Q97Z02 - SULSO - GREMLIN Contacts

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Q97Z02 - Uncharacterized protein

UniProt:	Q97Z02	Sequences: MLIPNVYPLIISRLLQGLSLGGEWGGASTIVIEAYSEHKFRGFITSLLQLSVPIGIILSSLTILVIYNYSVYWPYSFLSITFLSLLSLLLVKDITTQKVTRSETQPLLEAKRHDWKNILKSIGIKVSESANFYIFTSYIFTNSSSISFLSLIVLISISFQLFLNPILWLPK	Download Alignment We filter this alignment to remove sites that have many gaps before running GREMLIN. Date: 2015_01
Length:	171 (160)
Sequences:	24508 (16017)
Seq/√Len:	1266.3

ECOLI - KGTP PROP YHJE XYLE SHIA YJHB ARAE NEPI EMRY YFCJ GALP MDTH YDJE YDJK MDTL YEAN YDFJ YICJ MDTD YNFM YEBQ AMPG HSRA YAAU YHHS
BACSU - YHCA YUSP YNCC IOLT PBUE YFIG YWTG NAIP YOAB YUBD BMR3 YJBB YCNB LMRB ARAE YVMA GLPT MMR
HALSA - Q9HSE5
SULSO - Q97Z02 Q97YW8 Q97WS7 Q97U98 Q97YI4 Q97U43 Q980K3 Q97U99 Q97Y11 Q97VT2 Q97UY7 Q97WR1 Q97VB9 Q97VV2 Q97U80 Q97VC8 Q97Z36 Q97YL8 Q97U76 Q97YY8

GREMLIN Results:

Legend: The darker and larger the blue dots, the higher coevolution strength.

Residue pairs sorted by coevolution strength:

