Q97YZ3 - SULSO - GREMLIN Contacts

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Q97YZ3 - Acyl-CoA dehydrogenase related protein (Acd-like1)

UniProt:	Q97YZ3	Sequences: MLLDVETNEDLELIKNSFNEFLSREWNKYGSKKHEVSRDKIMEVFGKVKDLGIFQFIRETGLTNALLLNEIIGENLLPGIVAFSSMLGVDYLVSVGVNYVAEVDKAEAIVTPKGISNKNDVDVEEIESPDPSVRVYKIIEGEWRKSDFDFNKVILLASAQIIGHATAVLKETVEYSKNRIAFGKPIGSYQAIKHRIVDDALRIELVRSRYLVNPTSPERIFKHAYKKAFKAILNSIQSHGGIGFTADLDLHLHLKRVILLGKLFQQ	Download Alignment We filter this alignment to remove sites that have many gaps before running GREMLIN. Date: 2015_01
Length:	266 (252)
Sequences:	29908 (17978)
Seq/√Len:	1132.5

ECOLI - CAIA YDIO AIDB
BACSU - ACDC ACDA FADE YDBM ACDB
HALSA - Q9HS75 Q9HRB3 Q9HRI6 Q9HPT2 Q9HMK7 Q9HQF0
SULSO - Q97YZ3 Q97VV8 Q97UW6 Q97V73 Q97U78 Q97WQ8 Q97XW3 Q97YZ6 Q97VU6

GREMLIN Results:

Legend: The darker and larger the blue dots, the higher coevolution strength.

Residue pairs sorted by coevolution strength:

