Q97YW3 - SULSO - GREMLIN Contacts

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Q97YW3 - Phytoene dehydrogenase related protein

UniProt:	Q97YW3	Sequences: MRYDVIIIGAGHNGLVSSIYLAQKGLKVLVIEARDRPGGMADTAEYKGVKYSRASYVLGLFPKRIQEELGIVFPTIDSDIADVFVTEEGKVVNIWRNKEKRLEELKRLGQYKYPKMEELLFKIKEKIEQEMQYVIKPPSFEDFKKAVEGTELEIFTQPSRKFLNEYLDEEFQPYFSYGFMYDLPAYVVAYYFSLDWKIVKGGMGKVGEMLMSRARQLGVDFLFNTKISEIVIKDNVATGVRTDNDKIVESKIVINAASPVLLNKLTNGLLKVHHPEFRPRWKRDTLVLRELPNLPDYMRSHLDTLFTLPIGEVTIPSAVDNSLGGHVMTIMGSYEEAKEFFPDLEKKVIYIDRLDAYKLEREYNAPYGDMNHMPMYTEYLFDGRPVKGWGYATPIKNLYITGSGTYPGGQVTGVPGRNAAMKIMTDLGIE	Download Alignment We filter this alignment to remove sites that have many gaps before running GREMLIN. Date: 2015_01
Length:	430 (395)
Sequences:	16140 (13548)
Seq/√Len:	681.7

ECOLI - GLF
BACSU - YOBN PPOX
HALSA - Q9HPD8 Q9HP88 Q9HSE1 Q9HRU3 Q9HP54 Q9HRN2
SULSO - Q97YW3 Q97W24 Q97UT6

GREMLIN Results:

Legend: The darker and larger the blue dots, the higher coevolution strength.

Residue pairs sorted by coevolution strength:

i	j	Sco	Prob
4_D	27_K	4.367	1.00
214_A	219_V	3.874	1.00
29_L	222_L	3.723	1.00
6_I	250_S	3.638	1.00
33_A	226_K	3.536	1.00
4_D	251_K	3.387	1.00
37_P	223_F	3.350	1.00
229_E	241_R	3.290	1.00
74_P	200_K	3.119	1.00
37_P	211_M	3.013	1.00
17_S	254_I	2.924	1.00
31_I	248_V	2.865	1.00
241_R	247_I	2.755	1.00
6_I	31_I	2.676	1.00
205_K	208_E	2.669	1.00
35_D	224_N	2.633	1.00
255_N	262_L	2.617	1.00
231_V	241_R	2.592	1.00
6_I	248_V	2.522	1.00
231_V	239_G	2.515	1.00
239_G	247_I	2.489	1.00
228_S	243_D	2.471	1.00
416_G	420_A	2.438	1.00
27_K	220_D	2.423	1.00
225_T	242_T	2.371	1.00
204_G	208_E	2.333	1.00
10_A	37_P	2.319	1.00
226_K	243_D	2.313	1.00
6_I	240_V	2.291	1.00
242_T	248_V	2.258	1.00
252_I	399_Y	2.237	1.00
211_M	215_R	2.221	1.00
325_G	328_M	2.187	1.00
8_I	255_N	2.181	1.00
31_I	250_S	2.176	1.00
76_I	200_K	2.168	1.00
309_P	313_V	2.166	1.00
256_A	401_T	2.128	1.00
5_V	26_L	2.103	1.00
20_Y	417_R	2.084	1.00
229_E	267_N	1.967	1.00
45_E	50_K	1.960	1.00
31_I	222_L	1.957	1.00
68_E	71_I	1.955	1.00
222_L	225_T	1.950	1.00
309_P	312_E	1.944	1.00
211_M	221_F	1.924	1.00
311_G	315_I	1.905	1.00
309_P	314_T	1.881	1.00
311_G	314_T	1.876	1.00
222_L	248_V	1.867	1.00
285_T	291_L	1.841	1.00
13_N	256_A	1.836	1.00
4_D	29_L	1.827	1.00
209_M	212_S	1.819	1.00
43_T	50_K	1.792	1.00
16_V	413_G	1.781	1.00
239_G	249_E	1.774	1.00
8_I	257_A	1.756	1.00
20_Y	23_Q	1.750	1.00
36_R	42_D	1.736	1.00
228_S	241_R	1.733	1.00
291_L	294_L	1.728	1.00
312_E	315_I	1.719	1.00
338_K	343_D	1.714	1.00
331_M	335_E	1.691	1.00
314_T	317_S	1.664	1.00
160_R	164_N	1.647	1.00
102_L	117_E	1.644	1.00
19_I	213_R	1.642	1.00
254_I	423_I	1.630	1.00
338_K	345_E	1.599	1.00
308_L	311_G	1.596	1.00
310_I	314_T	1.593	1.00
24_K	424_M	1.571	1.00
104_E	107_R	1.542	1.00
26_L	424_M	1.538	1.00
64_R	68_E	1.532	1.00
231_V	247_I	1.526	1.00
225_T	244_N	1.517	1.00
309_P	315_I	1.507	1.00
20_Y	421_M	1.504	1.00
401_T	419_A	1.495	1.00
118_E	122_K	1.486	1.00
18_S	30_V	1.477	1.00
5_V	252_I	1.468	1.00
64_R	417_R	1.456	1.00
327_V	331_M	1.444	1.00
114_P	118_E	1.433	1.00
222_L	246_K	1.422	1.00
227_I	240_V	1.421	1.00
14_G	256_A	1.419	1.00
257_A	262_L	1.418	1.00
29_L	250_S	1.412	1.00
29_L	220_D	1.401	1.00
37_P	221_F	1.394	1.00
37_P	207_G	1.374	1.00
41_A	207_G	1.367	1.00
115_K	119_L	1.358	1.00
40_M	403_S	1.347	1.00
97_N	100_K	1.337	1.00
285_T	289_R	1.330	1.00
142_D	145_K	1.329	1.00
348_V	351_I	1.327	1.00
257_A	265_L	1.327	1.00
312_E	316_P	1.326	1.00
335_E	338_K	1.324	1.00
310_I	316_P	1.323	1.00
349_I	352_D	1.322	1.00
5_V	21_L	1.320	1.00
215_R	220_D	1.320	1.00
399_Y	419_A	1.318	1.00
45_E	204_G	1.317	1.00
311_G	316_P	1.313	1.00
412_T	416_G	1.289	1.00
31_I	227_I	1.276	1.00
141_E	149_G	1.269	1.00
332_G	335_E	1.259	1.00
212_S	215_R	1.247	1.00