i	j	Sco	Prob
7_Y	11_I	3.437	1.00
71_V	75_Y	3.234	1.00
40_F	43_F	2.682	1.00
23_E	91_V	2.556	1.00
108_L	112_R	2.454	1.00
89_L	93_D	2.419	1.00
36_S	44_I	2.404	1.00
161_L	164_N	2.320	1.00
114_D	117_N	2.278	1.00
106_P	109_E	2.162	1.00
123_G	127_S	2.079	1.00
37_E	40_F	2.021	1.00
160_Q	163_L	1.990	1.00
32_I	45_T	1.965	1.00
61_L	65_V	1.952	1.00
116_K	120_K	1.915	1.00
6_V	10_I	1.903	1.00
30_I	35_Y	1.879	1.00
105_Q	109_E	1.873	1.00
160_Q	164_N	1.872	1.00
115_W	119_L	1.823	1.00
159_F	163_L	1.724	1.00
141_T	144_S	1.723	1.00
151_L	155_I	1.715	1.00
11_I	15_L	1.711	1.00
117_N	120_K	1.693	1.00
153_V	156_S	1.649	1.00
8_P	12_S	1.599	1.00
109_E	112_R	1.599	1.00
154_L	157_I	1.596	1.00
66_I	75_Y	1.560	1.00
156_S	163_L	1.555	1.00
161_L	166_I	1.553	1.00
153_V	157_I	1.548	1.00
75_Y	79_S	1.526	1.00
155_I	158_S	1.514	1.00
88_L	92_K	1.497	1.00
119_L	123_G	1.475	1.00
152_I	156_S	1.463	1.00
43_F	47_L	1.456	1.00
109_E	113_H	1.450	1.00
156_S	164_N	1.448	1.00
71_V	78_L	1.439	1.00
30_I	94_I	1.437	1.00
120_K	124_I	1.425	1.00
132_F	136_T	1.410	1.00
157_I	160_Q	1.408	1.00
125_K	128_E	1.384	1.00
70_S	74_P	1.353	1.00
155_I	160_Q	1.344	1.00
31_V	48_L	1.326	1.00
153_V	159_F	1.316	1.00
163_L	166_I	1.277	1.00
162_F	166_I	1.270	1.00
110_A	118_I	1.246	1.00
37_E	44_I	1.244	1.00
155_I	159_F	1.243	1.00
75_Y	78_L	1.221	1.00
156_S	159_F	1.210	1.00
40_F	44_I	1.201	1.00
161_L	165_P	1.198	1.00
104_T	108_L	1.178	1.00
61_L	64_L	1.161	1.00
108_L	111_K	1.157	1.00
141_T	145_S	1.145	1.00
85_L	89_L	1.136	1.00
156_S	161_L	1.123	1.00
112_R	115_W	1.103	1.00
162_F	165_P	1.080	1.00
7_Y	10_I	1.079	1.00
118_I	122_I	1.077	1.00
98_K	101_R	1.073	1.00
153_V	163_L	1.057	1.00
156_S	160_Q	1.045	1.00
34_A	97_Q	1.042	1.00
91_V	94_I	1.031	1.00
99_V	102_S	1.026	1.00
125_K	129_S	1.023	1.00
24_W	49_Q	1.022	1.00
105_Q	108_L	1.021	1.00
9_L	77_F	0.995	1.00
8_P	11_I	0.994	1.00
122_I	125_K	0.993	1.00
133_Y	137_S	0.991	1.00
153_V	161_L	0.982	1.00
104_T	109_E	0.982	1.00
139_I	143_S	0.971	1.00
62_T	66_I	0.963	1.00
65_V	68_N	0.963	1.00
63_I	76_S	0.963	1.00
51_S	55_G	0.962	1.00
121_S	125_K	0.957	1.00
143_S	147_S	0.953	1.00
81_T	85_L	0.946	1.00
159_F	162_F	0.942	1.00
153_V	160_Q	0.938	1.00
153_V	164_N	0.938	1.00
100_T	103_E	0.934	1.00
62_T	79_S	0.933	1.00
152_I	155_I	0.932	1.00
63_I	66_I	0.916	1.00
151_L	154_L	0.905	1.00
111_K	115_W	0.903	1.00
87_S	91_V	0.903	1.00
57_I	61_L	0.902	1.00
154_L	160_Q	0.900	1.00
158_S	161_L	0.897	1.00
157_I	161_L	0.894	1.00
157_I	163_L	0.893	1.00
52_V	56_I	0.892	1.00
35_Y	95_T	0.876	1.00
152_I	157_I	0.876	1.00
129_S	132_F	0.876	1.00
158_S	162_F	0.875	1.00
132_F	139_I	0.873	1.00
30_I	97_Q	0.869	1.00
52_V	132_F	0.867	1.00
157_I	166_I	0.863	1.00
154_L	158_S	0.848	1.00
156_S	166_I	0.845	1.00
143_S	153_V	0.835	1.00
25_G	29_T	0.834	1.00
49_Q	52_V	0.827	1.00
160_Q	165_P	0.820	1.00
43_F	46_S	0.817	1.00
23_E	27_A	0.814	1.00
157_I	164_N	0.814	1.00
89_L	92_K	0.813	1.00
50_L	54_I	0.808	1.00
124_I	127_S	0.805	1.00
102_S	106_P	0.803	1.00
159_F	164_N	0.798	1.00
140_F	144_S	0.786	1.00
82_F	85_L	0.785	1.00
118_I	121_S	0.785	1.00
153_V	165_P	0.782	1.00
31_V	44_I	0.774	1.00
48_L	52_V	0.773	1.00
152_I	163_L	0.765	1.00
53_P	57_I	0.764	1.00
21_G	36_S	0.759	1.00
62_T	76_S	0.749	1.00
99_V	103_E	0.745	1.00
156_S	165_P	0.733	1.00
158_S	163_L	0.725	1.00
66_I	71_V	0.723	1.00
69_Y	72_Y	0.722	1.00
151_L	156_S	0.722	1.00
72_Y	75_Y	0.718	1.00
47_L	50_L	0.712	1.00
113_H	116_K	0.710	1.00
78_L	81_T	0.703	1.00
64_L	68_N	0.703	1.00
80_I	84_S	0.701	1.00
50_L	53_P	0.701	1.00
128_E	131_N	0.697	1.00
130_A	134_I	0.693	1.00
145_S	148_F	0.688	1.00
116_K	119_L	0.687	1.00
53_P	164_N	0.684	1.00
154_L	163_L	0.682	1.00
155_I	162_F	0.681	1.00
143_S	146_I	0.680	1.00
146_I	149_L	0.680	1.00
152_I	159_F	0.677	1.00
49_Q	53_P	0.675	1.00
107_L	110_A	0.675	1.00
66_I	76_S	0.670	1.00
56_I	136_T	0.669	1.00
109_E	114_D	0.662	1.00
100_T	104_T	0.662	1.00
28_S	48_L	0.662	1.00
18_L	21_G	0.661	1.00
115_W	118_I	0.660	1.00
152_I	160_Q	0.660	1.00
160_Q	166_I	0.656	1.00
64_L	155_I	0.654	1.00
98_K	103_E	0.654	1.00
14_L	18_L	0.652	1.00
154_L	159_F	0.650	1.00
87_S	90_L	0.648	1.00
154_L	165_P	0.647	1.00
86_L	89_L	0.647	1.00
159_F	166_I	0.641	1.00
123_G	126_V	0.636	1.00
134_I	137_S	0.635	1.00
38_H	41_R	0.627	1.00
156_S	162_F	0.619	1.00
152_I	161_L	0.619	1.00
34_A	96_T	0.612	1.00
126_V	129_S	0.609	1.00
157_I	162_F	0.599	1.00
24_W	28_S	0.590	1.00
76_S	79_S	0.590	1.00
18_L	22_G	0.590	1.00
16_Q	77_F	0.588	1.00
121_S	124_I	0.585	1.00
24_W	48_L	0.584	1.00
76_S	80_I	0.584	1.00
135_F	143_S	0.582	1.00
153_V	166_I	0.577	1.00
158_S	166_I	0.575	1.00
151_L	164_N	0.573	1.00
155_I	163_L	0.573	1.00
78_L	82_F	0.568	1.00
39_K	43_F	0.568	1.00
138_Y	141_T	0.567	1.00
104_T	107_L	0.566	1.00
58_L	62_T	0.563	1.00
56_I	59_S	0.561	1.00
49_Q	56_I	0.555	1.00
102_S	105_Q	0.555	1.00
70_S	73_W	0.552	1.00
140_F	143_S	0.551	1.00
63_I	67_Y	0.546	1.00
12_S	15_L	0.544	1.00
64_L	154_L	0.543	1.00
152_I	164_N	0.542	1.00
132_F	137_S	0.539	1.00
111_K	118_I	0.538	1.00
151_L	160_Q	0.535	1.00
139_I	144_S	0.532	1.00
103_E	109_E	0.526	1.00
10_I	14_L	0.524	1.00
49_Q	128_E	0.519	1.00
32_I	41_R	0.518	1.00
12_S	16_Q	0.516	1.00
59_S	63_I	0.515	1.00
61_L	157_I	0.515	1.00
129_S	133_Y	0.513	1.00
60_S	64_L	0.513	1.00
53_P	136_T	0.512	1.00
79_S	82_F	0.512	1.00
20_L	52_V	0.511	1.00
106_P	110_A	0.510	1.00
144_S	150_S	0.509	1.00
57_I	161_L	0.508	1.00
64_L	67_Y	0.507	1.00
117_N	125_K	0.506	1.00
137_S	142_N	0.500	1.00

