Q97YY3 - SULSO - GREMLIN Contacts

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Q97YY3 - Sugar ABC transporter

UniProt:	Q97YY3	Sequences: MIHMMQIKKYRLFKILRLAISYLVLIIMAAFSIFPLYYVFMTSFSNAPNLISLAVSDLLPKHIYFTAYKYLFTTNLYGGSFPLWIRNSLILAGSTAIISVLLALITGYALSRLNVPAKKILATFIYIVTFFPYTASAVPLYLLFAKFHLLNYIGLILAYTPGTSIFAAFIAKLSIDSIPPSYEEIAMIDGLSRFGAFLRIVMRLALPVVALTALLGFSGTYLDFALAYSFLLPNVKEWTATIGLYYMAGLLNQASAPAYNIFAAGAVIMGIPLMALFIVSQRMMTRAYSNLAGVKQ	Download Alignment We filter this alignment to remove sites that have many gaps before running GREMLIN. Date: 2015_01
Length:	296 (254)
Sequences:	68705 (45769)
Seq/√Len:	2871.8

ECOLI - POTH YCJP MALG YCJO UGPE UGPA YDCU PSTC PSTA POTI THIP YDCV POTB CYSW CYST POTC MALF YNJC MODB TAUC SSUC PHNE YEHY YEHW METI PROW YECS
BACSU - YESQ GANQ YURM MDXG GANP AMYC LPLC AMYD ARAQ MDXF YTCP ARAP YTEP LPLB YESP YQGH YURN YQGI YVGM SSUC YTLD OPUAB TCYB TCYL METP YXEN OPUCB OPUBB OPUCD OPUBD
HALSA - Q9HML6 Q9HP01 Q9HHQ6 Q9HMT4 Q9HHQ7 Q9HP02 Q9HR05 Q9HS11 Q9HPK3 Q9HNI9 Q9HS12
SULSO - Q97YY3 Q97UF3 Q97UY9 Q97YY2 Q97ZC1 Q97ZT7 Q97UZ0 Q97VC0 Q97ZT6 Q97ZC2 Q97UF4 Q97Z98

GREMLIN Results:

Legend: The darker and larger the blue dots, the higher coevolution strength.

Residue pairs sorted by coevolution strength:

