Q97YU9 - SULSO - GREMLIN Contacts

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Q97YU9 - Pyruvate synthase alpha chain (Pyruvic-ferredoxin oxidoreductase alpha chain) (PorA-1)

UniProt:	Q97YU9	Sequences: MQVLKRKVLALVGNHAVAYAVKQAKPKVLAVFPITPQTTMLEKLSEYISSEELKAELIKVESEHSALASIYGAALAGARVFTATSSQGLLYMTEMIYWAGGQRVPIVAAVATRAIAEPWSIWDDHQDFVSKRDAIWIQIMAENVQEAYDMTIQAFRISEDERVILPVMMGFDGFILTHTMERIEVLEDNEVDNFLPPRQFNLIDFSDPIAIGPIATPEEYIKYRYEAMKAMERAKGVIEEIMGEYERISGRKQHGLVECYKCEDAKYVFVTMGAWSGDGKAAVDRLRDSGVKTGLLKIRVFRPFPKEKVEEYLRSMKGVVVFDRAYSYGYGGILVNEIKAALYGYRVPVYSVVAGIGGKDVRPRHFQKVIEDLINDNLEEERWLF	Download Alignment We filter this alignment to remove sites that have many gaps before running GREMLIN. Date: 2015_01
Length:	385 (346)
Sequences:	5352 (3269)
Seq/√Len:	175.7

ECOLI - NIFJ
HALSA - Q9HQJ9 Q9HRZ5
SULSO - Q97YU9 Q97V78 Q7LX69 Q97V21 Q97WQ2

GREMLIN Results:

Legend: The darker and larger the blue dots, the higher coevolution strength.

Residue pairs sorted by coevolution strength:

