Q97YY7 - SULSO - GREMLIN Contacts

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Q97YY7 - Uncharacterized protein

UniProt:	Q97YY7	Sequences: MKYQIKEITESNYHLLPQDLSVWEDRDAYHFWTEAFNVLGLQSVAEIYKALNFSNYTIVLNYEKELNQSILKNFWNNDYFASALGVSVIFEGGKSESILTPEPPSVDSATLLPIDFGYLPPTSNYSISNFKLVNRTLFLTGGLARFPNDMYHYSQSLYDASAPEPPWMITTFFEALYLEELGKSNEALNLMYWAYNHSQHGLLPEAIDPKYAYPLPTTSPLTWSSAMFVITALNYKPPSESQSVSPLLYVIIVIILATIVITVISVLRRR	Download Alignment We filter this alignment to remove sites that have many gaps before running GREMLIN. Date: 2015_01
Length:	270 (210)
Sequences:	2207 (1444)
Seq/√Len:	99.7

SULSO - Q97YY7 Q97V93 Q97ZD0 Q97V81 Q97VY0

GREMLIN Results:

Legend: The darker and larger the blue dots, the higher coevolution strength.

Residue pairs sorted by coevolution strength:

i	j	Sco	Prob
49_K	61_N	3.497	1.00
69_S	73_N	3.143	1.00
183_K	186_E	3.127	1.00
14_H	17_P	3.043	1.00
175_A	231_T	2.871	1.00
191_M	232_A	2.816	1.00
8_I	44_V	2.782	1.00
172_F	194_A	2.765	1.00
106_V	132_L	2.735	1.00
75_W	128_S	2.688	1.00
176_L	231_T	2.670	1.00
35_A	70_I	2.594	1.00
31_F	74_F	2.534	1.00
45_A	63_E	2.412	1.00
169_I	227_M	2.281	1.00
113_P	126_S	2.264	1.00
12_N	62_Y	2.248	1.00
8_I	41_L	2.163	1.00
20_L	27_D	2.103	1.00
134_N	186_E	2.075	1.00
10_E	14_H	2.037	1.00
35_A	113_P	2.028	1.00
29_Y	34_E	1.929	1.00
11_S	41_L	1.923	1.00
69_S	84_L	1.887	1.00
83_A	103_P	1.836	1.00
67_N	71_L	1.800	1.00
12_N	59_V	1.797	1.00
142_G	197_H	1.777	1.00
25_D	30_H	1.765	1.00
134_N	178_L	1.740	1.00
41_L	62_Y	1.730	1.00
62_Y	65_E	1.710	1.00
79_Y	128_S	1.708	1.00
76_N	79_Y	1.699	1.00
208_D	211_Y	1.685	1.00
64_K	68_Q	1.655	1.00
68_Q	72_K	1.644	1.00
75_W	125_Y	1.619	1.00
28_A	83_A	1.617	1.00
76_N	104_P	1.616	1.00
131_K	135_R	1.590	1.00
138_F	143_L	1.574	1.00
71_L	119_L	1.553	1.00
108_S	170_T	1.543	1.00
202_L	219_S	1.538	1.00
127_I	181_L	1.526	1.00
203_L	224_S	1.520	1.00
130_F	181_L	1.493	1.00
176_L	230_I	1.482	1.00
176_L	234_N	1.470	1.00
198_S	203_L	1.466	1.00
136_T	147_P	1.465	1.00
83_A	102_E	1.459	1.00
153_Y	159_D	1.451	1.00
47_I	51_L	1.418	1.00
62_Y	66_L	1.407	1.00
32_W	109_A	1.399	1.00
15_L	66_L	1.397	1.00
16_L	65_E	1.387	0.99
56_Y	59_V	1.386	0.99
74_F	84_L	1.383	0.99
53_F	56_Y	1.374	0.99
45_A	57_T	1.373	0.99
12_N	41_L	1.370	0.99
133_V	143_L	1.363	0.99
76_N	81_A	1.350	0.99
130_F	174_E	1.346	0.99
78_D	104_P	1.343	0.99
110_T	133_V	1.342	0.99
34_E	74_F	1.342	0.99
134_N	174_E	1.297	0.99
57_T	60_L	1.292	0.99
204_P	214_P	1.280	0.99
37_N	66_L	1.272	0.99
131_K	134_N	1.232	0.99
71_L	80_F	1.232	0.99
134_N	138_F	1.231	0.99
48_Y	57_T	1.221	0.99
171_T	194_A	1.210	0.99
131_K	183_K	1.198	0.98
159_D	162_A	1.189	0.98