i	j	Sco	Prob
195_G	199_R	3.947	1.00
86_R	90_I	3.303	1.00
187_M	196_A	3.158	1.00
172_K	176_D	3.047	1.00
83_L	86_R	2.681	1.00
174_S	208_V	2.536	1.00
94_S	156_I	2.510	1.00
192_S	195_G	2.509	1.00
112_R	183_E	2.499	1.00
186_A	196_A	2.488	1.00
84_W	243_G	2.481	1.00
69_K	73_T	2.474	1.00
43_S	68_Y	2.437	1.00
183_E	201_V	2.424	1.00
82_P	86_R	2.424	1.00
98_I	160_T	2.408	1.00
193_R	196_A	2.363	1.00
66_T	69_K	2.352	1.00
238_W	246_Y	2.350	1.00
96_A	213_A	2.327	1.00
66_T	70_Y	2.215	1.00
171_A	209_V	2.199	1.00
194_F	198_L	2.184	1.00
258_A	261_I	2.174	1.00
115_V	118_K	2.114	1.00
195_G	198_L	2.056	1.00
191_L	195_G	2.055	1.00
167_A	212_T	2.023	1.00
37_Y	41_M	1.951	1.00
182_Y	204_L	1.949	1.00
111_S	176_D	1.948	1.00
104_L	197_F	1.946	1.00
186_A	191_L	1.919	1.00
122_A	172_K	1.913	1.00
41_M	45_S	1.894	1.00
104_L	205_A	1.877	1.00
175_I	205_A	1.862	1.00
83_L	87_N	1.796	1.00
100_V	213_A	1.776	1.00
187_M	193_R	1.752	1.00
90_I	94_S	1.703	1.00
90_I	152_Y	1.698	1.00
95_T	220_T	1.697	1.00
70_Y	261_I	1.683	1.00
183_E	196_A	1.677	1.00
92_A	217_F	1.641	1.00
103_A	167_A	1.633	1.00
183_E	187_M	1.629	1.00
104_L	171_A	1.614	1.00
243_G	247_M	1.596	1.00
106_T	168_A	1.590	1.00
22_Y	26_I	1.547	1.00
180_P	183_E	1.547	1.00
110_L	168_A	1.521	1.00
70_Y	73_T	1.509	1.00
224_F	228_Y	1.478	1.00
65_F	69_K	1.474	1.00
152_Y	237_E	1.473	1.00
117_A	120_I	1.464	1.00
80_S	83_L	1.449	1.00
64_Y	67_A	1.439	1.00
167_A	216_G	1.434	1.00
75_N	80_S	1.423	1.00
114_N	118_K	1.405	1.00
40_F	267_V	1.393	1.00
111_S	172_K	1.385	1.00
34_F	38_Y	1.377	1.00
202_M	209_V	1.371	1.00
38_Y	42_T	1.365	1.00
99_S	216_G	1.363	1.00
211_L	215_L	1.352	1.00
239_T	242_I	1.335	1.00
175_I	201_V	1.331	1.00
101_L	105_I	1.319	1.00
107_G	171_A	1.311	1.00
171_A	212_T	1.303	1.00
180_P	184_E	1.296	1.00
181_S	184_E	1.281	1.00
91_L	239_T	1.276	1.00
15_I	19_A	1.273	1.00
108_Y	175_I	1.262	1.00
112_R	180_P	1.256	1.00
120_I	123_T	1.244	1.00
26_I	30_A	1.240	1.00
104_L	209_V	1.234	1.00
245_Y	249_G	1.227	1.00
70_Y	74_T	1.226	1.00
238_W	243_G	1.225	1.00
186_A	200_I	1.221	1.00
282_R	285_T	1.216	1.00
97_I	101_L	1.208	1.00
87_N	90_I	1.203	1.00
243_G	246_Y	1.197	1.00
100_V	209_V	1.194	1.00
17_R	21_S	1.184	1.00
19_A	23_L	1.180	1.00
94_S	97_I	1.166	1.00
206_L	210_A	1.165	1.00
178_I	204_L	1.161	1.00
49_N	62_H	1.160	1.00
16_L	20_I	1.149	1.00
39_V	267_V	1.144	1.00
273_L	277_F	1.126	1.00
142_L	146_K	1.123	1.00
192_S	196_A	1.117	1.00
16_L	19_A	1.115	1.00
46_N	49_N	1.102	1.00
38_Y	41_M	1.094	1.00
120_I	124_F	1.093	1.00
144_F	154_G	1.091	1.00
234_N	237_E	1.086	1.00
19_A	22_Y	1.086	1.00
171_A	208_V	1.074	1.00
223_D	226_L	1.062	1.00
14_K	17_R	1.057	1.00
226_L	230_F	1.052	1.00
105_I	109_A	1.049	1.00
156_I	160_T	1.048	1.00
164_S	168_A	1.047	1.00
72_F	82_P	1.046	1.00
74_T	80_S	1.042	1.00
98_I	156_I	1.038	1.00
94_S	98_I	1.028	1.00
95_T	99_S	1.024	1.00
278_I	282_R	1.020	1.00
183_E	193_R	1.018	1.00
111_S	175_I	1.016	1.00