i	j	Sco	Prob
202_R	230_K	3.674	1.00
90_D	144_R	3.516	1.00
25_E	47_K	3.271	1.00
94_S	142_E	2.973	1.00
195_R	234_N	2.874	1.00
61_G	64_N	2.845	1.00
33_K	37_S	2.640	1.00
88_G	147_D	2.606	1.00
19_N	71_I	2.569	1.00
174_E	178_N	2.437	1.00
89_V	144_R	2.311	1.00
20_E	24_R	2.289	1.00
191_A	194_H	2.172	1.00
176_S	238_S	2.171	1.00
166_T	207_R	2.144	1.00
246_A	251_H	2.106	1.00
96_G	139_I	2.014	1.00
8_N	11_L	2.008	1.00
11_L	64_N	1.958	1.00
242_I	248_L	1.940	1.00
134_R	141_G	1.939	1.00
171_E	249_D	1.925	1.00
47_K	50_D	1.917	1.00
184_K	188_S	1.881	1.00
169_L	203_I	1.851	1.00
109_I	128_S	1.835	1.00
212_V	216_S	1.822	1.00
180_I	185_P	1.807	1.00
89_V	92_L	1.800	1.00
185_P	188_S	1.784	1.00
46_G	50_D	1.754	1.00
181_A	189_Y	1.725	1.00
251_H	255_K	1.715	1.00
206_V	224_A	1.691	1.00
166_T	170_K	1.650	1.00
71_I	74_E	1.640	1.00
230_K	234_N	1.619	1.00
13_L	17_S	1.615	1.00
199_D	231_A	1.606	1.00
13_L	16_N	1.599	1.00
11_L	61_G	1.594	1.00
96_G	137_K	1.583	1.00
74_E	170_K	1.573	1.00
12_E	15_K	1.560	1.00
113_K	124_E	1.555	1.00
128_S	133_V	1.553	1.00
167_A	171_E	1.548	1.00
87_L	94_S	1.535	1.00
16_N	20_E	1.514	1.00
176_S	192_I	1.512	1.00
192_I	238_S	1.506	1.00
173_V	177_K	1.492	1.00
171_E	239_H	1.490	1.00
122_D	150_F	1.490	1.00
171_E	174_E	1.477	1.00
22_L	75_N	1.460	1.00
70_E	207_R	1.444	1.00
91_Y	124_E	1.437	1.00
184_K	189_Y	1.425	1.00
88_G	91_Y	1.407	1.00
15_K	71_I	1.401	1.00
104_D	136_Y	1.400	1.00
49_K	54_F	1.398	1.00
199_D	234_N	1.398	1.00
148_F	151_N	1.390	1.00
147_D	150_F	1.386	1.00
233_L	258_I	1.381	1.00
103_V	136_Y	1.369	1.00
204_E	212_V	1.362	1.00
11_L	67_L	1.358	1.00
165_A	203_I	1.337	1.00
9_E	13_L	1.335	1.00
42_M	46_G	1.335	1.00
130_D	133_V	1.325	1.00
228_A	257_V	1.325	1.00
127_E	130_D	1.320	1.00
212_V	215_T	1.318	1.00
229_F	233_L	1.313	1.00
112_P	123_V	1.309	1.00
91_Y	147_D	1.309	1.00
235_S	250_L	1.309	1.00
169_L	173_V	1.304	1.00
17_S	51_L	1.291	1.00
18_F	53_I	1.285	1.00
60_T	64_N	1.269	1.00
145_K	148_F	1.265	1.00
74_E	166_T	1.263	1.00
229_F	254_L	1.253	1.00
15_K	67_L	1.239	1.00
56_F	68_L	1.231	1.00
140_E	143_W	1.230	1.00
12_E	16_N	1.222	1.00
145_K	149_D	1.219	1.00
159_A	210_Y	1.215	1.00
165_A	231_A	1.213	1.00
46_G	49_K	1.211	1.00
47_K	51_L	1.205	1.00
172_T	235_S	1.204	1.00
200_A	204_E	1.204	1.00
146_S	149_D	1.198	1.00
202_R	227_K	1.194	1.00
129_P	133_V	1.192	1.00
76_L	79_G	1.191	1.00
66_L	214_P	1.185	1.00
92_L	144_R	1.179	1.00
168_V	232_I	1.169	1.00
162_I	203_I	1.168	1.00
206_V	227_K	1.162	1.00
70_E	166_T	1.145	1.00
29_Y	34_H	1.140	1.00
128_S	135_V	1.139	1.00
176_S	187_G	1.138	1.00
19_N	23_S	1.122	1.00
93_V	124_E	1.120	1.00
130_D	143_W	1.098	1.00
9_E	12_E	1.096	1.00
203_I	231_A	1.094	1.00
21_F	47_K	1.093	1.00
208_S	212_V	1.088	1.00
85_S	94_S	1.085	1.00
21_F	51_L	1.077	1.00
226_K	230_K	1.075	1.00
144_R	147_D	1.064	1.00
227_K	230_K	1.057	1.00
63_T	215_T	1.049	1.00
17_S	53_I	1.048	1.00
66_L	159_A	1.045	1.00
164_H	228_A	1.043	1.00
213_N	221_F	1.038	1.00
201_L	220_I	1.032	1.00
162_I	210_Y	1.032	1.00
84_S	93_V	1.025	1.00
43_E	46_G	1.021	1.00
87_L	92_L	1.002	1.00
177_K	187_G	0.994	1.00
168_V	235_S	0.986	1.00
94_S	141_G	0.986	1.00
198_D	202_R	0.981	1.00
90_D	147_D	0.979	1.00
93_V	111_T	0.978	1.00
209_R	220_I	0.977	1.00
176_S	196_I	0.974	1.00
145_K	151_N	0.972	1.00
21_F	25_E	0.972	1.00
161_I	260_L	0.971	1.00
112_P	121_V	0.971	1.00
202_R	234_N	0.970	1.00
22_L	72_I	0.968	1.00
201_L	223_H	0.967	1.00
86_M	124_E	0.964	1.00
167_A	253_H	0.956	1.00
18_F	22_L	0.950	1.00
70_E	211_L	0.945	1.00
73_G	80_I	0.939	1.00
236_I	254_L	0.935	1.00
233_L	254_L	0.933	1.00
111_T	126_I	0.929	1.00
57_I	65_A	0.925	1.00
168_V	253_H	0.921	1.00
99_Y	242_I	0.919	1.00
116_S	119_N	0.911	1.00
99_Y	245_T	0.907	1.00
18_F	68_L	0.907	1.00
165_A	227_K	0.899	1.00
115_I	118_K	0.886	1.00
194_H	198_D	0.885	1.00
200_A	220_I	0.882	1.00
63_T	211_L	0.874	1.00
236_I	250_L	0.872	1.00
43_E	47_K	0.870	1.00
17_S	20_E	0.867	1.00
190_Q	194_H	0.866	1.00
204_E	208_S	0.866	1.00
127_E	149_D	0.859	1.00
82_A	112_P	0.857	1.00
86_M	91_Y	0.855	1.00
29_Y	33_K	0.852	1.00
204_E	207_R	0.843	1.00
129_P	132_S	0.842	1.00
20_E	23_S	0.841	1.00
84_S	97_V	0.839	1.00
15_K	19_N	0.838	1.00
195_R	238_S	0.837	1.00
42_M	105_K	0.835	1.00
173_V	196_I	0.833	1.00
132_S	135_V	0.832	1.00
109_I	133_V	0.831	1.00
164_H	253_H	0.828	1.00
172_T	238_S	0.824	1.00
130_D	149_D	0.822	1.00