7_I	18_S	1.246	1.00
285_T	293_N	1.246	1.00
334_Y	338_K	1.234	1.00
208_E	212_S	1.230	1.00
6_I	29_L	1.216	1.00
285_T	288_L	1.212	1.00
311_G	317_S	1.209	1.00
29_L	248_V	1.208	1.00
67_E	72_V	1.207	1.00
22_A	219_V	1.191	1.00
230_I	255_N	1.191	1.00
233_K	249_E	1.187	1.00
4_D	26_L	1.183	1.00
22_A	28_V	1.178	1.00
285_T	295_P	1.177	1.00
19_I	23_Q	1.172	1.00
23_Q	68_E	1.170	1.00
66_Q	71_I	1.164	1.00
215_R	219_V	1.156	1.00
238_T	397_N	1.154	1.00
419_A	422_K	1.153	1.00
30_V	221_F	1.152	1.00
328_M	332_G	1.144	1.00
233_K	236_V	1.121	1.00
242_T	246_K	1.119	1.00
214_A	221_F	1.117	1.00
405_T	418_N	1.113	1.00
45_E	48_G	1.113	1.00
310_I	315_I	1.111	1.00
250_S	253_V	1.110	1.00
330_I	351_I	1.109	1.00
365_A	368_G	1.108	1.00
287_V	291_L	1.107	1.00
374_P	377_T	1.105	1.00
308_L	314_T	1.104	1.00
13_N	401_T	1.102	1.00
252_I	397_N	1.098	1.00
158_P	161_K	1.095	1.00
19_I	210_L	1.093	1.00
20_Y	416_G	1.091	1.00
144_K	148_E	1.086	1.00
328_M	331_M	1.086	1.00
64_R	70_G	1.082	1.00
336_E	339_E	1.081	1.00
275_P	279_P	1.081	1.00
299_R	307_T	1.081	1.00
115_K	118_E	1.076	1.00
335_E	345_E	1.072	1.00
372_H	375_M	1.071	1.00
292_P	295_P	1.068	1.00
285_T	296_D	1.065	1.00
172_Q	175_F	1.064	1.00
291_L	295_P	1.064	1.00
259_P	404_G	1.063	1.00
252_I	423_I	1.062	1.00
399_Y	423_I	1.061	1.00
399_Y	422_K	1.058	1.00
288_L	291_L	1.057	1.00
119_L	122_K	1.054	1.00
68_E	72_V	1.052	1.00
205_K	209_M	1.050	1.00
141_E	145_K	1.049	1.00
20_Y	68_E	1.046	1.00
308_L	312_E	1.042	1.00
312_E	317_S	1.042	1.00
208_E	211_M	1.039	1.00
7_I	28_V	1.032	1.00
164_N	172_Q	1.028	1.00
330_I	334_Y	1.028	1.00
285_T	290_E	1.028	1.00
201_G	205_K	1.026	1.00
199_V	206_V	1.025	1.00
258_S	261_L	1.023	1.00
22_A	214_A	1.018	1.00
285_T	294_L	1.014	1.00
191_Y	195_D	1.014	1.00
113_Y	117_E	1.012	1.00
185_A	191_Y	1.011	1.00
44_A	53_R	1.008	1.00
189_A	192_F	1.004	1.00
21_L	420_A	1.002	1.00
230_I	253_V	1.000	1.00
31_I	225_T	0.995	1.00
13_N	415_P	0.990	1.00
4_D	248_V	0.989	1.00
310_I	313_V	0.989	1.00
309_P	316_P	0.987	1.00
99_E	102_L	0.986	1.00
118_E	121_F	0.985	1.00
31_I	242_T	0.977	1.00
288_L	292_P	0.970	1.00
418_N	422_K	0.968	1.00
232_I	238_T	0.968	1.00
289_R	294_L	0.968	1.00
285_T	292_P	0.967	1.00
330_I	333_S	0.965	1.00
190_Y	194_L	0.958	1.00
391_Y	394_P	0.958	1.00
373_M	376_Y	0.957	1.00
343_D	346_K	0.957	1.00
233_K	239_G	0.956	1.00
278_R	281_W	0.953	1.00
407_P	410_Q	0.951	1.00
83_V	93_N	0.948	1.00
112_K	115_K	0.948	1.00
369_D	374_P	0.948	1.00
288_L	294_L	0.940	1.00
335_E	339_E	0.939	1.00
242_T	245_D	0.938	1.00
308_L	316_P	0.937	1.00
371_N	377_T	0.937	1.00
293_N	296_D	0.933	1.00
100_K	103_E	0.931	1.00
364_N	367_Y	0.930	1.00
225_T	248_V	0.930	1.00
121_F	124_K	0.929	1.00
312_E	318_A	0.926	1.00
95_W	100_K	0.918	1.00
34_R	362_E	0.915	1.00