i	j	Sco	Prob
266_K	317_K	5.615	1.00
145_Q	149_D	4.112	1.00
260_Y	284_D	3.030	1.00
267_Y	318_G	3.025	1.00
283_V	295_L	2.913	1.00
139_I	157_I	2.722	1.00
271_T	279_G	2.514	1.00
17_V	147_A	2.470	1.00
268_V	316_M	2.466	1.00
151_T	169_M	2.325	1.00
79_R	159_E	2.305	1.00
246_E	252_K	2.258	1.00
239_E	243_G	2.253	1.00
286_L	367_Q	2.209	1.00
262_C	268_V	2.204	1.00
305_P	308_K	2.188	1.00
26_P	155_F	2.138	1.00
84_T	89_L	2.106	1.00
243_G	247_R	2.091	1.00
209_I	213_P	2.076	1.00
235_K	239_E	2.047	1.00
8_V	184_E	2.044	1.00
150_M	299_R	2.041	1.00
21_V	81_F	2.023	1.00
23_Q	148_Y	2.022	1.00
109_A	154_A	1.984	1.00
17_V	171_F	1.982	1.00
268_V	312_Y	1.978	1.00
285_R	367_Q	1.973	1.00
336_N	340_A	1.939	1.00
269_F	279_G	1.936	1.00
296_L	309_V	1.935	1.00
27_K	78_A	1.910	1.00
264_D	292_K	1.875	1.00
17_V	151_T	1.864	1.00
355_G	365_H	1.854	1.00
243_G	246_E	1.847	1.00
89_L	168_M	1.846	1.00
148_Y	186_L	1.840	1.00
313_L	319_V	1.832	1.00
96_I	136_W	1.817	1.00
71_Y	99_A	1.813	1.00
19_Y	47_Y	1.803	1.00
67_L	108_A	1.802	1.00
267_Y	291_V	1.802	1.00
271_T	295_L	1.793	1.00
29_L	83_A	1.785	1.00
141_A	169_M	1.782	1.00
209_I	212_G	1.772	1.00
210_A	213_P	1.755	1.00
208_P	212_G	1.746	1.00
96_I	108_A	1.738	1.00
73_A	80_V	1.718	1.00
267_Y	320_V	1.710	1.00
160_D	251_R	1.709	1.00
187_E	190_E	1.700	1.00
146_E	297_K	1.685	1.00
137_I	157_I	1.678	1.00
286_L	370_I	1.667	1.00
308_K	311_E	1.655	1.00
269_F	370_I	1.652	1.00
111_A	171_F	1.630	1.00
266_K	292_K	1.626	1.00
261_K	284_D	1.622	1.00
246_E	249_S	1.614	1.00
279_G	322_F	1.607	1.00
47_Y	52_E	1.602	1.00
268_V	313_L	1.596	1.00
28_V	69_S	1.593	1.00
97_Y	130_S	1.582	1.00
238_I	241_I	1.581	1.00
339_K	343_Y	1.571	1.00
171_F	177_T	1.567	1.00
318_G	348_P	1.559	1.00
67_L	95_M	1.547	1.00
276_S	297_K	1.543	1.00
43_K	46_E	1.521	1.00
306_K	341_A	1.513	1.00
307_E	311_E	1.508	1.00
301_F	337_E	1.503	1.00
342_L	349_V	1.486	1.00
70_I	106_I	1.485	1.00
281_A	285_R	1.484	1.00
335_V	339_K	1.450	1.00
152_I	191_V	1.441	1.00
269_F	283_V	1.430	1.00
8_V	182_R	1.427	1.00
112_T	127_D	1.426	1.00
271_T	276_S	1.422	1.00
96_I	168_M	1.413	1.00
153_Q	256_L	1.413	1.00
71_Y	95_M	1.410	1.00
114_A	357_G	1.409	1.00
296_L	308_K	1.388	1.00
68_A	95_M	1.387	1.00
70_I	80_V	1.375	1.00
298_I	334_L	1.364	1.00
247_R	251_R	1.363	1.00
268_V	319_V	1.357	1.00
257_V	305_P	1.352	1.00
142_E	276_S	1.350	1.00
304_F	341_A	1.348	1.00
22_K	83_A	1.346	1.00
237_V	241_I	1.338	1.00
362_R	365_H	1.335	1.00
137_I	165_L	1.320	1.00
143_N	277_G	1.316	1.00
244_E	247_R	1.310	1.00
26_P	81_F	1.308	1.00
207_D	213_P	1.307	1.00
131_K	138_Q	1.278	1.00
30_A	69_S	1.276	1.00
136_W	168_M	1.270	1.00
89_L	110_V	1.268	1.00
244_E	248_I	1.263	1.00
242_M	246_E	1.262	1.00
99_A	106_I	1.262	1.00
207_D	210_A	1.253	1.00
294_G	316_M	1.240	1.00
276_S	280_K	1.238	1.00
268_V	296_L	1.234	1.00
30_A	70_I	1.227	1.00
28_V	73_A	1.221	1.00
15_H	43_K	1.213	1.00
90_L	131_K	1.207	1.00
29_L	41_L	1.204	1.00
240_E	244_E	1.202	1.00
264_D	287_R	1.200	1.00
19_Y	23_Q	1.199	1.00
37_Q	83_A	1.188	1.00
