Q97YY2 - SULSO - GREMLIN Contacts

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Q97YY2 - Sugar transport protein, hypothetical

UniProt:	Q97YY2	Sequences: MVNQEMKKEKLFSLFYILPIVIVTVFLFVFPLLYSVYISFTNLSLLHFLTYSYVGLRNYLIIFQYGYFLELLKNTLIWTIGSLLTMMSLGFVLALILNQTDLKGRSIFYAILILPWAFPGFISILIWQGLWVDPYGMMNRLILPLLHLPKVNSLTSTTDAWIELIATNDWLSFPYFMTVFYSALQSIPRELYDIADLDGANAFTKFLTITLPSLKRTIAFVFITSFVFTWNNFYPIYVLTGGGPGISTETFIVYAYQEAFSYNNFALAAAWSIISTIFVIVLGIIVIKYTRILDSFT	Download Alignment We filter this alignment to remove sites that have many gaps before running GREMLIN. Date: 2015_01
Length:	297 (254)
Sequences:	69986 (45662)
Seq/√Len:	2865.1

ECOLI - YCJO POTH YDCU UGPA MALG THIP YCJP PSTC CYST MALF POTB UGPE YDCV PSTA POTI YNJC POTC CYSW MODB PHNE SSUC YEHY TAUC YEHW METI PROW YECS
BACSU - GANP AMYD MDXF ARAP YTEP LPLB YURN YESP GANQ MDXG YESQ ARAQ LPLC YURM AMYC YQGH YQGI YTCP YVGM SSUC YTLD OPUAB METP TCYB YXEN TCYL OPUCB OPUBD OPUBB OPUCD
HALSA - Q9HMT4 Q9HHQ7 Q9HP01 Q9HML6 Q9HP02 Q9HR05 Q9HPK3 Q9HHQ6 Q9HS11 Q9HNI9 Q9HS12
SULSO - Q97YY2 Q97UZ0 Q97ZT7 Q97UF3 Q97UF4 Q97YY3 Q97ZC2 Q97UY9 Q97ZC1 Q97VC0 Q97ZT6 Q97Z98

GREMLIN Results:

Legend: The darker and larger the blue dots, the higher coevolution strength.

Residue pairs sorted by coevolution strength:

