Q97YV7 - SULSO - GREMLIN Contacts

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Q97YV7 - Uncharacterized protein

UniProt:	Q97YV7	Sequences: MIFDLHPKETIEELVGREKEVEHCISQILSKNWIIIGGQREIGKTSLMKVVINEIKKREQIAGIYINLRGVRSLNSLLTILVSEINKEKISWRFKVNINFLITSAGIEIRGGSKRRVVNSLIELLNSSDEIVIAFDEVQELSFASKQFLDILGNVYATNPKVHMIFSGSYVGLVKALLSPPSDSPLHGRPPTEIRL	Download Alignment We filter this alignment to remove sites that have many gaps before running GREMLIN. Date: 2015_01
Length:	196 (162)
Sequences:	884 (736)
Seq/√Len:	57.8

SULSO - Q97YV7 Q97YJ3 Q97X37 Q97X15

GREMLIN Results:

Legend: The darker and larger the blue dots, the higher coevolution strength.

Residue pairs sorted by coevolution strength:

i	j	Sco	Prob
50_V	53_N	4.910	1.00
48_M	134_A	4.369	1.00
48_M	167_S	3.783	1.00
52_I	134_A	3.518	1.00
149_L	184_S	3.470	1.00
24_C	34_I	3.057	1.00
153_G	157_A	2.703	1.00
25_I	55_I	2.683	1.00
49_K	158_T	2.667	1.00
21_V	51_V	2.641	1.00
48_M	165_I	2.482	1.00
19_K	22_E	2.327	1.00
27_Q	34_I	2.191	1.00
33_W	166_F	2.157	1.00
157_A	189_R	2.065	1.00
139_Q	142_S	2.054	1.00
36_I	48_M	1.974	1.00
46_S	50_V	1.934	1.00
38_G	42_I	1.894	1.00
14_L	50_V	1.770	0.99
50_V	54_E	1.768	0.99
75_N	79_T	1.761	0.99
33_W	156_Y	1.681	0.99
70_G	145_S	1.638	0.99
27_Q	32_N	1.615	0.99
157_A	185_P	1.606	0.99
117_V	125_L	1.577	0.98
52_I	132_V	1.570	0.98
39_Q	42_I	1.519	0.98
114_K	117_V	1.505	0.98
154_N	158_T	1.470	0.98
38_G	189_R	1.398	0.97
52_I	165_I	1.361	0.96
18_E	22_E	1.360	0.96
36_I	134_A	1.347	0.96
133_I	162_V	1.332	0.96
87_K	124_L	1.332	0.96
52_I	60_Q	1.311	0.95
135_F	166_F	1.304	0.95
153_G	189_R	1.290	0.95
139_Q	170_Y	1.281	0.95
51_V	163_H	1.269	0.94
139_Q	177_L	1.268	0.94
38_G	188_G	1.254	0.94
114_K	118_V	1.247	0.94
25_I	29_L	1.232	0.93
45_T	140_E	1.228	0.93
118_V	122_I	1.225	0.93
84_E	87_K	1.206	0.93
24_C	47_L	1.183	0.92
14_L	33_W	1.176	0.92
62_A	65_Y	1.165	0.91
119_N	155_V	1.163	0.91
141_L	157_A	1.160	0.91
110_R	135_F	1.159	0.91
60_Q	65_Y	1.154	0.91
16_G	138_V	1.144	0.90
25_I	51_V	1.143	0.90
134_A	187_H	1.131	0.90
20_E	47_L	1.128	0.90
33_W	153_G	1.120	0.89
174_V	177_L	1.101	0.89
178_L	190_P	1.088	0.88
126_N	160_P	1.086	0.88
42_I	182_S	1.078	0.88
45_T	149_L	1.077	0.88
25_I	54_E	1.074	0.87
186_L	189_R	1.060	0.87
16_G	139_Q	1.052	0.86
154_N	186_L	1.039	0.86
16_G	173_L	1.033	0.85
159_N	164_M	1.025	0.85
92_W	95_K	1.023	0.85
60_Q	63_G	1.015	0.84
152_L	155_V	1.013	0.84
128_S	131_I	1.007	0.84
151_I	155_V	1.005	0.84
67_N	70_G	0.999	0.83
48_M	174_V	0.993	0.83
17_R	42_I	0.986	0.82
63_G	81_L	0.985	0.82
50_V	148_F	0.980	0.82
152_L	158_T	0.976	0.82
19_K	93_R	0.974	0.82
16_G	130_E	0.967	0.81
51_V	55_I	0.954	0.80
63_G	67_N	0.953	0.80
178_L	184_S	0.943	0.80
60_Q	64_I	0.943	0.80
122_I	125_L	0.942	0.79
35_I	166_F	0.938	0.79
19_K	23_H	0.936	0.79
68_L	141_L	0.933	0.79
48_M	132_V	0.930	0.79
23_H	27_Q	0.908	0.77
37_G	172_G	0.906	0.77
138_V	148_F	0.905	0.77
22_E	53_N	0.904	0.77
78_L	183_D	0.896	0.76
35_I	190_P	0.895	0.76
139_Q	168_G	0.890	0.75
73_S	77_L	0.883	0.75
132_V	165_I	0.875	0.74
63_G	66_I	0.874	0.74
114_K	122_I	0.872	0.74
72_R	77_L	0.868	0.74