339_K	344_G	1.184	1.00
24_A	155_F	1.184	1.00
255_G	258_E	1.182	1.00
320_V	353_V	1.181	1.00
210_A	214_I	1.179	1.00
203_I	206_S	1.175	1.00
279_G	366_F	1.172	1.00
157_I	241_I	1.172	1.00
285_R	288_D	1.172	1.00
235_K	238_I	1.171	1.00
142_E	146_E	1.170	1.00
89_L	112_T	1.165	1.00
139_I	167_V	1.163	1.00
265_A	294_G	1.159	1.00
361_V	366_F	1.156	1.00
296_L	312_Y	1.155	1.00
289_S	367_Q	1.140	1.00
132_R	333_I	1.140	1.00
271_T	275_W	1.128	1.00
111_A	177_T	1.128	1.00
270_V	309_V	1.126	1.00
107_V	154_A	1.121	1.00
311_E	314_R	1.118	1.00
139_I	300_V	1.116	1.00
321_V	338_I	1.115	1.00
48_I	55_A	1.109	1.00
74_A	104_V	1.100	1.00
298_I	301_F	1.100	1.00
93_T	131_K	1.100	1.00
275_W	361_V	1.097	1.00
272_M	325_A	1.092	1.00
12_V	15_H	1.089	1.00
20_A	148_Y	1.088	1.00
67_L	106_I	1.083	1.00
262_C	265_A	1.082	1.00
307_E	310_E	1.082	1.00
146_E	299_R	1.081	1.00
234_A	237_V	1.077	1.00
236_G	307_E	1.076	1.00
129_V	336_N	1.066	1.00
237_V	240_E	1.061	1.00
160_D	244_E	1.060	1.00
209_I	214_I	1.058	1.00
201_N	205_F	1.058	1.00
248_I	251_R	1.051	1.00
268_V	294_G	1.043	1.00
18_A	40_M	1.042	1.00
312_Y	316_M	1.037	0.99
43_K	47_Y	1.028	0.99
131_K	168_M	1.020	0.99
286_L	291_V	1.017	0.99
97_Y	133_D	1.010	0.99
106_I	158_S	1.010	0.99
259_C	262_C	1.009	0.99
201_N	204_D	1.008	0.99
245_Y	248_I	1.008	0.99
287_R	293_T	1.007	0.99
234_A	238_I	1.006	0.99
250_G	307_E	1.006	0.99
310_E	345_Y	1.003	0.99
107_V	155_F	0.997	0.99
60_V	69_S	0.994	0.99
275_W	366_F	0.994	0.99
17_V	169_M	0.993	0.99
142_E	297_K	0.993	0.99
27_K	55_A	0.989	0.99
20_A	151_T	0.987	0.99
79_R	155_F	0.986	0.99
306_K	310_E	0.980	0.99
138_Q	168_M	0.973	0.99
241_I	248_I	0.971	0.99
161_E	234_A	0.959	0.99
304_F	309_V	0.957	0.99
283_V	287_R	0.955	0.99
18_A	43_K	0.951	0.99
31_V	83_A	0.945	0.99
81_F	155_F	0.942	0.99
202_L	205_F	0.941	0.99
140_M	170_G	0.940	0.99
280_K	297_K	0.938	0.99
261_K	287_R	0.935	0.99
139_I	154_A	0.932	0.99
249_S	306_K	0.931	0.99
349_V	352_V	0.931	0.99
236_G	240_E	0.931	0.99
193_N	196_P	0.930	0.99
129_V	331_G	0.930	0.99
247_R	250_G	0.929	0.99
241_I	244_E	0.928	0.99
14_N	39_T	0.923	0.99
11_L	183_I	0.923	0.99
309_V	338_I	0.920	0.99
9_L	185_V	0.916	0.99
262_C	287_R	0.908	0.99
114_A	120_S	0.903	0.99
23_Q	152_I	0.902	0.99
123_D	127_D	0.901	0.99
121_I	127_D	0.895	0.98
66_A	92_M	0.894	0.98
109_A	151_T	0.892	0.98
332_G	335_V	0.888	0.98
276_S	279_G	0.885	0.98
364_R	367_Q	0.882	0.98
31_V	41_L	0.880	0.98
270_V	313_L	0.878	0.98
190_E	193_N	0.878	0.98
161_E	251_R	0.870	0.98
154_A	169_M	0.869	0.98
12_V	180_M	0.867	0.98
139_I	150_M	0.866	0.98
128_F	140_M	0.866	0.98
279_G	282_A	0.865	0.98
258_E	299_R	0.863	0.98
241_I	249_S	0.861	0.98
153_Q	157_I	0.858	0.98
97_Y	134_A	0.855	0.98
153_Q	156_R	0.853	0.98
70_I	82_T	0.849	0.98
308_K	312_Y	0.847	0.98
233_R	236_G	0.844	0.98
269_F	366_F	0.839	0.98
153_Q	255_G	0.839	0.98
239_E	308_K	0.838	0.98
150_M	153_Q	0.838	0.98
128_F	170_G	0.837	0.98
119_W	127_D	0.834	0.98
267_Y	370_I	0.832	0.98
160_D	240_E	0.830	0.98
188_D	192_D	0.830	0.98
