R	1.562	1.00
32_V	277_V	1.534	1.00
230_K	264_E	1.531	1.00
107_E	110_N	1.531	1.00
230_K	234_R	1.524	1.00
32_V	281_F	1.516	1.00
30_K	40_L	1.498	1.00
107_E	111_M	1.488	1.00
156_V	241_V	1.474	1.00
157_A	235_N	1.467	1.00
9_K	79_D	1.458	1.00
225_E	250_A	1.458	1.00
36_L	281_F	1.454	1.00
128_V	132_E	1.435	1.00
204_A	227_R	1.433	1.00
67_A	71_A	1.429	1.00
82_V	133_Y	1.427	1.00
11_A	78_A	1.419	1.00
165_V	182_P	1.374	1.00
111_M	115_K	1.357	1.00
51_A	87_G	1.355	1.00
192_L	195_L	1.353	1.00
68_R	72_L	1.342	1.00
225_E	229_L	1.342	1.00
71_A	74_R	1.341	1.00
63_V	67_A	1.335	1.00
226_A	230_K	1.333	1.00
155_K	238_E	1.316	1.00
132_E	136_N	1.301	1.00
112_Y	127_L	1.297	1.00
194_A	197_A	1.292	1.00
66_P	96_Q	1.276	1.00
111_M	114_E	1.272	1.00
16_C	49_C	1.243	1.00
150_P	195_L	1.230	1.00
271_A	276_L	1.225	1.00
156_V	276_L	1.219	1.00
222_L	254_N	1.217	1.00
128_V	133_Y	1.205	1.00
271_A	275_Q	1.185	1.00
136_N	140_I	1.184	1.00
11_A	76_M	1.175	1.00
153_G	198_E	1.164	1.00
233_K	266_L	1.162	1.00
10_V	38_I	1.160	1.00
28_S	278_A	1.155	1.00
32_V	274_S	1.147	1.00
83_S	92_L	1.144	1.00
209_C	247_G	1.141	1.00
232_A	240_L	1.135	1.00
243_D	273_F	1.135	1.00
31_L	282_G	1.133	1.00
32_V	278_A	1.106	1.00
232_A	268_T	1.104	1.00
27_V	31_L	1.097	1.00
43_I	46_Y	1.090	1.00
10_V	82_V	1.089	1.00
252_E	256_E	1.072	1.00
96_Q	113_L	1.067	1.00
218_V	222_L	1.067	1.00
109_T	113_L	1.060	1.00
229_L	255_M	1.060	1.00
85_C	244_C	1.049	1.00
136_N	184_R	1.042	1.00
89_H	168_K	1.041	1.00
139_G	187_F	1.034	1.00
204_A	207_M	1.031	1.00
132_E	184_R	1.029	1.00
15_G	85_C	1.026	1.00
226_A	264_E	1.023	1.00
51_A	55_K	1.018	1.00
81_V	112_Y	1.008	1.00
188_M	192_L	1.005	1.00
80_A	128_V	1.000	1.00
269_P	279_F	1.000	1.00
14_P	46_Y	0.992	1.00
34_Q	40_L	0.989	1.00
157_A	232_A	0.981	1.00
14_P	42_K	0.972	1.00
211_G	214_V	0.969	1.00
151_L	154_L	0.968	1.00
158_P	185_P	0.967	1.00
35_D	281_F	0.954	1.00
89_H	127_L	0.954	1.00
41_E	78_A	0.954	1.00
156_V	239_I	0.950	1.00
161_G	242_T	0.949	1.00
38_I	137_T	0.941	1.00
66_P	99_L	0.938	1.00
14_P	26_D	0.937	1.00
142_A	145_T	0.936	1.00
41_E	76_M	0.935	1.00
12_F	26_D	0.930	1.00
7_Y	39_P	0.927	1.00
137_T	140_I	0.919	1.00
170_Y	184_R	0.919	1.00
130_A	134_I	0.917	1.00
96_Q	100_T	0.916	1.00
153_G	196_G	0.914	1.00
30_K	34_Q	0.914	1.00
150_P	153_G	0.909	1.00
212_P	216_S	0.909	1.00
137_T	142_A	0.906	1.00
192_L	199_V	0.906	1.00
255_M	266_L	0.904	1.00
134_I	277_V	0.903	1.00
248_H	270_L	0.902	1.00
211_G	215_Y	0.896	1.00
32_V	130_A	0.891	1.00
68_R	71_A	0.888	1.00
195_L	277_V	0.878	1.00
241_V	273_F	0.877	1.00
31_L	35_D	0.875	1.00
165_V	206_T	0.874	1.00
29_L	33_A	0.872	1.00
24_S	27_V	0.866	0.99
255_M	270_L	0.862	0.99
55_K	87_G	0.861	0.99
67_A	102_Y	0.856	0.99
69_N	72_L	0.853	0.99
192_L	197_A	0.851	0.99
133_Y	137_T	0.839	0.99
27_V	30_K	0.824	0.99
110_N	113_L	0.820	0.99
10_V	40_L	0.811	0.99
218_V	253_T	0.809	0.99
74_R	111_M	0.805	0.99
97_Y	100_T	0.804	0.99
155_K	236_G	0.801	0.99
205_K	231_E	0.800	0.99
26_D	30_K	0.799	0.99
192_L	196_G	0.795	0.99
70_L	109_T	0.795	0.99
203_E	231_E	0.794	0.99
81_V	92_L	0.790	0.99
69_N	92_L	0.786	0.99
87_G	246_L	0.785	0.99
80_A	133_Y	0.784	0.99
229_L	254_N	0.784	0.99
242_T	248_H	0.778	0.99
83_S	127_L	0.776	0.99
72_L	75_E	0.772	0.99
186_F	192_L	0.767	0.99
154_L	197_A	0.766	0.99
239_I	269_P	0.765	0.99
240_L	251_I	0.764	0.99
22_G	25_Y	0.763	0.99
240_L	268_T	0.761	0.99
108_K	111_M	0.760	0.99
90_Y	167_P	0.756	0.99
183_E	186_F	0.755	0.99
22_G	245_P	0.755	0.99
230_K	233_K	0.754	0.99
96_Q	99_L	0.750	0.98
11_A	79_D	0.750	0.98
53_E	61_A	0.749	0.98
150_P	196_G	0.748	0.98
90_Y	94_R	0.747	0.98
151_L	239_I	0.747	0.98
233_K	264_E	0.745	0.98
