Q97Z04 - SULSO - GREMLIN Contacts

Home
GREMLIN
- Submit - Monomer
- Submit - Complex
Contacts
Metagenomics
- Contacts
- Structures
Structures
- List
Old Projects
- Complexes (2014)
- PFAM (2013)

Q97Z04 - Uncharacterized protein

UniProt:	Q97Z04	Sequences: MLSEFLNLIVMQLKMIRAYLPVFLFFSILFPIGFMLVFGYISIRSLTPFIVAGTITFYVSIGVLTSVAQSLAFERNAGRFSLMIATGIPREFYAISIALSNGIATLIMIPIILVLGSYLLHVEIKSIPFLLIALVSSLFMASMLGMALGLGIRNIYAVNQYSTIISFVLSFFAPVYFPVAFIPLPFRYLTYIEPTTYVSQALYYAFIGNPLSLLWSLGIIIFGFIFVILSRYVIRRQ	Download Alignment We filter this alignment to remove sites that have many gaps before running GREMLIN. Date: 2015_01
Length:	237 (228)
Sequences:	22790 (16151)
Seq/√Len:	1069.6

ECOLI - YADH YBHR YHHJ YBHS
BACSU - YVFS TAGG YFIN YFIM NATB YHAP
HALSA - Q9HRJ5 Q9HMU9
SULSO - Q97Z04 Q97U55 Q97WP5 Q97VH7 Q7LY08 Q97W41

GREMLIN Results:

Legend: The darker and larger the blue dots, the higher coevolution strength.

Residue pairs sorted by coevolution strength:

i	j	Sco	Prob
133_A	201_A	5.351	1.00
10_V	14_K	4.096	1.00
9_I	103_I	3.418	1.00
137_S	198_V	3.262	1.00
8_L	96_S	3.119	1.00
147_A	229_L	3.086	1.00
12_Q	97_I	2.974	1.00
89_P	92_F	2.784	1.00
6_L	10_V	2.744	1.00
110_P	131_L	2.714	1.00
5_F	99_L	2.604	1.00
9_I	99_L	2.544	1.00
184_L	188_Y	2.406	1.00
139_F	223_G	2.216	1.00
228_I	232_Y	2.140	1.00
140_M	223_G	2.101	1.00
45_S	48_P	2.085	1.00
187_R	191_Y	2.076	1.00
14_K	17_R	2.067	1.00
5_F	9_I	2.002	1.00
218_G	221_I	1.893	1.00
154_N	157_A	1.855	1.00
215_W	218_G	1.853	1.00
74_E	97_I	1.839	1.00
184_L	187_R	1.824	1.00
5_F	92_F	1.822	1.00
185_P	188_Y	1.819	1.00
190_T	196_T	1.810	1.00
136_S	220_I	1.775	1.00
140_M	226_F	1.771	1.00
222_F	226_F	1.769	1.00
114_V	118_Y	1.754	1.00
218_G	222_F	1.732	1.00
17_R	21_P	1.716	1.00
147_A	226_F	1.698	1.00
147_A	233_V	1.677	1.00
191_Y	197_Y	1.665	1.00
197_Y	216_S	1.646	1.00
137_S	141_A	1.630	1.00
129_F	205_A	1.617	1.00
179_V	190_T	1.606	1.00
223_G	227_V	1.594	1.00
221_I	225_I	1.570	1.00
106_L	135_V	1.556	1.00
115_L	119_L	1.543	1.00
128_P	132_I	1.534	1.00
188_Y	192_I	1.529	1.00
175_V	199_S	1.500	1.00
11_M	74_E	1.496	1.00
133_A	205_A	1.495	1.00
152_I	161_Y	1.486	1.00
200_Q	216_S	1.475	1.00
143_M	223_G	1.432	1.00
5_F	95_I	1.432	1.00
143_M	227_V	1.420	1.00
46_L	49_F	1.409	1.00
148_L	152_I	1.405	1.00
197_Y	218_G	1.388	1.00
5_F	96_S	1.375	1.00
9_I	96_S	1.316	1.00
102_G	135_V	1.294	1.00
136_S	223_G	1.294	1.00
91_E	95_I	1.282	1.00
105_T	138_L	1.280	1.00
188_Y	191_Y	1.280	1.00
14_K	18_A	1.279	1.00
13_L	17_R	1.265	1.00
136_S	217_L	1.260	1.00
6_L	9_I	1.256	1.00
133_A	217_L	1.248	1.00
225_I	229_L	1.239	1.00
129_F	132_I	1.235	1.00
197_Y	201_A	1.231	1.00
102_G	139_F	1.222	1.00
223_G	226_F	1.217	1.00
140_M	219_I	1.206	1.00
200_Q	204_Y	1.206	1.00
13_L	100_S	1.204	1.00
191_Y	196_T	1.200	1.00
36_L	40_Y	1.197	1.00
217_L	220_I	1.180	1.00
150_L	233_V	1.168	1.00
96_S	100_S	1.168	1.00
68_A	158_V	1.157	1.00
185_P	189_L	1.150	1.00
169_L	193_E	1.148	1.00
134_L	198_V	1.131	1.00
73_F	76_N	1.126	1.00
220_I	223_G	1.123	1.00
140_M	222_F	1.121	1.00
226_F	230_S	1.120	1.00
225_I	228_I	1.115	1.00
82_L	88_I	1.114	1.00
193_E	196_T	1.110	1.00
182_I	187_R	1.104	1.00
220_I	224_F	1.099	1.00
74_E	79_R	1.099	1.00
114_V	117_S	1.097	1.00
78_G	81_S	1.077	1.00
83_M	87_G	1.073	1.00
20_L	23_F	1.072	1.00
229_L	233_V	1.065	1.00
7_N	10_V	1.061	1.00
76_N	155_I	1.058	1.00
72_A	76_N	1.054	1.00
48_P	51_V	1.053	1.00
197_Y	200_Q	1.051	1.00
79_R	82_L	1.044	1.00
82_L	87_G	1.037	1.00
138_L	142_S	1.037	1.00
179_V	196_T	1.029	1.00
56_T	195_T	1.020	1.00
143_M	226_F	1.016	1.00
46_L	50_I	1.012	1.00
179_V	187_R	1.009	1.00
34_F	38_F	1.007	1.00
52_A	57_F	1.003	1.00
51_V	55_I	0.997	1.00
151_G	233_V	0.988	1.00
25_F	29_L	0.987	1.00
209_N	213_L	0.985	1.00
152_I	157_A	0.984	1.00
164_I	168_V	0.978	1.00
30_F	34_F	0.964	1.00
13_L	103_I	0.963	1.00
144_L	165_I	0.961	1.00
52_A	55_I	0.953	1.00
9_I	100_S	0.952	1.00
121_H	124_I	0.950	1.00
196_T	200_Q	0.945	1.00
12_Q	15_M	0.942	1.00
132_I	136_S	0.937	1.00
12_Q	100_S	0.935	1.00
147_A	230_S	0.934	1.00
153_R	157_A	0.932	1.00
183_P	187_R	0.912	1.00
73_F	77_A	0.911	1.00
36_L	39_G	0.910	1.00
94_A	231_R	0.909	1.00
94_A	230_S	0.908	1.00
199_S	203_Y	0.907	1.00
144_L	226_F	0.899	1.00
53_G	66_S	0.890	1.00
113_L	130_L	0.884	1.00
128_P	131_L	0.883	1.00
47_T	51_V	0.882	1.00
51_V	54_T	0.881	1.00
92_F	96_S	0.879	1.00
83_M	88_I	0.876	1.00
134_L	202_L	0.874	1.00
82_L	86_T	0.870	1.00
9_I	13_L	0.863	1.00
216_S	219_I	0.862	1.00
98_A	143_M	0.856	1.00
91_E	231_R	0.854	1.00
219_I	223_G	0.854	1.00
127_I	131_L	0.850	1.00
204_Y	210_P	0.849	1.00
79_R	83_M	0.848	1.00
12_Q	101_N	0.847	1.00
212_S	215_W	0.846	1.00
229_L	232_Y	0.843	1.00
130_L	202_L	0.838	1.00
198_V	201_A	0.834	1.00
208_G	211_L	0.833	1.00
163_T	167_F	0.833	1.00
32_I	36_L	0.828	1.00
37_V	40_Y	0.828	1.00
143_M	230_S	0.827	1.00
207_I	210_P	0.823	1.00