90_L	115_I	0.829	0.97
40_M	111_A	0.825	0.97
337_E	340_A	0.825	0.97
123_D	324_R	0.819	0.97
152_I	156_R	0.818	0.97
24_A	188_D	0.818	0.97
114_A	220_Y	0.816	0.97
270_V	296_L	0.816	0.97
156_R	160_D	0.816	0.97
189_N	193_N	0.815	0.97
285_R	289_S	0.815	0.97
246_E	251_R	0.814	0.97
208_P	213_P	0.814	0.97
129_V	333_I	0.813	0.97
236_G	239_E	0.804	0.97
118_P	127_D	0.800	0.97
224_R	227_A	0.797	0.97
125_H	128_F	0.796	0.97
248_I	252_K	0.795	0.97
9_L	19_Y	0.795	0.97
146_E	149_D	0.793	0.97
148_Y	185_V	0.792	0.97
114_A	119_W	0.789	0.97
279_G	295_L	0.787	0.97
258_E	261_K	0.786	0.97
304_F	334_L	0.783	0.96
28_V	78_A	0.783	0.96
262_C	294_G	0.783	0.96
232_E	235_K	0.781	0.96
81_F	109_A	0.781	0.96
272_M	334_L	0.777	0.96
223_Y	226_E	0.777	0.96
331_G	335_V	0.774	0.96
364_R	368_K	0.773	0.96
207_D	212_G	0.772	0.96
339_K	349_V	0.770	0.96
280_K	295_L	0.768	0.96
262_C	292_K	0.765	0.96
118_P	121_I	0.764	0.96
263_E	315_S	0.764	0.96
157_I	238_I	0.763	0.96
243_G	252_K	0.760	0.96
10_A	180_M	0.751	0.96
246_E	250_G	0.750	0.95
21_V	40_M	0.750	0.95
119_W	122_W	0.749	0.95
14_N	177_T	0.745	0.95
269_F	320_V	0.743	0.95
93_T	134_A	0.741	0.95
258_E	297_K	0.740	0.95
58_I	69_S	0.738	0.95
82_T	108_A	0.736	0.95
219_E	223_Y	0.732	0.95
151_T	155_F	0.729	0.95
367_Q	370_I	0.728	0.95
140_M	272_M	0.727	0.95
334_L	338_I	0.726	0.95
137_I	167_V	0.726	0.95
14_N	37_Q	0.725	0.95
24_A	152_I	0.723	0.95
147_A	169_M	0.722	0.94
220_Y	223_Y	0.721	0.94
21_V	155_F	0.721	0.94
298_I	309_V	0.721	0.94
265_A	268_V	0.715	0.94
366_F	369_V	0.715	0.94
17_V	109_A	0.713	0.94
138_Q	301_F	0.713	0.94
287_R	290_G	0.713	0.94
41_L	57_L	0.712	0.94
128_F	272_M	0.709	0.94
238_I	242_M	0.708	0.94
40_M	81_F	0.708	0.94
267_Y	293_T	0.706	0.94
130_S	134_A	0.705	0.94
34_I	87_Q	0.705	0.94
19_Y	185_V	0.702	0.94
104_V	158_S	0.702	0.94
241_I	245_Y	0.701	0.94
18_A	44_L	0.701	0.94
233_R	240_E	0.700	0.94
333_I	337_E	0.700	0.94
282_A	286_L	0.700	0.94
41_L	45_S	0.700	0.94
44_L	57_L	0.697	0.93
287_R	292_K	0.696	0.93
19_Y	52_E	0.694	0.93
259_C	294_G	0.694	0.93
222_K	359_K	0.693	0.93
9_L	15_H	0.691	0.93
20_A	24_A	0.690	0.93
23_Q	186_L	0.689	0.93
252_K	255_G	0.685	0.93
64_H	92_M	0.682	0.93
144_V	181_E	0.682	0.93
22_K	52_E	0.680	0.93
118_P	123_D	0.678	0.92
119_W	124_D	0.678	0.92
320_V	369_V	0.678	0.92
67_L	70_I	0.678	0.92
90_L	93_T	0.677	0.92
256_L	308_K	0.677	0.92
233_R	237_V	0.674	0.92
19_Y	148_Y	0.674	0.92
245_Y	249_S	0.670	0.92
242_M	245_Y	0.665	0.92
310_E	314_R	0.663	0.92
202_L	206_S	0.663	0.92
172_D	274_A	0.658	0.91
107_V	159_E	0.657	0.91
29_L	81_F	0.656	0.91
338_I	342_L	0.656	0.91
312_Y	315_S	0.655	0.91
311_E	315_S	0.655	0.91
335_V	351_S	0.654	0.91
26_P	44_L	0.653	0.91
270_V	338_I	0.653	0.91
318_G	351_S	0.647	0.91
260_Y	283_V	0.647	0.91
139_I	169_M	0.647	0.91
75_L	211_I	0.646	0.91
320_V	350_Y	0.646	0.91
21_V	151_T	0.640	0.90
239_E	356_I	0.639	0.90
132_R	336_N	0.638	0.90
118_P	125_H	0.635	0.90
264_D	294_G	0.632	0.90
80_V	108_A	0.629	0.89
247_R	252_K	0.626	0.89
336_N	341_A	0.626	0.89