108_Y	193_R	1.007	1.00
204_L	207_P	1.006	1.00
170_I	212_T	1.006	1.00
149_L	153_I	0.999	1.00
246_Y	249_G	0.996	1.00
108_Y	197_F	0.990	1.00
240_A	244_L	0.980	1.00
191_L	196_A	0.979	1.00
97_I	213_A	0.979	1.00
89_L	93_G	0.978	1.00
196_A	199_R	0.963	1.00
224_F	245_Y	0.957	1.00
18_L	22_Y	0.942	1.00
155_L	227_A	0.938	1.00
29_A	33_I	0.938	1.00
95_T	159_Y	0.937	1.00
90_I	93_G	0.932	1.00
68_Y	267_V	0.932	1.00
59_L	62_H	0.927	1.00
21_S	25_L	0.913	1.00
223_D	227_A	0.904	1.00
269_M	273_L	0.904	1.00
118_K	176_D	0.903	1.00
237_E	240_A	0.896	1.00
14_K	18_L	0.892	1.00
99_S	103_A	0.890	1.00
119_K	122_A	0.889	1.00
107_G	111_S	0.887	1.00
93_G	97_I	0.883	1.00
42_T	263_A	0.872	1.00
152_Y	156_I	0.871	1.00
174_S	205_A	0.870	1.00
279_V	283_M	0.869	1.00
205_A	208_V	0.867	1.00
98_I	101_L	0.866	1.00
235_V	238_W	0.859	1.00
238_W	242_I	0.858	1.00
95_T	156_I	0.858	1.00
141_Y	145_A	0.857	1.00
206_L	209_V	0.856	1.00
196_A	201_V	0.854	1.00
85_I	89_L	0.852	1.00
71_L	268_I	0.849	1.00
87_N	152_Y	0.848	1.00
126_Y	169_F	0.847	1.00
159_Y	220_T	0.847	1.00
140_L	158_A	0.845	1.00
90_I	153_I	0.843	1.00
103_A	168_A	0.841	1.00
91_L	152_Y	0.840	1.00
67_A	70_Y	0.836	1.00
227_A	239_T	0.834	1.00
91_L	159_Y	0.831	1.00
110_L	122_A	0.829	1.00
246_Y	250_L	0.825	1.00
275_A	279_V	0.825	1.00
116_P	119_K	0.824	1.00
241_T	244_L	0.823	1.00
171_A	205_A	0.823	1.00
86_R	89_L	0.821	1.00
191_L	199_R	0.821	1.00
216_G	220_T	0.819	1.00
109_A	115_V	0.818	1.00
42_T	45_S	0.814	1.00
198_L	202_M	0.812	1.00
167_A	171_A	0.810	1.00
153_I	157_L	0.810	1.00
158_A	226_L	0.808	1.00
107_G	168_A	0.800	1.00
48_P	51_I	0.799	1.00
197_F	202_M	0.797	1.00
99_S	163_T	0.795	1.00
261_I	265_G	0.793	1.00
81_F	265_G	0.790	1.00
44_F	63_I	0.787	1.00
99_S	167_A	0.787	1.00
206_L	283_M	0.784	1.00
67_A	260_N	0.783	1.00
133_Y	162_G	0.774	1.00
193_R	197_F	0.769	1.00
240_A	248_A	0.766	1.00
72_F	75_N	0.765	1.00
137_A	225_A	0.760	1.00
63_I	66_T	0.758	1.00
39_V	263_A	0.751	1.00
49_N	61_K	0.750	1.00
182_Y	200_I	0.746	1.00
45_S	49_N	0.745	1.00
46_N	61_K	0.742	1.00
247_M	258_A	0.741	1.00
44_F	64_Y	0.738	1.00
45_S	60_P	0.738	1.00
263_A	267_V	0.734	1.00
99_S	220_T	0.733	1.00
107_G	175_I	0.726	1.00
133_Y	225_A	0.725	1.00
140_L	230_F	0.723	1.00
69_K	72_F	0.722	1.00
20_I	23_L	0.720	1.00
96_A	217_F	0.720	1.00
28_M	32_S	0.720	1.00
249_G	256_A	0.720	1.00
209_V	212_T	0.711	1.00
185_I	189_D	0.711	1.00
92_A	96_A	0.710	1.00
100_V	171_A	0.708	1.00
260_N	263_A	0.708	1.00
126_Y	129_T	0.707	1.00
84_W	87_N	0.707	1.00
242_I	246_Y	0.705	1.00
153_I	156_I	0.704	1.00
46_N	62_H	0.704	1.00
64_Y	68_Y	0.699	1.00
94_S	160_T	0.698	1.00
23_L	26_I	0.697	1.00
178_I	205_A	0.695	1.00
185_I	188_I	0.693	1.00
197_F	201_V	0.693	1.00
82_P	85_I	0.693	1.00
136_S	161_P	0.689	1.00
25_L	29_A	0.689	1.00
110_L	172_K	0.687	1.00
34_F	37_Y	0.682	1.00
62_H	66_T	0.678	1.00
259_Y	263_A	0.674	1.00
280_S	283_M	0.672	1.00
20_I	24_V	0.666	1.00