218_G	226_F	0.820	1.00
179_V	191_Y	0.817	1.00
39_G	120_L	0.817	1.00
97_I	101_N	0.816	1.00
166_S	170_S	0.812	1.00
35_M	38_F	0.809	1.00
145_G	149_G	0.809	1.00
16_I	27_S	0.805	1.00
129_F	213_L	0.802	1.00
72_A	75_R	0.799	1.00
115_L	118_Y	0.795	1.00
37_V	41_I	0.789	1.00
11_M	15_M	0.779	1.00
109_I	134_L	0.777	1.00
35_M	39_G	0.774	1.00
62_G	66_S	0.773	1.00
218_G	225_I	0.767	1.00
31_P	34_F	0.764	1.00
88_I	93_Y	0.762	1.00
200_Q	212_S	0.762	1.00
106_L	110_P	0.761	1.00
55_I	58_Y	0.760	1.00
146_M	150_L	0.753	1.00
227_V	231_R	0.746	1.00
132_I	217_L	0.743	1.00
156_Y	160_Q	0.737	1.00
44_R	48_P	0.736	1.00
83_M	86_T	0.733	1.00
103_I	107_I	0.724	1.00
11_M	82_L	0.723	1.00
146_M	149_G	0.723	1.00
75_R	82_L	0.722	1.00
159_N	163_T	0.720	1.00
177_F	181_F	0.719	1.00
224_F	227_V	0.719	1.00
54_T	57_F	0.718	1.00
42_S	45_S	0.708	1.00
221_I	224_F	0.705	1.00
45_S	49_F	0.699	1.00
69_Q	72_A	0.693	1.00
40_Y	119_L	0.692	1.00
197_Y	222_F	0.691	1.00
32_I	115_L	0.688	1.00
29_L	32_I	0.688	1.00
198_V	219_I	0.688	1.00
49_F	55_I	0.686	1.00
111_I	114_V	0.686	1.00
99_L	103_I	0.684	1.00
26_F	30_F	0.684	1.00
204_Y	208_G	0.682	1.00
48_P	52_A	0.677	1.00
98_A	142_S	0.673	1.00
35_M	112_I	0.673	1.00
113_L	134_L	0.672	1.00
224_F	228_I	0.672	1.00
101_N	105_T	0.671	1.00
75_R	153_R	0.669	1.00
170_S	173_A	0.667	1.00
213_L	217_L	0.665	1.00
74_E	78_G	0.662	1.00
187_R	190_T	0.661	1.00
209_N	214_L	0.661	1.00
207_I	211_L	0.661	1.00
157_A	160_Q	0.659	1.00
109_I	135_V	0.659	1.00
31_P	35_M	0.655	1.00
98_A	227_V	0.655	1.00
43_I	46_L	0.654	1.00
68_A	74_E	0.653	1.00
75_R	80_F	0.651	1.00
174_P	196_T	0.650	1.00
212_S	216_S	0.649	1.00
173_A	196_T	0.649	1.00
39_G	119_L	0.645	1.00
72_A	158_V	0.645	1.00
59_V	66_S	0.644	1.00
110_P	114_V	0.642	1.00
53_G	203_Y	0.641	1.00
75_R	78_G	0.641	1.00
160_Q	163_T	0.637	1.00
181_F	184_L	0.637	1.00
56_T	63_V	0.628	1.00
227_V	230_S	0.627	1.00
95_I	99_L	0.627	1.00
84_I	90_R	0.626	1.00
104_A	108_M	0.624	1.00
16_I	104_A	0.623	1.00
47_T	52_A	0.621	1.00
60_S	66_S	0.617	1.00
52_A	56_T	0.617	1.00
81_S	84_I	0.617	1.00
183_P	186_F	0.617	1.00
102_G	142_S	0.617	1.00
48_P	53_G	0.616	1.00
36_L	115_L	0.605	1.00
169_L	195_T	0.602	1.00
34_F	41_I	0.600	1.00
182_I	190_T	0.600	1.00
221_I	228_I	0.600	1.00
34_F	37_V	0.599	1.00
178_P	182_I	0.599	1.00
48_P	55_I	0.598	1.00
56_T	198_V	0.598	1.00
63_V	66_S	0.591	1.00
51_V	116_G	0.590	1.00
79_R	87_G	0.590	1.00
43_I	48_P	0.589	1.00
38_F	41_I	0.589	1.00
53_G	57_F	0.589	1.00
211_L	214_L	0.589	1.00
56_T	137_S	0.588	1.00
222_F	225_I	0.586	1.00
76_N	80_F	0.586	1.00
102_G	106_L	0.583	1.00
110_P	113_L	0.577	1.00
228_I	231_R	0.577	1.00
7_N	14_K	0.576	1.00
35_M	116_G	0.573	1.00
68_A	162_S	0.570	1.00
218_G	223_G	0.570	1.00
182_I	186_F	0.566	1.00
133_A	198_V	0.566	1.00
123_E	126_S	0.566	1.00
68_A	71_L	0.566	1.00
49_F	203_Y	0.565	1.00
210_P	213_L	0.564	1.00
146_M	230_S	0.562	1.00
219_I	222_F	0.561	1.00
131_L	135_V	0.561	1.00
31_P	37_V	0.561	1.00
8_L	92_F	0.560	1.00
163_T	168_V	0.559	1.00
46_L	177_F	0.558	1.00
50_I	54_T	0.553	1.00
29_L	33_G	0.553	1.00
11_M	79_R	0.552	1.00
189_L	193_E	0.551	1.00
53_G	58_Y	0.550	1.00
31_P	38_F	0.548	1.00
192_I	197_Y	0.546	1.00
113_L	117_S	0.546	1.00
56_T	59_V	0.545	1.00
134_L	138_L	0.542	1.00
61_I	66_S	0.538	1.00
80_F	94_A	0.537	1.00
53_G	62_G	0.535	1.00
136_S	219_I	0.534	1.00
82_L	85_A	0.531	1.00
148_L	162_S	0.530	1.00
47_T	50_I	0.530	1.00
80_F	93_Y	0.529	1.00
223_G	230_S	0.528	1.00
48_P	56_T	0.528	1.00
5_F	91_E	0.527	1.00
71_L	75_R	0.527	1.00
220_I	227_V	0.526	1.00
76_N	79_R	0.525	1.00
113_L	131_L	0.523	1.00
200_Q	203_Y	0.522	1.00
72_A	155_I	0.521	1.00
70_S	73_F	0.519	1.00
88_I	92_F	0.519	1.00
94_A	146_M	0.517	1.00
10_V	13_L	0.516	1.00
179_V	182_I	0.513	1.00
194_P	198_V	0.511	1.00
57_F	61_I	0.509	1.00
215_W	221_I	0.503	1.00
66_S	101_N	0.502	1.00
54_T	66_S	0.501	1.00
148_L	165_I	0.500	1.00
52_A	203_Y	0.500	1.00