i	j	Sco	Prob
204_T	208_T	4.225	1.00
73_K	77_I	3.180	1.00
181_Y	185_Q	3.005	1.00
39_S	59_Y	2.999	1.00
196_D	205_K	2.977	1.00
99_Q	192_Y	2.686	1.00
192_Y	210_T	2.661	1.00
195_A	205_K	2.593	1.00
70_E	73_K	2.562	1.00
201_N	204_T	2.551	1.00
71_L	254_Y	2.507	1.00
81_G	165_I	2.487	1.00
85_T	169_D	2.439	1.00
57_R	60_L	2.430	1.00
183_A	217_T	2.396	1.00
203_F	207_L	2.359	1.00
83_L	222_F	2.352	1.00
69_L	73_K	2.337	1.00
249_E	257_Q	2.308	1.00
57_R	61_I	2.271	1.00
60_L	64_Q	2.266	1.00
180_F	218_I	2.246	1.00
202_A	205_K	2.242	1.00
91_F	206_F	2.133	1.00
102_L	105_R	2.108	1.00
204_T	207_L	2.093	1.00
200_A	204_T	2.086	1.00
264_N	267_L	2.072	1.00
98_N	185_Q	1.971	1.00
176_F	221_V	1.970	1.00
184_L	214_L	1.964	1.00
191_L	213_S	1.877	1.00
87_M	222_F	1.876	1.00
195_A	200_A	1.874	1.00
90_G	176_F	1.770	1.00
79_T	226_F	1.768	1.00
91_F	214_L	1.766	1.00
37_Y	41_T	1.766	1.00
196_D	202_A	1.757	1.00
33_L	37_Y	1.743	1.00
192_Y	205_K	1.709	1.00
109_Y	181_Y	1.706	1.00
70_E	74_N	1.702	1.00
97_L	177_M	1.665	1.00
91_F	180_F	1.650	1.00
284_I	288_K	1.613	1.00
77_I	81_G	1.605	1.00
93_L	177_M	1.599	1.00
254_Y	258_E	1.582	1.00
36_V	273_I	1.554	1.00
82_S	229_T	1.544	1.00
61_I	267_L	1.527	1.00
101_D	105_R	1.519	1.00
192_Y	196_D	1.508	1.00
94_A	180_F	1.468	1.00
18_L	22_I	1.452	1.00
30_F	34_Y	1.436	1.00
104_G	107_I	1.423	1.00
211_L	218_I	1.423	1.00
98_N	181_Y	1.409	1.00
176_F	225_S	1.389	1.00
189_R	192_Y	1.385	1.00
240_T	248_T	1.370	1.00
55_G	58_N	1.364	1.00
56_L	60_L	1.364	1.00
233_F	237_Y	1.353	1.00
242_G	247_S	1.352	1.00
184_L	210_T	1.349	1.00
78_W	250_T	1.347	1.00
61_I	64_Q	1.345	1.00
180_F	221_V	1.331	1.00
99_Q	189_R	1.331	1.00
220_F	224_T	1.321	1.00
34_Y	38_I	1.317	1.00
88_S	92_V	1.299	1.00
67_Y	70_E	1.272	1.00
86_M	225_S	1.263	1.00
195_A	209_I	1.256	1.00
189_R	193_D	1.250	1.00
235_P	239_L	1.244	1.00
91_F	218_I	1.237	1.00
59_Y	273_I	1.230	1.00
233_F	256_Y	1.228	1.00
95_L	184_L	1.224	1.00
167_T	239_L	1.222	1.00
243_G	247_S	1.217	1.00
201_N	205_K	1.213	1.00
81_G	84_L	1.212	1.00
131_W	163_E	1.207	1.00
187_I	213_S	1.195	1.00
75_T	251_F	1.173	1.00
190_E	193_D	1.166	1.00
258_E	262_Y	1.153	1.00
249_E	254_Y	1.152	1.00
22_I	26_F	1.145	1.00
288_K	291_R	1.132	1.00
84_L	88_S	1.124	1.00
164_L	236_I	1.122	1.00
107_I	110_A	1.117	1.00
45_L	53_Y	1.109	1.00
258_E	264_N	1.094	1.00
165_I	169_D	1.093	1.00
215_K	219_A	1.090	1.00
35_S	273_I	1.086	1.00
87_M	218_I	1.086	1.00
180_F	217_T	1.085	1.00
74_N	77_I	1.085	1.00
63_F	69_L	1.082	1.00
179_V	221_V	1.082	1.00
13_S	17_I	1.081	1.00
173_F	177_M	1.078	1.00
107_I	111_I	1.068	1.00
257_Q	261_S	1.063	1.00
213_S	216_R	1.056	1.00
95_L	206_F	1.046	1.00
81_G	85_T	1.044	1.00
12_F	16_Y	1.038	1.00
15_F	19_P	1.025	1.00
82_S	86_M	1.024	1.00
285_I	289_Y	1.024	1.00
98_N	184_L	1.024	1.00
72_L	251_F	1.018	1.00
92_V	96_I	1.017	1.00
95_L	202_A	1.012	1.00
82_S	168_N	1.011	1.00
250_T	253_V	1.011	1.00
192_Y	202_A	1.007	1.00