109_A	113_L	0.665	1.00
110_L	121_L	0.665	1.00
116_P	120_I	0.664	1.00
85_I	240_A	0.662	1.00
201_V	204_L	0.659	1.00
171_A	175_I	0.658	1.00
106_T	164_S	0.658	1.00
180_P	187_M	0.657	1.00
103_A	171_A	0.655	1.00
39_V	266_A	0.655	1.00
274_M	278_I	0.652	1.00
259_Y	262_F	0.651	1.00
96_A	100_V	0.650	1.00
106_T	125_I	0.649	1.00
145_A	150_L	0.647	1.00
208_V	212_T	0.646	1.00
70_Y	258_A	0.644	1.00
62_H	65_F	0.643	1.00
75_N	83_L	0.643	1.00
209_V	213_A	0.643	1.00
225_A	228_Y	0.642	1.00
65_F	68_Y	0.641	1.00
142_L	145_A	0.639	1.00
125_I	165_I	0.637	1.00
29_A	32_S	0.635	1.00
122_A	169_F	0.633	1.00
163_T	219_G	0.632	1.00
75_N	82_P	0.627	1.00
117_A	121_L	0.625	1.00
158_A	230_F	0.621	1.00
102_L	160_T	0.618	1.00
47_A	51_I	0.617	1.00
33_I	37_Y	0.617	1.00
91_L	156_I	0.615	1.00
266_A	269_M	0.614	1.00
115_V	121_L	0.609	1.00
18_L	21_S	0.609	1.00
92_A	221_Y	0.607	1.00
240_A	246_Y	0.606	1.00
123_T	127_I	0.605	1.00
228_Y	242_I	0.603	1.00
91_L	95_T	0.603	1.00
71_L	265_G	0.601	1.00
240_A	269_M	0.601	1.00
198_L	201_V	0.600	1.00
99_S	160_T	0.600	1.00
92_A	220_T	0.599	1.00
119_K	123_T	0.598	1.00
15_I	18_L	0.598	1.00
140_L	143_L	0.596	1.00
107_G	172_K	0.594	1.00
243_G	248_A	0.594	1.00
154_G	158_A	0.593	1.00
137_A	141_Y	0.592	1.00
237_E	246_Y	0.591	1.00
263_A	266_A	0.590	1.00
100_V	104_L	0.589	1.00
196_A	200_I	0.589	1.00
219_G	222_L	0.588	1.00
108_Y	201_V	0.588	1.00
88_S	241_T	0.587	1.00
231_L	234_N	0.586	1.00
272_P	275_A	0.583	1.00
43_S	264_A	0.582	1.00
61_K	64_Y	0.581	1.00
237_E	248_A	0.580	1.00
24_V	28_M	0.579	1.00
45_S	62_H	0.577	1.00
277_F	281_Q	0.577	1.00
220_T	223_D	0.574	1.00
213_A	216_G	0.574	1.00
257_P	261_I	0.573	1.00
237_E	241_T	0.571	1.00
163_T	216_G	0.571	1.00
247_M	265_G	0.569	1.00
210_A	213_A	0.568	1.00
170_I	208_V	0.566	1.00
129_T	166_F	0.566	1.00
275_A	278_I	0.565	1.00
261_I	264_A	0.563	1.00
113_L	193_R	0.562	1.00
243_G	265_G	0.562	1.00
88_S	221_Y	0.561	1.00
87_N	237_E	0.557	1.00
248_A	262_F	0.553	1.00
245_Y	248_A	0.553	1.00
71_L	261_I	0.552	1.00
129_T	165_I	0.552	1.00
68_Y	264_A	0.551	1.00
60_P	63_I	0.551	1.00
151_N	234_N	0.548	1.00
106_T	109_A	0.548	1.00
242_I	245_Y	0.544	1.00
102_L	164_S	0.543	1.00
47_A	60_P	0.543	1.00
218_S	222_L	0.540	1.00
178_I	183_E	0.540	1.00
114_N	119_K	0.539	1.00
124_F	128_V	0.536	1.00
95_T	160_T	0.534	1.00
30_A	34_F	0.533	1.00
45_S	61_K	0.531	1.00
96_A	101_L	0.528	1.00
184_E	187_M	0.526	1.00
69_K	74_T	0.526	1.00
155_L	159_Y	0.521	1.00
128_V	165_I	0.521	1.00
247_M	261_I	0.521	1.00
192_S	198_L	0.520	1.00
122_A	176_D	0.519	1.00
159_Y	223_D	0.514	1.00
61_K	65_F	0.514	1.00
122_A	168_A	0.512	1.00
83_L	90_I	0.509	1.00
114_N	180_P	0.507	1.00
88_S	242_I	0.507	1.00
74_T	82_P	0.507	1.00
133_Y	137_A	0.506	1.00
22_Y	25_L	0.506	1.00
121_L	125_I	0.505	1.00
152_Y	155_L	0.504	1.00
114_N	117_A	0.503	1.00
41_M	44_F	0.502	1.00
115_V	119_K	0.502	1.00
64_Y	69_K	0.501	1.00
17_R	20_I	0.500	1.00
27_I	31_F	0.500	1.00