91_Y	150_F	0.822	1.00
162_I	206_V	0.819	1.00
125_E	129_P	0.818	1.00
23_S	27_N	0.815	1.00
232_I	253_H	0.815	1.00
134_R	139_I	0.810	1.00
161_I	225_Y	0.806	1.00
139_I	142_E	0.804	1.00
176_S	186_I	0.803	1.00
195_R	198_D	0.801	1.00
172_T	239_H	0.800	1.00
230_K	233_L	0.799	1.00
98_N	137_K	0.797	1.00
11_L	63_T	0.795	1.00
232_I	257_V	0.793	1.00
232_I	254_L	0.789	1.00
170_K	174_E	0.785	1.00
164_H	257_V	0.777	1.00
93_V	113_K	0.772	1.00
198_D	234_N	0.770	1.00
158_S	210_Y	0.769	1.00
22_L	26_W	0.767	1.00
179_R	182_F	0.762	1.00
115_I	119_N	0.761	1.00
23_S	75_N	0.760	1.00
249_D	252_L	0.760	1.00
254_L	258_I	0.759	1.00
48_V	53_I	0.759	1.00
23_S	74_E	0.759	1.00
205_L	209_R	0.758	1.00
131_P	135_V	0.756	1.00
169_L	200_A	0.752	1.00
166_T	200_A	0.750	1.00
174_E	177_K	0.750	1.00
92_L	142_E	0.748	1.00
31_S	252_L	0.747	1.00
108_A	127_E	0.747	1.00
154_I	165_A	0.742	1.00
74_E	167_A	0.742	1.00
236_I	243_G	0.741	1.00
129_P	135_V	0.738	1.00
133_V	138_I	0.733	1.00
202_R	205_L	0.730	1.00
172_T	176_S	0.728	1.00
227_K	231_A	0.728	1.00
42_M	107_E	0.727	1.00
107_E	128_S	0.725	1.00
152_K	155_L	0.720	1.00
199_D	235_S	0.715	1.00
144_R	148_F	0.715	1.00
158_S	224_A	0.714	1.00
198_D	230_K	0.712	1.00
137_K	145_K	0.711	1.00
19_N	74_E	0.710	1.00
204_E	209_R	0.709	1.00
223_H	226_K	0.709	1.00
136_Y	139_I	0.708	1.00
19_N	75_N	0.707	1.00
86_M	113_K	0.707	1.00
56_F	60_T	0.706	1.00
212_V	217_P	0.703	1.00
158_S	221_F	0.700	1.00
210_Y	224_A	0.700	1.00
175_Y	242_I	0.700	1.00
167_A	170_K	0.698	1.00
133_V	143_W	0.697	1.00
192_I	195_R	0.694	1.00
239_H	250_L	0.693	1.00
114_G	121_V	0.691	1.00
186_I	189_Y	0.690	1.00
21_F	48_V	0.683	1.00
146_S	151_N	0.683	1.00
162_I	165_A	0.683	1.00
63_T	67_L	0.682	1.00
192_I	196_I	0.681	1.00
10_D	13_L	0.680	1.00
195_R	237_Q	0.680	1.00
108_A	125_E	0.679	1.00
182_F	189_Y	0.679	1.00
136_Y	141_G	0.678	1.00
189_Y	193_K	0.674	1.00
15_K	70_E	0.673	1.00
27_N	30_G	0.672	1.00
35_E	255_K	0.665	1.00
143_W	151_N	0.663	1.00
252_L	256_R	0.659	1.00
29_Y	43_E	0.659	1.00
36_V	246_A	0.657	1.00
34_H	39_D	0.655	1.00
111_T	140_E	0.652	1.00
109_I	138_I	0.652	1.00
209_R	221_F	0.651	1.00
82_A	114_G	0.651	1.00
159_A	163_G	0.646	1.00
155_L	165_A	0.645	1.00
172_T	199_D	0.645	1.00
229_F	258_I	0.643	1.00
31_S	36_V	0.643	1.00
14_I	64_N	0.643	1.00
146_S	150_F	0.642	1.00
171_E	253_H	0.641	1.00
93_V	145_K	0.641	1.00
114_G	120_D	0.638	1.00
124_E	129_P	0.638	1.00
139_I	151_N	0.636	1.00
124_E	150_F	0.631	1.00
191_A	195_R	0.628	1.00
209_R	213_N	0.626	1.00
87_L	142_E	0.626	1.00
143_W	148_F	0.625	1.00
117_N	120_D	0.625	1.00
116_S	120_D	0.624	1.00
44_V	79_G	0.624	1.00
143_W	146_S	0.622	1.00
8_N	64_N	0.622	1.00
131_P	134_R	0.619	1.00
165_A	206_V	0.618	1.00
228_A	232_I	0.617	1.00
65_A	156_L	0.611	1.00
78_P	81_V	0.610	1.00
33_K	36_V	0.609	1.00
145_K	150_F	0.606	1.00
68_L	72_I	0.605	1.00
88_G	92_L	0.603	1.00
202_R	226_K	0.602	1.00
39_D	42_M	0.596	1.00
249_D	253_H	0.593	1.00
180_I	188_S	0.593	1.00
155_L	214_P	0.592	1.00
198_D	201_L	0.591	1.00
110_V	123_V	0.588	1.00
207_R	211_L	0.584	1.00
222_K	225_Y	0.581	1.00
140_E	145_K	0.572	1.00
26_W	29_Y	0.572	1.00
90_D	148_F	0.571	1.00
155_L	159_A	0.571	1.00
77_L	81_V	0.567	1.00
175_Y	178_N	0.567	1.00
82_A	121_V	0.566	1.00
197_V	201_L	0.563	1.00
67_L	70_E	0.560	1.00
201_L	205_L	0.558	1.00
237_Q	258_I	0.558	1.00
108_A	149_D	0.556	1.00
155_L	218_E	0.556	1.00
166_T	203_I	0.556	1.00
44_V	47_K	0.554	1.00
167_A	249_D	0.553	1.00
199_D	238_S	0.552	1.00
84_S	95_V	0.552	1.00
139_I	145_K	0.550	1.00
90_D	146_S	0.547	1.00
139_I	148_F	0.544	1.00
14_I	68_L	0.543	1.00
71_I	75_N	0.542	1.00
142_E	145_K	0.542	1.00
202_R	231_A	0.541	1.00
16_N	23_S	0.539	1.00
139_I	146_S	0.539	1.00
84_S	111_T	0.539	1.00
69_N	73_G	0.539	1.00
67_L	71_I	0.537	1.00
204_E	220_I	0.537	1.00
10_D	64_N	0.535	1.00
66_L	210_Y	0.535	1.00
103_V	135_V	0.531	1.00
141_G	145_K	0.530	1.00
22_L	25_E	0.530	1.00
189_Y	192_I	0.529	1.00
181_A	186_I	0.528	1.00
26_W	44_V	0.526	1.00
202_R	206_V	0.521	1.00
232_I	250_L	0.521	1.00
77_L	80_I	0.519	1.00
14_I	18_F	0.518	1.00
137_K	141_G	0.518	1.00
136_Y	151_N	0.515	1.00
130_D	135_V	0.513	1.00
165_A	168_V	0.511	1.00
153_V	156_L	0.509	1.00
124_E	133_V	0.508	1.00
97_V	222_K	0.508	1.00
126_I	130_D	0.505	1.00
242_I	245_T	0.504	1.00
241_G	244_F	0.503	1.00
233_L	236_I	0.501	1.00
246_A	255_K	0.500	1.00