65_I	70_G	0.914	1.00
211_M	223_F	0.910	1.00
276_E	279_P	0.908	1.00
12_H	41_A	0.908	1.00
236_V	239_G	0.902	1.00
371_N	375_M	0.901	1.00
313_V	317_S	0.898	1.00
192_F	195_D	0.896	1.00
176_S	180_M	0.893	1.00
255_N	398_L	0.892	1.00
395_I	398_L	0.889	1.00
64_R	67_E	0.887	1.00
19_I	68_E	0.883	1.00
191_Y	194_L	0.883	1.00
368_G	371_N	0.881	1.00
293_N	297_Y	0.881	1.00
227_I	242_T	0.876	1.00
290_E	293_N	0.876	1.00
375_M	380_L	0.874	1.00
372_H	376_Y	0.868	1.00
414_V	418_N	0.868	1.00
405_T	415_P	0.867	1.00
19_I	214_A	0.861	1.00
376_Y	379_Y	0.861	1.00
114_P	117_E	0.858	1.00
20_Y	24_K	0.857	1.00
331_M	345_E	0.855	1.00
289_R	293_N	0.855	1.00
230_I	240_V	0.854	1.00
318_A	321_N	0.852	1.00
286_L	289_R	0.852	1.00
308_L	313_V	0.850	1.00
368_G	372_H	0.849	1.00
114_P	119_L	0.849	1.00
32_E	223_F	0.849	1.00
185_A	188_V	0.846	1.00
162_F	166_Y	0.844	1.00
373_M	377_T	0.844	1.00
236_V	249_E	0.840	1.00
10_A	30_V	0.840	1.00
294_L	297_Y	0.832	1.00
23_Q	213_R	0.827	1.00
278_R	282_K	0.824	1.00
95_W	104_E	0.823	1.00
187_V	191_Y	0.820	1.00
186_Y	190_Y	0.815	1.00
313_V	316_P	0.815	1.00
40_M	54_A	0.814	1.00
263_N	279_P	0.812	1.00
417_R	421_M	0.809	1.00
324_G	328_M	0.809	1.00
167_L	175_F	0.808	1.00
291_L	296_D	0.807	1.00
266_T	270_L	0.807	1.00
175_F	178_G	0.806	1.00
13_N	412_T	0.803	1.00
12_H	412_T	0.803	1.00
29_L	251_K	0.803	1.00
233_K	238_T	0.800	1.00
295_P	298_M	0.799	1.00
326_H	358_K	0.799	1.00
347_K	351_I	0.795	1.00
290_E	295_P	0.794	1.00
159_S	169_E	0.794	1.00
213_R	216_Q	0.793	1.00
139_S	142_D	0.788	1.00
124_K	128_E	0.787	1.00
188_V	192_F	0.786	1.00
4_D	249_E	0.785	1.00
289_R	292_P	0.782	1.00
172_Q	176_S	0.781	1.00
10_A	223_F	0.779	1.00
326_H	329_T	0.777	1.00
337_A	341_F	0.776	1.00
238_T	253_V	0.775	1.00
17_S	416_G	0.774	1.00
181_Y	184_P	0.774	1.00
308_L	315_I	0.773	1.00
419_A	423_I	0.773	1.00
261_L	264_K	0.773	1.00
287_V	290_E	0.770	1.00
43_T	204_G	0.767	1.00
187_V	195_D	0.767	1.00
190_Y	193_S	0.765	1.00
147_V	151_E	0.764	1.00
115_K	122_K	0.763	1.00
310_I	317_S	0.762	1.00
289_R	296_D	0.761	1.00
77_D	197_K	0.760	1.00
232_I	397_N	0.759	1.00
103_E	107_R	0.758	1.00
290_E	294_L	0.754	1.00
174_Y	178_G	0.754	1.00
276_E	280_R	0.751	1.00
100_K	104_E	0.749	1.00
177_Y	180_M	0.748	1.00
116_M	119_L	0.746	1.00
254_I	419_A	0.744	1.00
228_S	242_T	0.742	1.00
368_G	373_M	0.741	1.00
370_M	374_P	0.739	1.00
289_R	295_P	0.737	1.00
207_G	211_M	0.736	1.00
278_R	283_R	0.736	1.00
117_E	121_F	0.730	1.00
15_L	214_A	0.729	1.00
314_T	318_A	0.727	1.00
52_S	203_M	0.727	1.00
99_E	103_E	0.727	1.00
376_Y	380_L	0.723	1.00
286_L	290_E	0.723	1.00
99_E	105_L	0.723	1.00
286_L	291_L	0.721	1.00
189_A	194_L	0.719	1.00
232_I	398_L	0.719	1.00
327_V	330_I	0.717	1.00
366_P	372_H	0.714	1.00
402_G	415_P	0.714	1.00
