Q97YW0 - SULSO - GREMLIN Contacts

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Q97YW0 - Probable thymidylate kinase

UniProt:	Q97YW0	Sequences: MNILIIAFEGIEGSGKTSHLEATKKYLEKEGYGVVTFGLQMSKLIGDRIAQVKRNIIFERRTLFLAYVTDLADQIENYVKPSIDSGFIALADGYTLTLTSWGLTRGLEKEWIDDVLSMLPKPSISLPLISTPDEIVRRIIKKRGYLDPLETGIDICIKEDTFEAYIDYINRFQEALMSISSRENIIYTDKEFDEVQKEIVRRIDNITS	Download Alignment We filter this alignment to remove sites that have many gaps before running GREMLIN. Date: 2015_01
Length:	208 (194)
Sequences:	4700 (3591)
Seq/√Len:	257.8

ECOLI - KTHY
BACSU - KTHY
HALSA - KTHY
SULSO - Q97YW0 KTHY2 KTHY1

GREMLIN Results:

Legend: The darker and larger the blue dots, the higher coevolution strength.

Residue pairs sorted by coevolution strength:

i	j	Sco	Prob
183_E	191_E	3.367	1.00
26_Y	193_D	3.203	1.00
33_G	87_F	3.188	1.00
128_L	181_S	2.911	1.00
22_A	189_D	2.861	1.00
104_T	164_A	2.628	1.00
24_K	28_E	2.497	1.00
129_I	162_F	2.489	1.00
183_E	187_Y	2.342	1.00
134_E	137_R	2.176	1.00
162_F	166_I	2.159	1.00
184_N	187_Y	2.147	1.00
35_V	87_F	2.072	1.00
179_I	188_T	2.037	1.00
73_D	77_N	2.035	1.00
37_F	74_Q	1.976	1.00
20_L	90_L	1.958	1.00
20_L	36_T	1.937	1.00
32_Y	88_I	1.835	1.00
76_E	80_K	1.825	1.00
129_I	166_I	1.813	1.00
19_H	192_F	1.804	1.00
24_K	36_T	1.783	1.00
30_E	197_K	1.762	1.00
19_H	189_D	1.757	1.00
4_L	88_I	1.753	1.00
166_I	178_S	1.744	1.00
80_K	84_D	1.706	1.00
177_M	195_V	1.673	1.00
26_Y	30_E	1.661	1.00
131_T	182_R	1.643	1.00
189_D	193_D	1.614	1.00
14_S	130_S	1.611	1.00
24_K	90_L	1.571	1.00
126_L	195_V	1.558	1.00
127_P	176_L	1.556	1.00
114_D	117_S	1.538	1.00
147_D	150_E	1.523	1.00
96_L	175_A	1.494	1.00
130_S	134_E	1.483	1.00
19_H	22_A	1.477	1.00
177_M	199_I	1.464	1.00
5_I	91_A	1.456	1.00
105_R	152_G	1.443	1.00
80_K	120_P	1.423	1.00
25_K	29_K	1.387	1.00
127_P	178_S	1.342	1.00
113_D	171_R	1.341	1.00
134_E	182_R	1.341	1.00
26_Y	197_K	1.328	1.00
159_E	163_E	1.328	1.00
12_E	135_I	1.323	1.00
163_E	167_D	1.321	1.00
169_I	178_S	1.320	1.00
48_R	51_Q	1.312	1.00
7_A	91_A	1.312	1.00
23_T	196_Q	1.305	1.00
26_Y	189_D	1.304	1.00
128_L	192_F	1.300	1.00
47_D	70_D	1.295	1.00
45_I	58_F	1.291	1.00
126_L	192_F	1.291	1.00
167_D	171_R	1.274	1.00
59_E	76_E	1.274	1.00
100_S	104_T	1.255	1.00
11_I	158_K	1.250	1.00
49_I	66_A	1.243	1.00
35_V	82_S	1.239	1.00
82_S	87_F	1.222	1.00
8_F	23_T	1.218	1.00
193_D	197_K	1.217	1.00
22_A	186_I	1.209	1.00
22_A	185_I	1.200	1.00
96_L	125_S	1.199	1.00
64_F	68_V	1.194	1.00
72_A	76_E	1.158	1.00
43_K	46_G	1.157	1.00
179_I	195_V	1.156	1.00
68_V	116_L	1.155	1.00
133_D	159_E	1.154	1.00
195_V	199_I	1.144	1.00
7_A	96_L	1.138	1.00
135_I	139_I	1.136	1.00
95_T	116_L	1.133	1.00
156_C	159_E	1.133	1.00
167_D	170_N	1.132	1.00
168_Y	176_L	1.127	1.00
191_E	194_E	1.110	1.00
189_D	192_F	1.098	1.00
21_E	25_K	1.092	1.00
75_I	120_P	1.092	1.00
130_S	135_I	1.090	1.00
127_P	166_I	1.080	1.00
127_P	169_I	1.073	1.00
110_E	114_D	1.072	1.00
180_S	183_E	1.065	1.00
156_C	160_D	1.063	1.00
111_W	118_M	1.063	1.00
131_T	134_E	1.055	1.00
190_K	194_E	1.053	1.00
37_F	91_A	1.043	1.00
61_R	111_W	1.042	1.00
108_E	112_I	1.031	1.00
124_I	177_M	1.030	1.00
18_S	185_I	1.028	1.00
132_P	155_I	1.027	1.00
30_E	193_D	1.019	1.00
28_E	34_V	1.017	1.00
35_V	78_Y	1.017	1.00
113_D	117_S	1.016	1.00
36_T	90_L	1.005	1.00
9_E	97_T	1.003	1.00
68_V	95_T	1.000	1.00
195_V	198_E	0.999	1.00
191_E	195_V	0.997	1.00
67_Y	149_L	0.993	1.00
121_K	172_F	0.991	1.00
59_E	72_A	0.989	1.00
187_Y	191_E	0.987	1.00
139_I	142_K	0.975	1.00
126_L	177_M	0.975	1.00
185_I	189_D	0.975	1.00
19_H	185_I	0.973	1.00
25_K	28_E	0.972	1.00
68_V	98_L	0.970	1.00
124_I	199_I	0.969	1.00
24_K	34_V	0.967	1.00
116_L	119_L	0.944	1.00