141_A	150_M	0.625	0.89
73_A	78_A	0.621	0.89
156_R	244_E	0.619	0.89
147_A	171_F	0.616	0.88
12_V	39_T	0.614	0.88
155_F	159_E	0.612	0.88
282_A	363_P	0.611	0.88
63_E	88_G	0.606	0.88
161_E	165_L	0.606	0.88
121_I	125_H	0.605	0.87
44_L	55_A	0.604	0.87
306_K	340_A	0.604	0.87
21_V	29_L	0.604	0.87
122_W	127_D	0.604	0.87
332_G	336_N	0.602	0.87
24_A	151_T	0.600	0.87
118_P	122_W	0.599	0.87
263_E	294_G	0.597	0.87
39_T	43_K	0.597	0.87
98_W	102_Q	0.595	0.87
86_S	118_P	0.593	0.86
40_M	109_A	0.592	0.86
282_A	367_Q	0.590	0.86
212_G	215_A	0.589	0.86
29_L	44_L	0.589	0.86
97_Y	131_K	0.588	0.86
71_Y	74_A	0.588	0.86
294_G	315_S	0.587	0.86
145_Q	148_Y	0.586	0.86
15_H	19_Y	0.586	0.86
137_I	248_I	0.585	0.86
232_E	236_G	0.583	0.85
70_I	99_A	0.582	0.85
66_A	70_I	0.581	0.85
173_G	178_H	0.580	0.85
38_T	42_E	0.580	0.85
211_I	214_I	0.578	0.85
30_A	66_A	0.578	0.85
41_L	83_A	0.577	0.85
123_D	126_Q	0.576	0.85
15_H	180_M	0.575	0.85
112_T	170_G	0.575	0.85
22_K	47_Y	0.575	0.85
124_D	127_D	0.575	0.85
119_W	123_D	0.574	0.85
30_A	60_V	0.573	0.84
239_E	242_M	0.571	0.84
318_G	350_Y	0.571	0.84
119_W	126_Q	0.570	0.84
126_Q	220_Y	0.569	0.84
158_S	167_V	0.569	0.84
309_V	313_L	0.568	0.84
75_L	104_V	0.568	0.84
101_G	117_E	0.568	0.84
36_P	88_G	0.567	0.84
240_E	247_R	0.567	0.84
71_Y	102_Q	0.566	0.84
260_Y	280_K	0.564	0.84
103_R	230_A	0.562	0.83
107_V	158_S	0.561	0.83
21_V	24_A	0.560	0.83
79_R	107_V	0.559	0.83
355_G	359_K	0.559	0.83
7_K	184_E	0.557	0.83
279_G	283_V	0.557	0.83
313_L	316_M	0.553	0.82
313_L	342_L	0.553	0.82
243_G	248_I	0.553	0.82
280_K	284_D	0.553	0.82
184_E	191_V	0.551	0.82
249_S	252_K	0.550	0.82
116_A	119_W	0.547	0.82
229_K	233_R	0.546	0.82
16_A	20_A	0.545	0.81
332_G	353_V	0.544	0.81
156_R	193_N	0.543	0.81
120_S	357_G	0.542	0.81
127_D	168_M	0.542	0.81
126_Q	325_A	0.542	0.81
325_A	333_I	0.542	0.81
355_G	361_V	0.541	0.81
109_A	155_F	0.541	0.81
23_Q	188_D	0.541	0.81
236_G	243_G	0.538	0.81
19_Y	43_K	0.538	0.81
354_A	358_G	0.537	0.80
118_P	124_D	0.535	0.80
27_K	53_L	0.535	0.80
262_C	296_L	0.531	0.80
235_K	241_I	0.530	0.80
40_M	171_F	0.525	0.79
44_L	48_I	0.525	0.79
259_C	263_E	0.524	0.79
266_K	318_G	0.521	0.78
194_F	241_I	0.521	0.78
142_E	280_K	0.520	0.78
320_V	370_I	0.520	0.78
35_T	113_R	0.520	0.78
344_G	348_P	0.518	0.78
140_M	301_F	0.517	0.78
101_G	104_V	0.516	0.78
107_V	167_V	0.516	0.78
62_S	121_I	0.515	0.78
234_A	241_I	0.515	0.78
207_D	214_I	0.512	0.77
283_V	293_T	0.512	0.77
160_D	196_P	0.512	0.77
270_V	298_I	0.512	0.77
288_D	291_V	0.511	0.77
11_L	16_A	0.511	0.77
40_M	83_A	0.511	0.77
150_M	300_V	0.510	0.77
186_L	189_N	0.510	0.77
132_R	337_E	0.509	0.77
365_H	368_K	0.507	0.77
122_W	128_F	0.507	0.77
35_T	39_T	0.506	0.76
260_Y	287_R	0.506	0.76
238_I	300_V	0.505	0.76
99_A	136_W	0.505	0.76
109_A	171_F	0.504	0.76
270_V	319_V	0.503	0.76
161_E	248_I	0.503	0.76
256_L	259_C	0.503	0.76
215_A	223_Y	0.502	0.76
148_Y	183_I	0.502	0.76
310_E	343_Y	0.501	0.76
272_M	298_I	0.501	0.76
103_R	162_R	0.500	0.76
201_N	228_M	0.500	0.76