232_N	236_I	1.006	1.00
162_I	166_A	1.003	1.00
200_A	205_K	1.002	1.00
76_L	80_I	1.001	1.00
105_R	185_Q	1.000	1.00
236_I	250_T	0.989	1.00
136_G	139_N	0.982	1.00
168_N	229_T	0.976	1.00
85_T	165_I	0.975	1.00
249_E	253_V	0.972	1.00
242_G	248_T	0.970	1.00
42_N	45_L	0.965	1.00
205_K	208_T	0.965	1.00
183_A	214_L	0.946	1.00
103_K	106_S	0.945	1.00
232_N	235_P	0.942	1.00
50_T	53_Y	0.938	1.00
14_L	18_L	0.935	1.00
127_W	239_L	0.933	1.00
77_I	162_I	0.926	1.00
141_L	248_T	0.922	1.00
68_F	271_W	0.916	1.00
34_Y	37_Y	0.911	1.00
254_Y	271_W	0.910	1.00
113_I	178_T	0.910	1.00
215_K	218_I	0.906	1.00
58_N	266_A	0.900	1.00
17_I	21_V	0.899	1.00
206_F	211_L	0.898	1.00
80_I	84_L	0.896	1.00
259_A	268_A	0.895	1.00
237_Y	253_V	0.894	1.00
82_S	165_I	0.892	1.00
162_I	165_I	0.892	1.00
94_A	98_N	0.890	1.00
72_L	76_L	0.889	1.00
77_I	80_I	0.884	1.00
12_F	15_F	0.883	1.00
41_T	45_L	0.883	1.00
180_F	214_L	0.882	1.00
207_L	211_L	0.880	1.00
15_F	18_L	0.876	1.00
44_S	47_H	0.873	1.00
25_V	29_V	0.873	1.00
124_I	234_Y	0.873	1.00
38_I	269_A	0.867	1.00
214_L	217_T	0.865	1.00
137_M	162_I	0.864	1.00
90_G	177_M	0.863	1.00
40_F	54_V	0.862	1.00
85_T	88_S	0.856	1.00
167_T	235_P	0.853	1.00
62_I	274_I	0.852	1.00
84_L	222_F	0.851	1.00
176_F	180_F	0.849	1.00
65_Y	69_L	0.844	1.00
61_I	65_Y	0.842	1.00
191_L	209_I	0.832	1.00
94_A	177_M	0.830	1.00
106_S	109_Y	0.828	1.00
94_A	184_L	0.819	1.00
61_I	264_N	0.815	1.00
225_S	229_T	0.813	1.00
138_M	141_L	0.813	1.00
120_G	171_L	0.812	1.00
81_G	169_D	0.809	1.00
86_M	90_G	0.807	1.00
78_W	168_N	0.806	1.00
38_I	41_T	0.806	1.00
39_S	43_L	0.805	1.00
254_Y	257_Q	0.800	1.00
285_I	288_K	0.793	1.00
205_K	210_T	0.793	1.00
73_K	76_L	0.791	1.00
30_F	33_L	0.790	1.00
97_L	109_Y	0.790	1.00
97_L	108_F	0.789	1.00
38_I	42_N	0.788	1.00
206_F	210_T	0.781	1.00
35_S	269_A	0.781	1.00
124_I	238_V	0.778	1.00
187_I	214_L	0.778	1.00
127_W	167_T	0.775	1.00
40_F	55_G	0.772	1.00
163_E	167_T	0.771	1.00
256_Y	260_F	0.768	1.00
258_E	271_W	0.765	1.00
96_I	102_L	0.765	1.00
180_F	184_L	0.759	1.00
267_L	271_W	0.751	1.00
243_G	249_E	0.749	1.00
281_V	285_I	0.749	1.00
279_V	283_G	0.748	1.00
200_A	208_T	0.747	1.00
113_I	116_W	0.746	1.00
71_L	74_N	0.745	1.00
269_A	273_I	0.745	1.00
90_G	180_F	0.743	1.00
202_A	206_F	0.742	1.00
163_E	239_L	0.740	1.00
79_T	83_L	0.737	1.00
189_R	196_D	0.734	1.00
134_P	137_M	0.731	1.00
83_L	226_F	0.727	1.00
87_M	180_F	0.727	1.00
75_T	252_I	0.726	1.00
86_M	172_S	0.725	1.00
255_A	271_W	0.725	1.00
19_P	22_I	0.724	1.00
258_E	267_L	0.721	1.00
139_N	242_G	0.721	1.00
86_M	176_F	0.719	1.00
42_N	52_S	0.714	1.00
137_M	140_R	0.713	1.00
215_K	289_Y	0.712	1.00
236_I	253_V	0.710	1.00
16_Y	20_I	0.707	1.00
60_L	63_F	0.705	1.00
27_L	31_P	0.704	1.00
43_L	47_H	0.704	1.00
54_V	57_R	0.699	1.00
240_T	249_E	0.698	1.00
62_I	267_L	0.695	1.00
218_I	221_V	0.694	1.00
269_A	272_S	0.688	1.00
137_M	141_L	0.688	1.00
83_L	87_M	0.688	1.00