408_G	411_V	0.714	1.00
370_M	373_M	0.712	1.00
16_V	20_Y	0.710	1.00
170_E	173_P	0.710	1.00
157_Q	165_E	0.706	1.00
226_K	264_K	0.705	1.00
12_H	413_G	0.704	1.00
334_Y	337_A	0.704	1.00
103_E	106_K	0.703	1.00
102_L	106_K	0.702	1.00
27_K	251_K	0.701	1.00
4_D	250_S	0.701	1.00
279_P	282_K	0.701	1.00
189_A	193_S	0.700	1.00
143_F	146_A	0.699	1.00
157_Q	162_F	0.695	1.00
390_G	393_T	0.695	1.00
370_M	375_M	0.694	1.00
315_I	318_A	0.689	1.00
171_F	175_F	0.689	1.00
225_T	246_K	0.688	1.00
292_P	296_D	0.687	1.00
162_F	165_E	0.685	1.00
166_Y	169_E	0.685	1.00
69_L	72_V	0.685	1.00
231_V	267_N	0.685	1.00
366_P	369_D	0.685	1.00
337_A	344_L	0.681	1.00
161_K	165_E	0.681	1.00
34_R	42_D	0.681	1.00
22_A	220_D	0.680	1.00
392_A	422_K	0.679	1.00
287_V	292_P	0.678	1.00
317_S	320_D	0.677	1.00
315_I	321_N	0.675	1.00
348_V	353_R	0.675	1.00
113_Y	116_M	0.675	1.00
236_V	396_K	0.673	1.00
67_E	70_G	0.672	1.00
288_L	293_N	0.671	1.00
228_S	244_N	0.670	1.00
49_V	349_I	0.669	1.00
78_S	81_A	0.664	1.00
232_I	395_I	0.662	1.00
368_G	375_M	0.661	1.00
125_E	128_E	0.661	1.00
365_A	370_M	0.659	1.00
171_F	174_Y	0.656	1.00
102_L	108_L	0.656	1.00
364_N	368_G	0.655	1.00
287_V	293_N	0.655	1.00
187_V	194_L	0.654	1.00
12_H	16_V	0.653	1.00
158_P	163_L	0.652	1.00
12_H	207_G	0.650	1.00
46_Y	352_D	0.649	1.00
122_K	125_E	0.648	1.00
228_S	231_V	0.647	1.00
67_E	71_I	0.647	1.00
333_S	336_E	0.647	1.00
26_L	29_L	0.646	1.00
292_P	297_Y	0.646	1.00
155_F	158_P	0.645	1.00
121_F	125_E	0.644	1.00
365_A	371_N	0.643	1.00
26_L	251_K	0.642	1.00
366_P	370_M	0.640	1.00
7_I	14_G	0.639	1.00
147_V	150_T	0.638	1.00
146_A	150_T	0.637	1.00
36_R	204_G	0.633	1.00
16_V	416_G	0.632	1.00
163_L	167_L	0.631	1.00
66_Q	69_L	0.630	1.00
271_K	395_I	0.628	1.00
308_L	317_S	0.627	1.00
331_M	334_Y	0.627	1.00
171_F	178_G	0.626	1.00
127_I	130_E	0.625	1.00
309_P	317_S	0.624	1.00
18_S	214_A	0.624	1.00
65_I	68_E	0.623	1.00
358_K	361_R	0.623	1.00
365_A	372_H	0.622	1.00
332_G	336_E	0.621	1.00
316_P	321_N	0.621	1.00
185_A	192_F	0.621	1.00
55_S	203_M	0.620	1.00
272_V	276_E	0.619	1.00
238_T	242_T	0.618	1.00
329_T	332_G	0.618	1.00
187_V	190_Y	0.617	1.00
126_K	130_E	0.616	1.00
74_P	77_D	0.616	1.00
312_E	321_N	0.615	1.00
338_K	341_F	0.612	1.00
122_K	126_K	0.609	1.00
91_V	94_I	0.609	1.00
16_V	210_L	0.608	1.00
52_S	57_V	0.608	1.00
314_T	319_V	0.608	1.00
175_F	179_F	0.607	1.00
274_H	277_F	0.605	1.00
212_S	216_Q	0.605	1.00
113_Y	118_E	0.605	1.00
168_D	176_S	0.603	1.00
407_P	411_V	0.603	1.00
275_P	282_K	0.601	1.00
199_V	205_K	0.600	1.00
158_P	162_F	0.597	1.00
364_N	370_M	0.597	1.00
157_Q	161_K	0.596	1.00
41_A	55_S	0.594	1.00
287_V	294_L	0.594	1.00
420_A	423_I	0.593	1.00
369_D	372_H	0.592	1.00
167_L	170_E	0.591	1.00
238_T	398_L	0.591	1.00