136_V	139_I	0.943	1.00
46_G	70_D	0.942	1.00
132_P	162_F	0.927	1.00
127_P	162_F	0.924	1.00
53_K	56_I	0.918	1.00
26_Y	190_K	0.915	1.00
126_L	179_I	0.901	1.00
166_I	169_I	0.898	1.00
95_T	121_K	0.896	1.00
136_V	155_I	0.889	1.00
61_R	76_E	0.883	1.00
61_R	118_M	0.882	1.00
99_T	168_Y	0.875	1.00
96_L	176_L	0.865	1.00
79_V	89_A	0.865	1.00
26_Y	29_K	0.864	1.00
144_G	147_D	0.863	1.00
70_D	74_Q	0.852	0.99
5_I	94_Y	0.849	0.99
43_K	78_Y	0.845	0.99
194_E	197_K	0.841	0.99
105_R	157_I	0.836	0.99
124_I	195_V	0.835	0.99
130_S	181_S	0.831	0.99
17_T	21_E	0.827	0.99
33_G	85_S	0.826	0.99
22_A	25_K	0.824	0.99
194_E	198_E	0.823	0.99
113_D	172_F	0.809	0.99
155_I	159_E	0.804	0.99
129_I	178_S	0.802	0.99
78_Y	82_S	0.798	0.99
39_L	74_Q	0.797	0.99
140_I	146_L	0.789	0.99
21_E	36_T	0.778	0.99
137_R	141_K	0.775	0.99
68_V	112_I	0.772	0.99
11_I	135_I	0.769	0.99
64_F	112_I	0.767	0.99
7_A	175_A	0.763	0.99
187_Y	190_K	0.756	0.99
8_F	192_F	0.755	0.99
12_E	158_K	0.754	0.99
34_V	88_I	0.752	0.99
59_E	62_T	0.743	0.99
21_E	24_K	0.742	0.99
65_L	115_V	0.739	0.99
164_A	167_D	0.739	0.99
55_N	58_F	0.739	0.99
99_T	109_K	0.739	0.99
179_I	192_F	0.731	0.98
125_S	175_A	0.730	0.98
160_D	163_E	0.722	0.98
136_V	140_I	0.715	0.98
81_P	85_S	0.714	0.98
74_Q	91_A	0.711	0.98
126_L	196_Q	0.707	0.98
100_S	164_A	0.701	0.98
113_D	121_K	0.701	0.98
34_V	87_F	0.701	0.98
40_Q	71_L	0.699	0.98
8_F	20_L	0.697	0.98
172_F	175_A	0.692	0.98
64_F	115_V	0.692	0.98
109_K	167_D	0.690	0.98
108_E	111_W	0.681	0.97
28_E	33_G	0.677	0.97
34_V	90_L	0.673	0.97
143_R	146_L	0.668	0.97
13_G	139_I	0.667	0.97
172_F	176_L	0.666	0.97
99_T	113_D	0.666	0.97
109_K	113_D	0.666	0.97
169_I	176_L	0.662	0.97
105_R	149_L	0.661	0.97
71_L	98_L	0.656	0.97
188_T	191_E	0.656	0.97
94_Y	120_P	0.655	0.97
101_W	157_I	0.654	0.97
17_T	38_G	0.651	0.97
19_H	23_T	0.650	0.97
63_L	105_R	0.649	0.97
117_S	121_K	0.648	0.97
38_G	47_D	0.640	0.96
68_V	119_L	0.637	0.96
4_L	123_S	0.636	0.96
46_G	73_D	0.634	0.96
8_F	126_L	0.633	0.96
7_A	176_L	0.631	0.96
82_S	85_S	0.629	0.96
28_E	36_T	0.629	0.96
115_V	118_M	0.629	0.96
11_I	127_P	0.628	0.96
48_R	55_N	0.628	0.96
132_P	159_E	0.620	0.96
19_H	188_T	0.620	0.96
75_I	79_V	0.616	0.96
46_G	49_I	0.613	0.95
39_L	71_L	0.611	0.95
67_Y	70_D	0.611	0.95
62_T	72_A	0.609	0.95
4_L	199_I	0.608	0.95
62_T	69_T	0.602	0.95
110_E	113_D	0.600	0.95
6_I	123_S	0.600	0.95
8_F	128_L	0.600	0.95
53_K	58_F	0.600	0.95
31_G	34_V	0.598	0.95
5_I	83_I	0.597	0.95
98_L	112_I	0.596	0.95
140_I	144_G	0.589	0.94
19_H	181_S	0.584	0.94
41_M	50_A	0.583	0.94
67_Y	99_T	0.582	0.94
7_A	125_S	0.577	0.94
185_I	188_T	0.575	0.94
64_F	98_L	0.570	0.93
82_S	89_A	0.568	0.93
65_L	118_M	0.562	0.93
8_F	19_H	0.562	0.93
53_K	151_T	0.559	0.93
75_I	80_K	0.558	0.93
40_Q	67_Y	0.556	0.92
109_K	164_A	0.556	0.92
133_D	137_R	0.555	0.92
114_D	118_M	0.551	0.92
9_E	101_W	0.550	0.92
132_P	135_I	0.548	0.92
157_I	161_T	0.546	0.92
106_G	160_D	0.545	0.92
73_D	149_L	0.542	0.91
96_L	172_F	0.542	0.91
64_F	95_T	0.540	0.91
9_E	127_P	0.539	0.91
75_I	119_L	0.537	0.91
146_L	151_T	0.537	0.91
37_F	89_A	0.536	0.91
19_H	128_L	0.534	0.91
99_T	116_L	0.529	0.90
22_A	192_F	0.527	0.90
152_G	157_I	0.524	0.90
97_T	165_Y	0.523	0.90
59_E	73_D	0.523	0.90
14_S	135_I	0.522	0.90
133_D	155_I	0.522	0.90
98_L	102_G	0.518	0.90
168_Y	172_F	0.516	0.89
6_I	196_Q	0.514	0.89
125_S	176_L	0.514	0.89
62_T	73_D	0.514	0.89
192_F	196_Q	0.513	0.89
100_S	161_T	0.513	0.89
110_E	171_R	0.513	0.89
98_L	116_L	0.512	0.89
190_K	193_D	0.511	0.89
71_L	116_L	0.511	0.89
158_K	161_T	0.509	0.89
95_T	98_L	0.509	0.89
48_R	54_R	0.508	0.89
149_L	152_G	0.507	0.88
38_G	42_S	0.507	0.88
63_L	149_L	0.503	0.88
44_L	48_R	0.500	0.88