168_M	207_I	1.168	0.98
119_L	126_S	1.163	0.98
79_Y	110_T	1.161	0.98
39_L	43_S	1.161	0.98
20_L	25_D	1.153	0.98
177_Y	181_L	1.141	0.98
169_I	223_W	1.139	0.98
80_F	119_L	1.118	0.98
150_M	153_Y	1.115	0.98
121_P	180_E	1.106	0.97
168_M	224_S	1.094	0.97
188_L	192_Y	1.092	0.97
25_D	146_F	1.087	0.97
174_E	190_L	1.076	0.97
169_I	224_S	1.075	0.97
31_F	110_T	1.071	0.97
41_L	66_L	1.065	0.97
9_T	13_Y	1.059	0.97
208_D	213_Y	1.059	0.97
59_V	62_Y	1.055	0.97
179_E	234_N	1.049	0.96
174_E	178_L	1.048	0.96
179_E	184_S	1.047	0.96
184_S	238_P	1.031	0.96
209_P	215_L	1.014	0.96
165_P	215_L	1.009	0.96
8_I	12_N	1.006	0.96
140_T	193_W	1.004	0.96
191_M	235_Y	1.002	0.95
114_I	126_S	1.001	0.95
192_Y	195_Y	1.000	0.95
175_A	190_L	0.999	0.95
73_N	102_E	0.992	0.95
124_N	127_I	0.977	0.95
9_T	12_N	0.967	0.94
25_D	152_H	0.965	0.94
143_L	174_E	0.960	0.94
44_V	60_L	0.959	0.94
188_L	239_S	0.958	0.94
195_Y	198_S	0.942	0.94
115_D	177_Y	0.939	0.94
179_E	235_Y	0.921	0.93
34_E	37_N	0.916	0.93
132_L	136_T	0.907	0.92
49_K	57_T	0.903	0.92
56_Y	60_L	0.902	0.92
127_I	130_F	0.900	0.92
207_I	212_A	0.883	0.91
220_P	225_S	0.869	0.91
134_N	190_L	0.868	0.91
191_M	195_Y	0.860	0.90
226_A	230_I	0.857	0.90
126_S	177_Y	0.846	0.89
126_S	130_F	0.844	0.89
214_P	219_S	0.843	0.89
231_T	234_N	0.834	0.89
71_L	125_Y	0.834	0.89
11_S	44_V	0.828	0.88
106_V	136_T	0.826	0.88
227_M	230_I	0.825	0.88
19_D	33_T	0.818	0.88
232_A	236_K	0.810	0.87
25_D	151_Y	0.804	0.87
148_N	151_Y	0.801	0.87
164_E	206_A	0.800	0.87
110_T	129_N	0.799	0.87
80_F	84_L	0.799	0.87
192_Y	196_N	0.798	0.87
167_W	221_L	0.795	0.86
124_N	128_S	0.792	0.86
198_S	224_S	0.789	0.86
28_A	102_E	0.784	0.86
50_A	53_F	0.781	0.85
202_L	220_P	0.778	0.85
35_A	116_F	0.767	0.84
106_V	133_V	0.766	0.84
75_W	79_Y	0.756	0.83
122_T	127_I	0.754	0.83
179_E	231_T	0.748	0.83
185_N	189_N	0.746	0.83
9_T	56_Y	0.745	0.83
165_P	206_A	0.745	0.83
144_A	147_P	0.743	0.82
55_N	60_L	0.737	0.82
18_Q	29_Y	0.732	0.81
236_K	239_S	0.728	0.81
178_L	183_K	0.727	0.81
130_F	177_Y	0.724	0.81
120_P	126_S	0.721	0.80
81_A	104_P	0.719	0.80
164_E	167_W	0.716	0.80
168_M	194_A	0.714	0.80
113_P	119_L	0.714	0.80
137_L	220_P	0.714	0.80
70_I	118_Y	0.712	0.80
55_N	58_I	0.711	0.80
8_I	11_S	0.710	0.79
31_F	84_L	0.710	0.79
164_E	223_W	0.709	0.79
105_S	148_N	0.708	0.79
11_S	15_L	0.707	0.79
22_V	223_W	0.706	0.79
175_A	194_A	0.706	0.79
17_P	27_D	0.699	0.78
11_S	144_A	0.697	0.78
146_F	162_A	0.697	0.78
187_A	235_Y	0.694	0.78
22_V	109_A	0.694	0.78
194_A	197_H	0.692	0.78
80_F	118_Y	0.691	0.78
49_K	63_E	0.688	0.77
46_E	50_A	0.686	0.77
47_I	50_A	0.685	0.77
111_L	133_V	0.685	0.77
42_Q	61_N	0.683	0.77
57_T	61_N	0.682	0.77
80_F	123_S	0.681	0.77