Legend: The i and j are positions as given in the UniProt sequence. Only predictions with Prob ≥ 0.7 are listed. For all 3L/2 predictions, click on one of the links below.

Sco = ((raw_sco - min_sco)/(avg_sco - min_sco))/2 + 0.5
Prob = P(contact | Sco, seq80/√len)
seq80 = effective number of sequences, after reducing redundancy to 80% identity

Text file of predictions (all 3L/2 predictions)
Generate restraints for ROSETTA Structure Modeling
Upload PDB model overlay contacts on the model

HHsearch Results:

Legend: GREMLIN results (Prob ≥ 0.7) overlaid on top PDB hits. The grey/red filled circles underneath are pdb residue contacts (min distance < 5 Angstroms). The shade of the circles is based on the top 10 (or top 20 if e-value < 1E-20) HHsearch results which uses the overall probability and per-site alignment prob. Inter oligomeric contacts in the pdb are in shades of red.

PDB	Chains	Cov	%	HHΔ
4gc0A	1	0.9942	99.7	0.463	Contact Map
4j05A	3	0.924	99.7	0.473	Contact Map
1pw4A	1	0.9649	99.7	0.476	Contact Map
4pypA	1	0.9883	99.7	0.484	Contact Map
4zw9A	1	0.9883	99.7	0.484	Contact Map
2gfpA	2	0.9766	99.7	0.497	Contact Map
4ldsA	2	0.9883	99.6	0.506	Contact Map
3wdoA	1	0.9649	99.6	0.51	Contact Map
3o7qA	1	0.9825	99.5	0.547	Contact Map
4u4vA	1	0.924	99.4	0.577	Contact Map

Sequence Conservation (Image Generated using WebLogo v3)

Legend: Color is used to show Hydrophobicity (Blue: Hydrophilic, Green: Neutral and Black: Hydrophobic). Amount of gaps is represented by width.

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