Q97YZ2 - SULSO - GREMLIN Contacts

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Q97YZ2 - Uncharacterized protein

UniProt:	Q97YZ2	Sequences: MKVFEIPLSFVKVFLIETNENGLILIDSGTPGSGRRIIEGITRLGKNPNKIKSVIFTHSHVDHIGGAYEVKRFVNDAKFGIDNNGVNYLKNGKIREPVLHSSALKVIFSIGRPFFFRKFNGVNVDFVLEEGELVKGVEIIKTPGHTNDSISIYLPELNAIIVGDTLQGDKRGLKYPNIYEDFDGLRKSVENIKSFNPSMVYVSHGVSSSKFLV	Download Alignment We filter this alignment to remove sites that have many gaps before running GREMLIN. Date: 2015_01
Length:	213 (175)
Sequences:	18144 (13307)
Seq/√Len:	1005.9

ECOLI - YCBL GLO2
BACSU - YOBT YQGX YFLN YQJP YYBB PKSB YTNP YRKH
HALSA - Q9HSH2 Q9HNJ9 Q9HRG5 Q9HSD1 Q9HQ50 Q9HNJ2 Q9HQ42 O54647 O54661 Q9HS22
SULSO - Q97YZ2 Q97XZ1 Q97U88 Q97VU4 Q97VU0 Q97UR2 Q7LYK3 Q97UV2 Q97Y13 Q97YH8 Q97WC2

GREMLIN Results:

Legend: The darker and larger the blue dots, the higher coevolution strength.

Residue pairs sorted by coevolution strength:

i	j	Sco	Prob
142_T	151_S	4.595	1.00
22_G	52_K	3.946	1.00
56_F	67_A	3.603	1.00
53_S	80_G	3.060	1.00
138_E	155_P	2.694	1.00
137_V	154_L	2.637	1.00
55_I	152_I	2.531	1.00
24_I	53_S	2.431	1.00
133_L	136_G	2.363	1.00
38_I	73_F	2.326	1.00
139_I	150_I	2.309	1.00
83_N	129_E	2.241	1.00
85_G	148_D	2.151	1.00
133_L	138_E	2.097	1.00
78_K	126_F	2.085	1.00
80_G	126_F	2.071	1.00
17_E	23_L	2.060	1.00
181_D	184_G	2.017	1.00
130_E	191_N	2.013	1.00
53_S	78_K	2.007	1.00
154_L	157_L	2.006	1.00
139_I	152_I	1.994	1.00
14_F	201_Y	1.993	1.00
159_A	201_Y	1.975	1.00
26_I	57_T	1.898	1.00
22_G	50_K	1.897	1.00
158_N	198_S	1.825	1.00
23_L	46_K	1.806	1.00
82_D	150_I	1.792	1.00
82_D	141_K	1.781	1.00
138_E	153_Y	1.695	1.00
40_G	44_L	1.676	1.00
51_I	77_A	1.587	1.00
40_G	43_R	1.587	1.00
129_E	132_E	1.573	1.00
14_F	161_I	1.543	1.00
26_I	161_I	1.537	1.00
17_E	46_K	1.522	1.00
86_V	90_K	1.515	1.00
38_I	42_T	1.515	1.00
71_K	125_D	1.486	1.00
22_G	53_S	1.453	1.00
80_G	128_L	1.450	1.00
68_Y	72_R	1.428	1.00
153_Y	160_I	1.387	1.00
140_I	153_Y	1.381	1.00
186_R	190_E	1.375	1.00
24_I	55_I	1.374	1.00
151_S	160_I	1.369	1.00
23_L	51_I	1.292	1.00
67_A	79_F	1.292	1.00
153_Y	158_N	1.288	1.00
144_G	188_S	1.280	1.00
149_S	163_G	1.267	1.00
69_E	73_F	1.236	1.00
184_G	187_K	1.214	1.00
42_T	73_F	1.213	1.00
83_N	127_V	1.212	1.00
191_N	194_S	1.207	1.00
25_L	51_I	1.203	1.00
142_T	188_S	1.193	1.00
86_V	127_V	1.192	1.00
165_T	192_I	1.178	1.00
151_S	192_I	1.177	1.00
35_R	39_E	1.166	1.00
39_E	43_R	1.162	1.00
39_E	42_T	1.129	1.00
128_L	150_I	1.127	1.00
130_E	141_K	1.097	1.00
71_K	79_F	1.093	1.00
140_I	191_N	1.085	1.00
199_M	207_S	1.083	1.00
146_T	149_S	1.081	1.00
57_T	163_G	1.063	1.00
84_N	141_K	1.063	1.00
28_S	54_V	1.062	1.00
26_I	152_I	1.046	1.00
68_Y	71_K	1.038	1.00
41_I	51_I	1.036	1.00
23_L	52_K	1.026	1.00
126_F	132_E	1.024	1.00
81_I	85_G	1.022	1.00
85_G	146_T	1.008	1.00
18_T	21_N	0.997	1.00
183_D	187_K	0.965	1.00
34_G	69_E	0.956	1.00
151_S	165_T	0.945	1.00
190_E	193_K	0.936	1.00
182_F	186_R	0.935	1.00
84_N	87_N	0.933	1.00
28_S	67_A	0.919	1.00
162_V	200_V	0.915	1.00
131_G	138_E	0.913	1.00
182_F	185_L	0.913	1.00
61_V	65_G	0.907	1.00
19_N	22_G	0.903	1.00
34_G	66_G	0.902	1.00
159_A	199_M	0.900	1.00
165_T	185_L	0.898	1.00
16_I	26_I	0.892	1.00
200_V	208_S	0.890	1.00
142_T	149_S	0.890	1.00
57_T	152_I	0.887	1.00
12_K	205_G	0.884	1.00
25_L	28_S	0.879	1.00
15_L	40_G	0.879	1.00
189_V	193_K	0.876	1.00
15_L	23_L	0.874	1.00
153_Y	195_F	0.872	1.00
18_T	22_G	0.861	1.00
36_R	40_G	0.856	1.00
59_S	85_G	0.853	1.00
59_S	81_I	0.850	1.00
26_I	55_I	0.850	1.00
147_N	184_G	0.850	1.00
56_F	79_F	0.848	1.00
54_V	79_F	0.847	1.00
36_R	39_E	0.847	1.00
155_P	158_N	0.843	1.00
153_Y	197_P	0.829	1.00
168_G	206_V	0.827	1.00
140_I	151_S	0.826	1.00
91_N	94_I	0.825	1.00
55_I	137_V	0.825	1.00
24_I	137_V	0.823	1.00
54_V	77_A	0.822	1.00
11_V	29_G	0.822	1.00
83_N	86_V	0.819	1.00
54_V	67_A	0.816	1.00
46_K	50_K	0.811	1.00
136_G	156_E	0.810	1.00
190_E	194_S	0.809	1.00
142_T	165_T	0.807	1.00
13_V	37_I	0.803	1.00
33_S	36_R	0.788	1.00
160_I	200_V	0.786	1.00
85_G	88_Y	0.781	1.00
92_G	95_R	0.780	1.00
23_L	50_K	0.779	1.00
14_F	203_S	0.776	1.00
160_I	195_F	0.775	1.00
78_K	125_D	0.767	1.00
69_E	72_R	0.765	1.00
17_E	40_G	0.762	1.00
15_L	25_L	0.761	1.00
81_I	89_L	0.758	1.00
143_P	188_S	0.758	1.00
128_L	152_I	0.754	1.00
66_G	69_E	0.754	1.00
185_L	189_V	0.752	1.00
67_A	71_K	0.742	1.00
34_G	38_I	0.739	1.00
17_E	44_L	0.737	1.00
55_I	150_I	0.735	1.00
87_N	91_N	0.734	1.00
149_S	165_T	0.731	1.00
114_F	117_R	0.730	1.00
12_K	203_S	0.727	1.00
128_L	139_I	0.726	1.00
179_Y	185_L	0.721	1.00
13_V	29_G	0.717	1.00
118_K	122_V	0.709	1.00
23_L	41_I	0.705	1.00
124_V	127_V	0.703	1.00
17_E	21_N	0.699	1.00
133_L	155_P	0.699	1.00
138_E	195_F	0.697	1.00
113_P	116_F	0.696	1.00
25_L	41_I	0.691	1.00
158_N	196_N	0.686	1.00
9_S	61_V	0.685	1.00
81_I	124_V	0.684	1.00
16_I	154_L	0.683	1.00
115_F	119_F	0.681	1.00
140_I	160_I	0.676	1.00
165_T	188_S	0.669	1.00
117_R	121_G	0.668	1.00
136_G	155_P	0.667	1.00
187_K	191_N	0.667	1.00
122_V	125_D	0.659	1.00
154_L	159_A	0.658	1.00
56_F	64_I	0.655	1.00
35_R	69_E	0.651	1.00
154_L	158_N	0.650	1.00
82_D	85_G	0.644	1.00
71_K	76_D	0.637	1.00
52_K	78_K	0.634	1.00
123_N	127_V	0.633	1.00
171_R	174_K	0.633	1.00
83_N	87_N	0.631	1.00
115_F	118_K	0.629	1.00
16_I	24_I	0.629	1.00
25_L	37_I	0.626	1.00
137_V	152_I	0.622	1.00
173_L	176_P	0.621	1.00
35_R	38_I	0.620	1.00
202_V	205_G	0.616	1.00
174_K	177_N	0.615	1.00
187_K	190_E	0.615	1.00
128_L	134_V	0.614	1.00
197_P	200_V	0.611	1.00
201_Y	207_S	0.596	1.00
128_L	132_E	0.595	1.00
181_D	185_L	0.594	1.00
186_R	193_K	0.592	1.00
88_Y	147_N	0.592	1.00
131_G	191_N	0.588	1.00
81_I	86_V	0.587	1.00
28_S	66_G	0.585	1.00
162_V	166_L	0.585	1.00
15_L	41_I	0.582	1.00
93_K	96_E	0.580	1.00
87_N	90_K	0.578	1.00
141_K	150_I	0.575	1.00
147_N	177_N	0.575	1.00
129_E	141_K	0.573	1.00
161_I	201_Y	0.571	1.00
42_T	45_G	0.570	1.00
174_K	185_L	0.569	1.00
64_I	67_A	0.568	1.00
37_I	66_G	0.566	1.00
59_S	64_I	0.561	1.00
166_L	200_V	0.560	1.00
84_N	148_D	0.556	1.00
25_L	70_V	0.555	1.00
130_E	134_V	0.551	1.00
151_S	188_S	0.550	1.00
118_K	121_G	0.550	1.00
90_K	123_N	0.550	1.00
167_Q	185_L	0.550	1.00
114_F	121_G	0.547	1.00
15_L	51_I	0.547	1.00
191_N	195_F	0.547	1.00
162_V	202_V	0.546	1.00
173_L	177_N	0.546	1.00
18_T	24_I	0.543	1.00
80_G	132_E	0.541	1.00
53_S	56_F	0.540	1.00
132_E	139_I	0.539	1.00
41_I	46_K	0.537	1.00
114_F	119_F	0.537	1.00
91_N	95_R	0.537	1.00
153_Y	196_N	0.530	1.00
60_H	63_H	0.529	1.00
51_I	70_V	0.529	1.00
153_Y	157_L	0.529	1.00
59_S	148_D	0.527	1.00
21_N	45_G	0.526	1.00
72_R	120_N	0.524	1.00
151_S	162_V	0.521	1.00
15_L	46_K	0.516	1.00
115_F	120_N	0.515	1.00
193_K	197_P	0.515	1.00
53_S	126_F	0.514	1.00
59_S	88_Y	0.513	1.00
162_V	165_T	0.509	1.00
131_G	141_K	0.509	1.00
29_G	56_F	0.508	1.00
168_G	208_S	0.507	1.00
18_T	23_L	0.506	1.00
119_F	122_V	0.500	1.00
140_I	195_F	0.500	1.00