98_K	101_R	0.591	1.00
338_K	344_L	0.590	1.00
372_H	379_Y	0.590	1.00
342_P	345_E	0.588	1.00
350_Y	353_R	0.588	1.00
78_S	82_D	0.588	1.00
143_F	147_V	0.588	1.00
186_Y	189_A	0.588	1.00
133_Y	136_K	0.588	1.00
253_V	397_N	0.587	1.00
98_K	102_L	0.584	1.00
346_K	349_I	0.583	1.00
203_M	411_V	0.582	1.00
185_A	190_Y	0.582	1.00
330_I	353_R	0.579	1.00
274_H	394_P	0.578	1.00
317_S	321_N	0.578	1.00
326_H	330_I	0.577	1.00
347_K	350_Y	0.573	1.00
113_Y	119_L	0.572	1.00
288_L	296_D	0.572	1.00
309_P	318_A	0.572	1.00
286_L	292_P	0.572	1.00
59_G	196_W	0.571	1.00
119_L	123_I	0.571	1.00
403_S	412_T	0.571	1.00
161_K	166_Y	0.570	1.00
156_T	159_S	0.568	1.00
286_L	296_D	0.567	1.00
331_M	351_I	0.567	1.00
186_Y	192_F	0.566	1.00
189_A	195_D	0.566	1.00
372_H	377_T	0.565	1.00
169_E	173_P	0.563	1.00
73_F	76_I	0.563	1.00
166_Y	170_E	0.563	1.00
240_V	253_V	0.562	1.00
55_S	59_G	0.561	1.00
259_P	281_W	0.560	1.00
163_L	176_S	0.560	1.00
18_S	219_V	0.559	1.00
393_T	400_I	0.558	1.00
167_L	176_S	0.557	1.00
338_K	346_K	0.557	1.00
370_M	377_T	0.557	1.00
368_G	374_P	0.556	1.00
80_I	83_V	0.556	1.00
228_S	245_D	0.554	1.00
211_M	219_V	0.552	1.00
277_F	282_K	0.551	1.00
83_V	86_T	0.550	1.00
71_I	216_Q	0.549	1.00
114_P	121_F	0.548	1.00
226_K	365_A	0.548	1.00
209_M	213_R	0.548	1.00
254_I	399_Y	0.545	1.00
15_L	30_V	0.545	1.00
112_K	118_E	0.545	1.00
169_E	174_Y	0.544	1.00
293_N	298_M	0.544	1.00
413_G	416_G	0.544	1.00
123_I	126_K	0.541	1.00
294_L	298_M	0.539	1.00
273_H	276_E	0.539	1.00
376_Y	381_F	0.538	1.00
8_I	227_I	0.538	1.00
120_L	124_K	0.538	1.00
132_Q	136_K	0.537	1.00
173_P	178_G	0.536	1.00
15_L	207_G	0.535	1.00
239_G	242_T	0.535	1.00
17_S	419_A	0.533	1.00
140_F	145_K	0.531	1.00
10_A	32_E	0.530	1.00
117_E	122_K	0.530	1.00
357_Y	362_E	0.530	1.00
288_L	295_P	0.529	1.00
291_L	297_Y	0.528	1.00
187_V	192_F	0.528	1.00
188_V	194_L	0.525	1.00
66_Q	70_G	0.525	1.00
309_P	321_N	0.525	1.00
166_Y	175_F	0.524	1.00
75_T	78_S	0.524	1.00
163_L	169_E	0.523	1.00
271_K	274_H	0.522	1.00
367_Y	371_N	0.522	1.00
299_R	311_G	0.522	1.00
185_A	189_A	0.519	0.99
334_Y	345_E	0.519	0.99
174_Y	177_Y	0.518	0.99
124_K	127_I	0.517	0.99
290_E	334_Y	0.517	0.99
369_D	373_M	0.517	0.99
73_F	80_I	0.517	0.99
377_T	380_L	0.516	0.99
116_M	120_L	0.515	0.99
348_V	352_D	0.515	0.99
371_N	376_Y	0.514	0.99
64_R	72_V	0.514	0.99
322_S	326_H	0.514	0.99
208_E	215_R	0.511	0.99
114_P	122_K	0.511	0.99
358_K	362_E	0.508	0.99
42_D	53_R	0.508	0.99
324_G	329_T	0.508	0.99
102_L	105_L	0.506	0.99
43_T	52_S	0.506	0.99
118_E	124_K	0.506	0.99
164_N	168_D	0.505	0.99
176_S	179_F	0.505	0.99
101_R	104_E	0.504	0.99
313_V	318_A	0.504	0.99
258_S	366_P	0.503	0.99
188_V	191_Y	0.502	0.99
315_I	319_V	0.502	0.99
140_F	146_A	0.501	0.99
65_I	69_L	0.500	0.99