Legend: The i and j are positions as given in the UniProt sequence. Only predictions with Prob ≥ 0.7 are listed. For all 3L/2 predictions, click on one of the links below.

Sco = ((raw_sco - min_sco)/(avg_sco - min_sco))/2 + 0.5
Prob = P(contact | Sco, seq80/√len)
seq80 = effective number of sequences, after reducing redundancy to 80% identity

Text file of predictions (all 3L/2 predictions)
Generate restraints for ROSETTA Structure Modeling
Upload PDB model overlay contacts on the model

HHsearch Results:

Legend: GREMLIN results (Prob ≥ 0.7) overlaid on top PDB hits. The grey/red filled circles underneath are pdb residue contacts (min distance < 5 Angstroms). The shade of the circles is based on the top 10 (or top 20 if e-value < 1E-20) HHsearch results which uses the overall probability and per-site alignment prob. Inter oligomeric contacts in the pdb are in shades of red.

PDB	Chains	Cov	%	HHΔ
4tquN	1	0.9189	100	0.313	Contact Map
3rlfG	1	0.9122	100	0.316	Contact Map
2onkC	2	0.8142	100	0.337	Contact Map
3d31C	2	0.7973	100	0.356	Contact Map
4tquM	1	0.8716	100	0.363	Contact Map
3rlfF	1	0.9155	100	0.406	Contact Map
4ymuD	2	0.7196	99.9	0.518	Contact Map
3tuiA	2	0.6993	99.9	0.552	Contact Map
2m8rA	1	0.1284	23.4	0.942	Contact Map
3tx3A	2	0.2128	15.9	0.946	Contact Map

Sequence Conservation (Image Generated using WebLogo v3)

Legend: Color is used to show Hydrophobicity (Blue: Hydrophilic, Green: Neutral and Black: Hydrophobic). Amount of gaps is represented by width.

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