Legend: The i and j are positions as given in the UniProt sequence. Only predictions with Prob ≥ 0.7 are listed. For all 3L/2 predictions, click on one of the links below.

Sco = ((raw_sco - min_sco)/(avg_sco - min_sco))/2 + 0.5
Prob = P(contact | Sco, seq80/√len)
seq80 = effective number of sequences, after reducing redundancy to 80% identity

Text file of predictions (all 3L/2 predictions)
Generate restraints for ROSETTA Structure Modeling
Upload PDB model overlay contacts on the model

HHsearch Results:

Legend: GREMLIN results (Prob ≥ 0.7) overlaid on top PDB hits. The grey/red filled circles underneath are pdb residue contacts (min distance < 5 Angstroms). The shade of the circles is based on the top 10 (or top 20 if e-value < 1E-20) HHsearch results which uses the overall probability and per-site alignment prob. Inter oligomeric contacts in the pdb are in shades of red.

PDB	Chains	Cov	%	HHΔ
2c42A	2	0.9766	100	0.263	Contact Map
5c4iA	2	0.9792	100	0.349	Contact Map
1yd7A	1	0.4338	100	0.435	Contact Map
1qs0B	2	0.8026	100	0.69	Contact Map
1umdB	2	0.7636	100	0.698	Contact Map
1w85B	2	0.7558	100	0.716	Contact Map
1ik6A	3	0.6909	100	0.722	Contact Map
2ozlB	2	0.7636	100	0.729	Contact Map
3komA	2	0.787	100	0.732	Contact Map
2bfdB	2	0.761	99.9	0.733	Contact Map

Sequence Conservation (Image Generated using WebLogo v3)

Legend: Color is used to show Hydrophobicity (Blue: Hydrophilic, Green: Neutral and Black: Hydrophobic). Amount of gaps is represented by width.

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