66_L	70_I	0.680	0.76
194_A	203_L	0.679	0.76
11_S	37_N	0.677	0.76
223_W	227_M	0.676	0.76
44_V	48_Y	0.674	0.76
34_E	70_I	0.665	0.75
71_L	84_L	0.663	0.75
127_I	131_K	0.657	0.74
38_V	42_Q	0.647	0.73
81_A	103_P	0.644	0.73
58_I	61_N	0.641	0.72
39_L	106_V	0.640	0.72
206_A	223_W	0.640	0.72
168_M	214_P	0.639	0.72
169_I	173_F	0.636	0.72
188_L	235_Y	0.633	0.71
145_R	205_E	0.631	0.71
111_L	130_F	0.630	0.71
183_K	187_A	0.629	0.71
48_Y	52_N	0.626	0.70
232_A	235_Y	0.625	0.70
141_G	193_W	0.623	0.70
131_K	181_L	0.620	0.70
9_T	60_L	0.618	0.69
195_Y	228_F	0.618	0.69
79_Y	82_S	0.617	0.69
160_A	163_P	0.616	0.69
125_Y	128_S	0.616	0.69
76_N	102_E	0.611	0.69
25_D	166_P	0.610	0.68
44_V	121_P	0.603	0.68
17_P	65_E	0.602	0.67
48_Y	55_N	0.601	0.67
115_D	176_L	0.601	0.67
228_F	232_A	0.598	0.67
40_G	43_S	0.597	0.67
117_G	137_L	0.596	0.67
67_N	80_F	0.594	0.66
16_L	73_N	0.593	0.66
128_S	132_L	0.593	0.66
218_T	221_L	0.592	0.66
78_D	185_N	0.591	0.66
179_E	238_P	0.588	0.66
79_Y	132_L	0.588	0.66
67_N	119_L	0.588	0.66
152_H	217_T	0.587	0.65
80_F	235_Y	0.584	0.65
149_D	152_H	0.584	0.65
54_S	58_I	0.584	0.65
204_P	209_P	0.583	0.65
11_S	40_G	0.582	0.65
30_H	83_A	0.582	0.65
80_F	83_A	0.581	0.65
80_F	125_Y	0.581	0.65
167_W	223_W	0.581	0.65
71_L	120_P	0.577	0.64
146_F	159_D	0.577	0.64
135_R	186_E	0.575	0.64
147_P	152_H	0.573	0.64
77_N	125_Y	0.573	0.64
171_T	228_F	0.572	0.64
186_E	189_N	0.569	0.63
142_G	207_I	0.567	0.63
21_S	25_D	0.566	0.63
167_W	218_T	0.563	0.62
141_G	189_N	0.563	0.62
9_T	62_Y	0.562	0.62
224_S	227_M	0.561	0.62
234_N	238_P	0.559	0.62
135_R	185_N	0.558	0.62
176_L	227_M	0.556	0.61
32_W	112_L	0.553	0.61
149_D	212_A	0.552	0.61
138_F	178_L	0.552	0.61
131_K	178_L	0.551	0.61
8_I	47_I	0.551	0.61
21_S	164_E	0.548	0.60
38_V	118_Y	0.547	0.60
128_S	131_K	0.547	0.60
208_D	215_L	0.547	0.60
197_H	212_A	0.546	0.60
66_L	229_V	0.546	0.60
18_Q	28_A	0.545	0.60
172_F	191_M	0.544	0.60
42_Q	46_E	0.542	0.59
111_L	202_L	0.541	0.59
127_I	183_K	0.541	0.59
175_A	199_Q	0.539	0.59
171_T	197_H	0.539	0.59
123_S	129_N	0.537	0.59
169_I	207_I	0.536	0.59
168_M	203_L	0.535	0.58
13_Y	17_P	0.533	0.58
230_I	234_N	0.532	0.58
117_G	234_N	0.531	0.58
114_I	177_Y	0.529	0.58
112_L	115_D	0.526	0.57
164_E	218_T	0.525	0.57
198_S	225_S	0.525	0.57
199_Q	219_S	0.523	0.57
178_L	190_L	0.521	0.56
148_N	152_H	0.520	0.56
25_D	32_W	0.520	0.56
222_T	232_A	0.517	0.56
172_F	228_F	0.515	0.56
180_E	234_N	0.513	0.55
173_F	220_P	0.511	0.55
21_S	40_G	0.511	0.55
207_I	211_Y	0.509	0.55
29_Y	73_N	0.508	0.55
53_F	58_I	0.506	0.54
39_L	116_F	0.504	0.54
178_L	186_E	0.504	0.54
123_S	126_S	0.504	0.54
79_Y	83_A	0.501	0.54
108_S	133_V	0.500	0.53