Legend: The i and j are positions as given in the UniProt sequence. Only predictions with Prob ≥ 0.7 are listed. For all 3L/2 predictions, click on one of the links below.

Sco = ((raw_sco - min_sco)/(avg_sco - min_sco))/2 + 0.5
Prob = P(contact | Sco, seq80/√len)
seq80 = effective number of sequences, after reducing redundancy to 80% identity

Text file of predictions (all 3L/2 predictions)
Generate restraints for ROSETTA Structure Modeling
Upload PDB model overlay contacts on the model

HHsearch Results:

Legend: GREMLIN results (Prob ≥ 0.7) overlaid on top PDB hits. The grey/red filled circles underneath are pdb residue contacts (min distance < 5 Angstroms). The shade of the circles is based on the top 10 (or top 20 if e-value < 1E-20) HHsearch results which uses the overall probability and per-site alignment prob. Inter oligomeric contacts in the pdb are in shades of red.

PDB	Chains	Cov	%	HHΔ
4dgkA	1	0.8023	100	0.391	Contact Map
2yg5A	2	0.9442	100	0.421	Contact Map
4i59A	1	0.9395	100	0.423	Contact Map
1s3eA	2	0.9535	100	0.43	Contact Map
4repA	1	0.9767	100	0.44	Contact Map
2vvmA	2	0.9465	100	0.444	Contact Map
3i6dA	1	0.8767	100	0.46	Contact Map
1b37A	4	0.9302	100	0.464	Contact Map
3nrnA	1	0.8093	100	0.469	Contact Map
3lovA	1	0.9302	100	0.47	Contact Map

Sequence Conservation (Image Generated using WebLogo v3)

Legend: Color is used to show Hydrophobicity (Blue: Hydrophilic, Green: Neutral and Black: Hydrophobic). Amount of gaps is represented by width.

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