Legend: The i and j are positions as given in the UniProt sequence. Only predictions with Prob ≥ 0.7 are listed. For all 3L/2 predictions, click on one of the links below.

Sco = ((raw_sco - min_sco)/(avg_sco - min_sco))/2 + 0.5
Prob = P(contact | Sco, seq80/√len)
seq80 = effective number of sequences, after reducing redundancy to 80% identity

Text file of predictions (all 3L/2 predictions)
Generate restraints for ROSETTA Structure Modeling
Upload PDB model overlay contacts on the model

HHsearch Results:

Legend: GREMLIN results (Prob ≥ 0.7) overlaid on top PDB hits. The grey/red filled circles underneath are pdb residue contacts (min distance < 5 Angstroms). The shade of the circles is based on the top 10 (or top 20 if e-value < 1E-20) HHsearch results which uses the overall probability and per-site alignment prob. Inter oligomeric contacts in the pdb are in shades of red.

PDB	Chains	Cov	%	HHΔ
3czpA	2	0.8125	100	0.379	Contact Map
2plrA	2	0.9615	100	0.388	Contact Map
4edhA	2	0.976	100	0.42	Contact Map
2yogA	1	0.9038	100	0.426	Contact Map
1nn5A	2	0.9279	100	0.431	Contact Map
1p6xA	3	0.9615	100	0.442	Contact Map
4eaqA	2	0.9375	100	0.443	Contact Map
1gtvA	2	0.899	100	0.444	Contact Map
4tmkA	3	0.9567	100	0.445	Contact Map
4hlcA	2	0.9279	100	0.448	Contact Map

Sequence Conservation (Image Generated using WebLogo v3)

Legend: Color is used to show Hydrophobicity (Blue: Hydrophilic, Green: Neutral and Black: Hydrophobic). Amount of gaps is represented by width.

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