210_T	213_S	0.686	1.00
35_S	272_S	0.685	1.00
71_L	251_F	0.684	1.00
45_L	52_S	0.682	1.00
97_L	181_Y	0.677	1.00
69_L	72_L	0.674	1.00
286_V	289_Y	0.674	1.00
101_D	106_S	0.673	1.00
120_G	234_Y	0.671	1.00
24_T	28_F	0.666	1.00
56_L	59_Y	0.664	1.00
164_L	168_N	0.664	1.00
53_Y	56_L	0.655	1.00
42_N	53_Y	0.654	1.00
232_N	250_T	0.653	1.00
93_L	173_F	0.652	1.00
16_Y	19_P	0.650	1.00
252_I	275_S	0.649	1.00
41_T	51_Y	0.648	1.00
78_W	165_I	0.647	1.00
194_I	198_D	0.639	1.00
253_V	257_Q	0.639	1.00
55_G	59_Y	0.635	1.00
116_W	174_P	0.634	1.00
179_V	217_T	0.633	1.00
123_S	170_W	0.633	1.00
218_I	222_F	0.632	1.00
251_F	275_S	0.630	1.00
66_G	70_E	0.629	1.00
164_L	240_T	0.628	1.00
86_M	229_T	0.628	1.00
102_L	108_F	0.627	1.00
89_L	169_D	0.624	1.00
78_W	164_L	0.618	1.00
109_Y	178_T	0.618	1.00
172_S	225_S	0.617	1.00
201_N	207_L	0.615	1.00
129_G	134_P	0.612	1.00
172_S	228_F	0.611	1.00
25_V	28_F	0.606	1.00
58_N	61_I	0.606	1.00
66_G	69_L	0.605	1.00
116_W	175_Y	0.604	1.00
104_G	108_F	0.603	1.00
217_T	221_V	0.596	1.00
75_T	230_W	0.596	1.00
59_Y	270_A	0.595	1.00
96_I	100_T	0.593	1.00
194_I	197_L	0.591	1.00
135_Y	138_M	0.590	1.00
253_V	256_Y	0.590	1.00
41_T	53_Y	0.588	1.00
234_Y	238_V	0.586	1.00
227_V	231_N	0.585	1.00
112_L	174_P	0.585	1.00
205_K	209_I	0.584	1.00
127_W	130_L	0.583	1.00
248_T	252_I	0.583	1.00
39_S	270_A	0.581	1.00
36_V	40_F	0.581	1.00
83_L	229_T	0.579	1.00
131_W	138_M	0.578	1.00
62_I	271_W	0.578	1.00
31_P	35_S	0.577	1.00
135_Y	140_R	0.576	1.00
121_F	238_V	0.574	1.00
93_L	112_L	0.571	1.00
120_G	124_I	0.571	1.00
21_V	25_V	0.570	1.00
118_F	122_I	0.568	1.00
79_T	229_T	0.568	1.00
20_I	24_T	0.567	1.00
280_I	284_I	0.564	1.00
133_D	136_G	0.563	1.00
77_I	165_I	0.563	1.00
187_I	192_Y	0.563	1.00
86_M	169_D	0.562	1.00
39_S	273_I	0.560	1.00
255_A	272_S	0.560	1.00
26_F	30_F	0.560	1.00
130_L	138_M	0.557	1.00
275_S	279_V	0.556	1.00
94_A	181_Y	0.553	1.00
41_T	52_S	0.553	1.00
82_S	169_D	0.551	1.00
219_A	222_F	0.550	1.00
103_K	107_I	0.550	1.00
50_T	54_V	0.546	1.00
87_M	91_F	0.545	1.00
108_F	112_L	0.544	1.00
31_P	38_I	0.543	1.00
228_F	231_N	0.542	1.00
53_Y	57_R	0.540	1.00
78_W	82_S	0.539	1.00
101_D	189_R	0.538	1.00
31_P	39_S	0.538	1.00
284_I	287_I	0.538	1.00
128_Q	133_D	0.537	1.00
86_M	173_F	0.536	1.00
267_L	270_A	0.535	1.00
79_T	230_W	0.535	1.00
278_F	281_V	0.534	1.00
51_Y	54_V	0.534	1.00
14_L	17_I	0.534	1.00
77_I	141_L	0.527	1.00
266_A	269_A	0.526	1.00
168_N	232_N	0.526	1.00
38_I	43_L	0.526	1.00
18_L	21_V	0.526	1.00
100_T	202_A	0.521	1.00
87_M	92_V	0.521	1.00
67_Y	249_E	0.520	1.00
265_F	268_A	0.520	1.00
93_L	96_I	0.520	1.00
89_L	173_F	0.519	1.00
265_F	269_A	0.516	1.00
106_S	110_A	0.515	1.00
31_P	36_V	0.511	1.00
193_D	196_D	0.511	1.00
29_V	33_L	0.510	1.00
282_L	286_V	0.509	1.00
110_A	114_L	0.509	1.00
63_F	274_I	0.508	1.00
97_L	102_L	0.504	1.00
214_L	218_I	0.504	1.00
243_G	248_T	0.501	1.00
221_V	225_S	0.500	1.00