154_L	279_F	0.744	0.98
182_P	206_T	0.743	0.98
60_M	63_V	0.743	0.98
6_P	39_P	0.741	0.98
233_K	237_A	0.740	0.98
114_E	127_L	0.740	0.98
222_L	226_A	0.736	0.98
46_Y	73_A	0.734	0.98
275_Q	278_A	0.733	0.98
53_E	65_L	0.727	0.98
33_A	38_I	0.725	0.98
12_F	29_L	0.725	0.98
164_Y	170_Y	0.723	0.98
213_H	221_A	0.722	0.98
162_C	208_C	0.721	0.98
132_E	170_Y	0.713	0.98
92_L	112_Y	0.712	0.98
97_Y	101_K	0.712	0.98
25_Y	245_P	0.705	0.98
9_K	78_A	0.703	0.98
29_L	274_S	0.702	0.98
228_I	232_A	0.699	0.98
103_P	107_E	0.697	0.98
70_L	74_R	0.697	0.98
145_T	194_A	0.696	0.98
169_S	182_P	0.695	0.98
188_M	191_I	0.692	0.97
34_Q	39_P	0.692	0.97
8_G	137_T	0.688	0.97
183_E	187_F	0.686	0.97
187_F	192_L	0.685	0.97
33_A	130_A	0.685	0.97
229_L	233_K	0.683	0.97
107_E	114_E	0.681	0.97
87_G	163_L	0.679	0.97
151_L	197_A	0.678	0.97
54_V	62_G	0.676	0.97
22_G	249_V	0.674	0.97
223_H	226_A	0.672	0.97
278_A	282_G	0.672	0.97
35_D	278_A	0.671	0.97
238_E	267_R	0.671	0.97
159_Y	228_I	0.670	0.97
13_Y	92_L	0.669	0.97
202_F	231_E	0.669	0.97
25_Y	28_S	0.661	0.97
276_L	280_A	0.661	0.97
93_S	168_K	0.659	0.97
128_V	137_T	0.657	0.97
157_A	199_V	0.657	0.97
11_A	43_I	0.645	0.96
251_I	255_M	0.642	0.96
151_L	280_A	0.642	0.96
30_K	42_K	0.640	0.96
213_H	216_S	0.640	0.96
214_V	217_D	0.638	0.96
212_P	215_Y	0.638	0.96
142_A	146_K	0.632	0.96
166_R	244_C	0.630	0.96
85_C	245_P	0.626	0.95
11_A	41_E	0.625	0.95
13_Y	49_C	0.624	0.95
45_D	75_E	0.621	0.95
154_L	276_L	0.620	0.95
18_L	84_A	0.619	0.95
191_I	194_A	0.618	0.95
163_L	250_A	0.616	0.95
226_A	254_N	0.614	0.95
22_G	248_H	0.614	0.95
151_L	276_L	0.613	0.95
143_I	281_F	0.612	0.95
206_T	228_I	0.612	0.95
33_A	40_L	0.610	0.95
34_Q	38_I	0.609	0.95
211_G	216_S	0.609	0.95
48_C	52_L	0.609	0.95
62_G	91_S	0.608	0.95
64_L	67_A	0.606	0.95
71_A	75_E	0.599	0.94
137_T	141_E	0.598	0.94
160_Y	185_P	0.598	0.94
207_M	227_R	0.598	0.94
45_D	76_M	0.597	0.94
70_L	108_K	0.596	0.94
146_K	151_L	0.596	0.94
64_L	68_R	0.595	0.94
11_A	73_A	0.594	0.94
188_M	194_A	0.592	0.94
52_L	159_Y	0.591	0.94
23_K	27_V	0.591	0.94
154_L	269_P	0.587	0.94
97_Y	110_N	0.585	0.94
62_G	66_P	0.585	0.94
214_V	221_A	0.581	0.93
187_F	193_K	0.580	0.93
135_Y	139_G	0.578	0.93
85_C	88_C	0.576	0.93
200_V	235_N	0.575	0.93
160_Y	201_P	0.575	0.93
164_Y	243_D	0.574	0.93
8_G	39_P	0.570	0.93
158_P	199_V	0.568	0.93
202_F	235_N	0.567	0.92
255_M	268_T	0.566	0.92
129_H	164_Y	0.563	0.92
98_Y	101_K	0.563	0.92
99_L	109_T	0.563	0.92
160_Y	184_R	0.562	0.92
194_A	280_A	0.560	0.92
131_V	243_D	0.559	0.92
219_E	222_L	0.557	0.92
31_L	34_Q	0.556	0.92
231_E	235_N	0.555	0.92
18_L	25_Y	0.555	0.92
141_E	144_K	0.554	0.92
80_A	136_N	0.549	0.91
151_L	271_A	0.549	0.91
65_L	68_R	0.547	0.91
42_K	46_Y	0.547	0.91
25_Y	248_H	0.544	0.91
170_Y	185_P	0.539	0.90
8_G	79_D	0.539	0.90
89_H	129_H	0.532	0.90
11_A	14_P	0.532	0.90
278_A	281_F	0.531	0.90
12_F	18_L	0.530	0.90
90_Y	163_L	0.529	0.90
240_L	255_M	0.528	0.90
191_I	197_A	0.527	0.89
77_G	115_K	0.526	0.89
16_C	85_C	0.526	0.89
54_V	59_T	0.526	0.89
81_V	127_L	0.525	0.89
161_G	244_C	0.524	0.89
199_V	202_F	0.524	0.89
184_R	187_F	0.524	0.89
112_Y	115_K	0.523	0.89
233_K	267_R	0.522	0.89
219_E	223_H	0.521	0.89
35_D	144_K	0.520	0.89
95_T	100_T	0.516	0.88
14_P	19_D	0.515	0.88
86_P	161_G	0.512	0.88
55_K	224_L	0.512	0.88
87_G	244_C	0.512	0.88
143_I	146_K	0.511	0.88
201_P	235_N	0.510	0.88
62_G	99_L	0.510	0.88
52_L	55_K	0.508	0.88
162_C	247_G	0.508	0.88
113_L	127_L	0.506	0.88
229_L	232_A	0.505	0.87
162_C	209_C	0.505	0.87
229_L	251_I	0.504	0.87
59_T	63_V	0.502	0.87
21_L	249_V	0.502	0.87
15_G	18_L	0.502	0.87
160_Y	165_V	0.501	0.87
108_K	115_K	0.500	0.87