Legend: The i and j are positions as given in the UniProt sequence. Only predictions with Prob ≥ 0.7 are listed. For all 3L/2 predictions, click on one of the links below.

Sco = ((raw_sco - min_sco)/(avg_sco - min_sco))/2 + 0.5
Prob = P(contact | Sco, seq80/√len)
seq80 = effective number of sequences, after reducing redundancy to 80% identity

Text file of predictions (all 3L/2 predictions)
Generate restraints for ROSETTA Structure Modeling
Upload PDB model overlay contacts on the model

HHsearch Results:

Legend: GREMLIN results (Prob ≥ 0.7) overlaid on top PDB hits. The grey/red filled circles underneath are pdb residue contacts (min distance < 5 Angstroms). The shade of the circles is based on the top 10 (or top 20 if e-value < 1E-20) HHsearch results which uses the overall probability and per-site alignment prob. Inter oligomeric contacts in the pdb are in shades of red.

PDB	Chains	Cov	%	HHΔ
2fbaA	1	0.8333	100	0.324	Contact Map
2vn4A	1	0.9037	100	0.375	Contact Map
1gaiA	1	0.8963	100	0.383	Contact Map
1ulvA	1	0.9889	100	0.464	Contact Map
1lf6A	1	0.9185	100	0.474	Contact Map
3qt9A	1	0.8	100	0.528	Contact Map
3qryB	1	0.8148	100	0.54	Contact Map
3p2cA	2	0.8296	100	0.544	Contact Map
2p0vA	2	0.8222	100	0.544	Contact Map
3w7tA	1	0.8074	99.9	0.719	Contact Map

Sequence Conservation (Image Generated using WebLogo v3)

Legend: Color is used to show Hydrophobicity (Blue: Hydrophilic, Green: Neutral and Black: Hydrophobic). Amount of gaps is represented by width.

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