Legend: The i and j are positions as given in the UniProt sequence. Only predictions with Prob ≥ 0.7 are listed. For all 3L/2 predictions, click on one of the links below.

Sco = ((raw_sco - min_sco)/(avg_sco - min_sco))/2 + 0.5
Prob = P(contact | Sco, seq80/√len)
seq80 = effective number of sequences, after reducing redundancy to 80% identity

Text file of predictions (all 3L/2 predictions)
Generate restraints for ROSETTA Structure Modeling
Upload PDB model overlay contacts on the model

HHsearch Results:

Legend: GREMLIN results (Prob ≥ 0.7) overlaid on top PDB hits. The grey/red filled circles underneath are pdb residue contacts (min distance < 5 Angstroms). The shade of the circles is based on the top 10 (or top 20 if e-value < 1E-20) HHsearch results which uses the overall probability and per-site alignment prob. Inter oligomeric contacts in the pdb are in shades of red.

PDB	Chains	Cov	%	HHΔ
4tquM	1	0.9461	100	0.288	Contact Map
2onkC	2	0.8451	100	0.325	Contact Map
3rlfF	1	0.9394	100	0.326	Contact Map
3d31C	2	0.835	100	0.34	Contact Map
3rlfG	1	0.899	100	0.363	Contact Map
4tquN	1	0.8855	100	0.37	Contact Map
4ymuD	2	0.7205	99.9	0.515	Contact Map
3tuiA	2	0.7003	99.9	0.539	Contact Map
2a65A	2	0.798	14	0.947	Contact Map
2m20A	2	0.1246	6	0.955	Contact Map

Sequence Conservation (Image Generated using WebLogo v3)

Legend: Color is used to show Hydrophobicity (Blue: Hydrophilic, Green: Neutral and Black: Hydrophobic). Amount of gaps is represented by width.

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