Legend: The i and j are positions as given in the UniProt sequence. Only predictions with Prob ≥ 0.7 are listed. For all 3L/2 predictions, click on one of the links below.

Sco = ((raw_sco - min_sco)/(avg_sco - min_sco))/2 + 0.5
Prob = P(contact | Sco, seq80/√len)
seq80 = effective number of sequences, after reducing redundancy to 80% identity

Text file of predictions (all 3L/2 predictions)
Generate restraints for ROSETTA Structure Modeling
Upload PDB model overlay contacts on the model

HHsearch Results:

Legend: GREMLIN results (Prob ≥ 0.7) overlaid on top PDB hits. The grey/red filled circles underneath are pdb residue contacts (min distance < 5 Angstroms). The shade of the circles is based on the top 10 (or top 20 if e-value < 1E-20) HHsearch results which uses the overall probability and per-site alignment prob. Inter oligomeric contacts in the pdb are in shades of red.

PDB	Chains	Cov	%	HHΔ
2d29A	4	0.9925	100	0.248	Contact Map
2ix5A	4	0.9962	100	0.258	Contact Map
1bucA	4	0.9887	100	0.26	Contact Map
2jifA	4	0.9925	100	0.264	Contact Map
4p13A	4	0.9962	100	0.265	Contact Map
1ukwA	4	0.9887	100	0.266	Contact Map
4irnA	4	0.9774	100	0.267	Contact Map
4ktoA	4	0.9962	100	0.267	Contact Map
3nf4A	4	0.9925	100	0.268	Contact Map
3pfdA	4	0.9624	100	0.268	Contact Map

Sequence Conservation (Image Generated using WebLogo v3)

Legend: Color is used to show Hydrophobicity (Blue: Hydrophilic, Green: Neutral and Black: Hydrophobic). Amount of gaps is represented by width.

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