Legend: The i and j are positions as given in the UniProt sequence. Only predictions with Prob ≥ 0.7 are listed. For all 3L/2 predictions, click on one of the links below.

Sco = ((raw_sco - min_sco)/(avg_sco - min_sco))/2 + 0.5
Prob = P(contact | Sco, seq80/√len)
seq80 = effective number of sequences, after reducing redundancy to 80% identity

Text file of predictions (all 3L/2 predictions)
Generate restraints for ROSETTA Structure Modeling
Upload PDB model overlay contacts on the model

HHsearch Results:

Legend: GREMLIN results (Prob ≥ 0.7) overlaid on top PDB hits. The grey/red filled circles underneath are pdb residue contacts (min distance < 5 Angstroms). The shade of the circles is based on the top 10 (or top 20 if e-value < 1E-20) HHsearch results which uses the overall probability and per-site alignment prob. Inter oligomeric contacts in the pdb are in shades of red.

PDB	Chains	Cov	%	HHΔ
2zo4A	1	0.9812	100	0.307	Contact Map
2vw8A	2	0.9812	100	0.311	Contact Map
2zwrA	1	0.8873	100	0.337	Contact Map
4efzA	2	0.9014	100	0.342	Contact Map
1qh5A	1	0.7934	100	0.342	Contact Map
4yslA	2	0.9014	100	0.345	Contact Map
2p18A	1	0.8028	100	0.345	Contact Map
1k07A	1	0.9343	100	0.346	Contact Map
2yheA	3	0.9906	100	0.346	Contact Map
1xm8A	1	0.8028	100	0.347	Contact Map

Sequence Conservation (Image Generated using WebLogo v3)

Legend: Color is used to show Hydrophobicity (Blue: Hydrophilic, Green: Neutral and Black: Hydrophobic). Amount of gaps is represented by width.

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