Legend: The i and j are positions as given in the UniProt sequence. Only predictions with Prob ≥ 0.7 are listed. For all 3L/2 predictions, click on one of the links below.

Sco = ((raw_sco - min_sco)/(avg_sco - min_sco))/2 + 0.5
Prob = P(contact | Sco, seq80/√len)
seq80 = effective number of sequences, after reducing redundancy to 80% identity

Text file of predictions (all 3L/2 predictions)
Generate restraints for ROSETTA Structure Modeling
Upload PDB model overlay contacts on the model

HHsearch Results:

Legend: GREMLIN results (Prob ≥ 0.7) overlaid on top PDB hits. The grey/red filled circles underneath are pdb residue contacts (min distance < 5 Angstroms). The shade of the circles is based on the top 10 (or top 20 if e-value < 1E-20) HHsearch results which uses the overall probability and per-site alignment prob. Inter oligomeric contacts in the pdb are in shades of red.

PDB	Chains	Cov	%	HHΔ
2zxeA	1	0.384	6.4	0.933	Contact Map
3ixzA	1	0.384	5.8	0.935	Contact Map
2mfrA	1	0.1772	4.2	0.939	Contact Map
2a65A	2	0.6371	3.5	0.941	Contact Map
2l9uA	2	0.1308	3.3	0.942	Contact Map
2m20A	2	0.1224	2.5	0.945	Contact Map
1iijA	1	0.1435	2.4	0.946	Contact Map
2rddB	1	0.1139	2	0.948	Contact Map
4xk8K	1	0.0886	1.7	0.95	Contact Map
2kncA	1	0.1519	1.6	0.951	Contact Map

Sequence Conservation (Image Generated using WebLogo v3)

Legend: Color is used to show Hydrophobicity (Blue: Hydrophilic, Green: Neutral and Black: Hydrophobic). Amount of gaps is represented by width.

Page generated in 0.0089 seconds.