Legend: The i and j are positions as given in the UniProt sequence. Only predictions with Prob ≥ 0.7 are listed. For all 3L/2 predictions, click on one of the links below.

Sco = ((raw_sco - min_sco)/(avg_sco - min_sco))/2 + 0.5
Prob = P(contact | Sco, seq80/√len)
seq80 = effective number of sequences, after reducing redundancy to 80% identity

Text file of predictions (all 3L/2 predictions)
Generate restraints for ROSETTA Structure Modeling
Upload PDB model overlay contacts on the model

HHsearch Results:

Legend: GREMLIN results (Prob ≥ 0.7) overlaid on top PDB hits. The grey/red filled circles underneath are pdb residue contacts (min distance < 5 Angstroms). The shade of the circles is based on the top 10 (or top 20 if e-value < 1E-20) HHsearch results which uses the overall probability and per-site alignment prob. Inter oligomeric contacts in the pdb are in shades of red.

PDB	Chains	Cov	%	HHΔ
3kwlA	1	0.8721	100	0.322	Contact Map
3cf4A	2	0.7148	100	0.587	Contact Map
3c8yA	1	0.8459	98.5	0.862	Contact Map
2jfzA	2	0.4033	89.8	0.929	Contact Map
3outA	5	0.4098	89.7	0.929	Contact Map
2gzmA	3	0.4131	89.5	0.93	Contact Map
1b73A	2	0.4033	88.1	0.932	Contact Map
3s81A	2	0.7311	88	0.932	Contact Map
3istA	2	0.4197	84.5	0.935	Contact Map
2eq5A	2	0.4164	84	0.935	Contact Map

Sequence Conservation (Image Generated using WebLogo v3)

Legend: Color is used to show Hydrophobicity (Blue: Hydrophilic, Green: Neutral and Black: Hydrophobic). Amount of gaps is represented by width.

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