15_V	37_G	0.865	0.73
72_R	121_L	0.864	0.73
139_Q	166_F	0.856	0.73
132_V	163_H	0.845	0.72
115_R	139_Q	0.845	0.72
121_L	143_F	0.831	0.70
61_I	65_Y	0.831	0.70
68_L	72_R	0.828	0.70
42_I	165_I	0.827	0.70
149_L	177_L	0.824	0.70
15_V	189_R	0.819	0.69
73_S	87_K	0.812	0.69
81_L	179_S	0.811	0.68
118_V	121_L	0.810	0.68
167_S	181_P	0.807	0.68
63_G	77_L	0.804	0.68
156_Y	189_R	0.802	0.68
77_L	81_L	0.801	0.67
20_E	134_A	0.798	0.67
74_L	78_L	0.798	0.67
96_V	132_V	0.787	0.66
25_I	75_N	0.784	0.66
65_Y	141_L	0.777	0.65
39_Q	156_Y	0.772	0.65
130_E	163_H	0.770	0.64
78_L	82_V	0.769	0.64
85_I	129_D	0.766	0.64
150_D	185_P	0.761	0.63
166_F	178_L	0.761	0.63
68_L	135_F	0.760	0.63
26_S	128_S	0.755	0.63
64_I	69_R	0.755	0.63
33_W	164_M	0.745	0.62
42_I	98_I	0.743	0.62
94_F	161_K	0.742	0.62
164_M	189_R	0.737	0.61
153_G	185_P	0.733	0.61
33_W	41_E	0.729	0.60
80_I	84_E	0.725	0.60
33_W	189_R	0.724	0.60
140_E	143_F	0.723	0.60
14_L	153_G	0.720	0.59
175_K	179_S	0.714	0.59
150_D	153_G	0.713	0.58
138_V	157_A	0.708	0.58
154_N	159_N	0.707	0.58
157_A	184_S	0.707	0.58
22_E	29_L	0.702	0.57
24_C	51_V	0.693	0.56
140_E	144_A	0.688	0.56
46_S	145_S	0.687	0.56
37_G	167_S	0.683	0.55
119_N	174_V	0.679	0.55
26_S	83_S	0.669	0.54
19_K	133_I	0.669	0.54
131_I	161_K	0.667	0.53
149_L	167_S	0.667	0.53
21_V	54_E	0.662	0.53
139_Q	178_L	0.661	0.53
61_I	81_L	0.660	0.53
22_E	26_S	0.653	0.52
73_S	177_L	0.650	0.52
79_T	116_R	0.650	0.52
36_I	41_E	0.649	0.51
78_L	85_I	0.646	0.51
44_K	137_E	0.642	0.51
25_I	45_T	0.642	0.51
119_N	125_L	0.641	0.51
77_L	155_V	0.638	0.50
129_D	132_V	0.632	0.50
110_R	116_R	0.630	0.49
40_R	137_E	0.628	0.49
53_N	127_S	0.626	0.49
28_I	51_V	0.626	0.49
145_S	151_I	0.621	0.48
35_I	45_T	0.617	0.48
64_I	84_E	0.616	0.48
171_V	189_R	0.615	0.48
42_I	189_R	0.614	0.48
142_S	170_Y	0.614	0.48
123_E	159_N	0.614	0.48
132_V	164_M	0.612	0.47
35_I	68_L	0.610	0.47
138_V	149_L	0.610	0.47
22_E	36_I	0.606	0.47
49_K	133_I	0.606	0.47
141_L	178_L	0.605	0.47
136_D	169_S	0.604	0.47
140_E	150_D	0.599	0.46
68_L	76_S	0.598	0.46
121_L	161_K	0.594	0.45
170_Y	175_K	0.594	0.45
118_V	126_N	0.594	0.45
130_E	161_K	0.592	0.45
64_I	87_K	0.589	0.45
19_K	29_L	0.585	0.44
157_A	164_M	0.583	0.44
170_Y	174_V	0.582	0.44
139_Q	174_V	0.581	0.44
84_E	123_E	0.580	0.44
67_N	187_H	0.579	0.44
28_I	55_I	0.578	0.44
77_L	133_I	0.574	0.43
44_K	136_D	0.574	0.43
37_G	173_L	0.572	0.43
24_C	55_I	0.571	0.43
145_S	149_L	0.571	0.43
15_V	149_L	0.570	0.43
22_E	92_W	0.567	0.42
70_G	135_F	0.560	0.42
80_I	83_S	0.554	0.41
23_H	26_S	0.553	0.41
24_C	165_I	0.549	0.41
45_T	114_K	0.548	0.40
49_K	65_Y	0.546	0.40
28_I	118_V	0.545	0.40
149_L	156_Y	0.544	0.40
46_S	187_H	0.536	0.39
66_I	85_I	0.532	0.39
41_E	191_P	0.524	0.38
155_V	162_V	0.524	0.38
61_I	135_F	0.523	0.38
119_N	154_N	0.523	0.38
14_L	143_F	0.520	0.38
14_L	150_D	0.519	0.37
19_K	128_S	0.516	0.37
153_G	186_L	0.514	0.37
30_S	187_H	0.513	0.37
151_I	165_I	0.511	0.37
139_Q	149_L	0.509	0.36
33_W	157_A	0.508	0.36
29_L	162_V	0.507	0.36
43_G	137_E	0.506	0.36
82_V	187_H	0.504	0.36
33_W	38_G	0.503	0.36
120_S	124_L	0.500	0.35
81_L	85_I	0.500	0.35

Legend: The i and j are positions as given in the UniProt sequence. Only predictions with Prob ≥ 0.7 are listed. For all 3L/2 predictions, click on one of the links below.

Sco = ((raw_sco - min_sco)/(avg_sco - min_sco))/2 + 0.5
Prob = P(contact | Sco, seq80/√len)
seq80 = effective number of sequences, after reducing redundancy to 80% identity

Text file of predictions (all 3L/2 predictions)
Generate restraints for ROSETTA Structure Modeling
Upload PDB model overlay contacts on the model

HHsearch Results:

Legend: GREMLIN results (Prob ≥ 0.7) overlaid on top PDB hits. The grey/red filled circles underneath are pdb residue contacts (min distance < 5 Angstroms). The shade of the circles is based on the top 10 (or top 20 if e-value < 1E-20) HHsearch results which uses the overall probability and per-site alignment prob. Inter oligomeric contacts in the pdb are in shades of red.

PDB	Chains	Cov	%	HHΔ
2fnaA	1	0.9439	100	0.462	Contact Map
2qenA	1	0.9337	100	0.492	Contact Map
1w5sA	1	0.898	99.7	0.649	Contact Map
4xgcE	1	0.8878	99.7	0.672	Contact Map
2qbyA	1	0.8776	99.6	0.69	Contact Map
4xgcA	1	0.6633	99.6	0.69	Contact Map
1fnnA	1	0.8724	99.6	0.69	Contact Map
3te6A	1	0.8673	99.6	0.696	Contact Map
2v1uA	1	0.8622	99.6	0.697	Contact Map
2qbyB	1	0.8571	99.4	0.726	Contact Map

Sequence Conservation (Image Generated using WebLogo v3)

Legend: Color is used to show Hydrophobicity (Blue: Hydrophilic, Green: Neutral and Black: Hydrophobic). Amount of gaps is represented by width.

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