Q97YT1 - SULSO - GREMLIN Contacts

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Q97YT1 - Toluene-4-monooxygenase system protein A. amino end (TmoA)

UniProt:	Q97YT1	Sequences: MKPVPVEPRLPSRDEYYDLANKLEWTPKYVKEEELFPVDMSGIPNLPIDVWTELYDAPYKVTYREYVKNQKEKDQRLFSVREAGVRAELVKKLDKTYHQGSFCFHITAVPIPEYTAAIAEARMARFGKAGEWRNLSTFGSMDEVRHAQLQILLSHDNIQASPKFAFAHKMFWVDGWLPIAARSFFDDTITGTNAIEFALLTTFAFETGFTNLQFVAYAAMANKTNDFVFSSATQSIQTDEARHAQIGHPVLKAFVDVTKVNEEMEKKI	Download Alignment We filter this alignment to remove sites that have many gaps before running GREMLIN. Date: 2015_01
Length:	268 (237)
Sequences:	434 (248)
Seq/√Len:	16.1

SULSO - Q97YT1 Q97YS6

GREMLIN Results:

Legend: The darker and larger the blue dots, the higher coevolution strength.

Residue pairs sorted by coevolution strength:

i	j	Sco	Prob
170_M	174_D	4.580	1.00
113_E	143_E	3.694	1.00
196_E	200_L	3.576	1.00
88_E	138_F	3.521	0.99
55_Y	132_W	3.207	0.99
55_Y	250_V	2.925	0.98
66_Y	142_D	2.886	0.98
30_V	33_E	2.855	0.98
199_L	204_A	2.846	0.98
115_T	185_F	2.821	0.97
27_P	35_L	2.794	0.97
123_M	136_S	2.696	0.97
239_D	242_R	2.651	0.96
176_W	180_A	2.628	0.96
115_T	189_I	2.603	0.96
132_W	194_A	2.534	0.95
180_A	232_A	2.525	0.95
97_Y	221_A	2.502	0.95
203_F	251_L	2.401	0.94
145_R	239_D	2.346	0.93
183_S	187_D	2.315	0.92
157_N	232_A	2.295	0.92
258_T	261_N	2.061	0.87
55_Y	254_F	2.042	0.86
33_E	39_D	1.932	0.83
145_R	242_R	1.916	0.82
257_V	261_N	1.834	0.79
191_G	196_E	1.832	0.79
127_G	133_R	1.813	0.79
169_K	173_V	1.770	0.77
207_T	211_N	1.756	0.76
67_V	168_H	1.717	0.75
25_W	37_P	1.681	0.73
148_Q	212_L	1.603	0.69
61_V	85_V	1.603	0.69
121_A	140_S	1.581	0.68
209_F	240_E	1.578	0.68
44_P	121_A	1.564	0.67
132_W	250_V	1.563	0.67
88_E	91_K	1.563	0.67
104_F	175_G	1.478	0.63
47_P	260_V	1.476	0.63
134_N	138_F	1.469	0.62
187_D	252_K	1.451	0.61
57_A	194_A	1.437	0.61
141_M	144_V	1.418	0.60
184_F	204_A	1.414	0.59
44_P	48_I	1.413	0.59
63_Y	110_P	1.412	0.59
171_F	175_G	1.412	0.59
179_I	186_D	1.399	0.58
78_F	149_L	1.399	0.58
191_G	217_Y	1.393	0.58
62_T	148_Q	1.385	0.58
38_V	73_K	1.385	0.58
82_E	176_W	1.356	0.56
132_W	259_K	1.353	0.56
243_H	247_G	1.350	0.56
181_A	184_F	1.339	0.55
70_Q	145_R	1.334	0.55
47_P	258_T	1.311	0.53
90_V	153_L	1.308	0.53
70_Q	242_R	1.301	0.53
158_I	162_P	1.300	0.53
36_F	232_A	1.283	0.52
20_A	47_P	1.280	0.52
218_A	229_F	1.274	0.51
184_F	205_F	1.271	0.51
122_R	132_W	1.251	0.50
46_L	49_D	1.239	0.49
57_A	186_D	1.233	0.49
52_T	131_E	1.220	0.48
140_S	166_F	1.193	0.47
70_Q	239_D	1.193	0.47
97_Y	125_R	1.186	0.46
140_S	252_K	1.179	0.46
163_K	260_V	1.172	0.45
63_Y	67_V	1.170	0.45
95_K	192_T	1.158	0.45
151_I	162_P	1.158	0.45
46_L	254_F	1.156	0.44
20_A	56_D	1.148	0.44
195_I	254_F	1.143	0.44
122_R	126_F	1.141	0.44
67_V	84_G	1.136	0.43
118_I	187_D	1.123	0.43
200_L	204_A	1.099	0.41
221_A	226_D	1.098	0.41
106_I	147_A	1.094	0.41
45_N	221_A	1.090	0.41
118_I	189_I	1.083	0.40
26_T	83_A	1.075	0.40
56_D	126_F	1.069	0.40
37_P	206_E	1.068	0.39
106_I	256_D	1.062	0.39
129_A	147_A	1.056	0.39
240_E	247_G	1.054	0.39
86_R	113_E	1.048	0.38
121_A	251_L	1.045	0.38
82_E	251_L	1.045	0.38
166_F	170_M	1.037	0.38
32_E	167_A	1.037	0.38
75_Q	212_L	1.032	0.37
172_W	178_P	1.020	0.37
161_S	213_Q	1.017	0.37
182_R	186_D	1.014	0.36
179_I	193_N	1.014	0.36
105_H	213_Q	1.002	0.36
53_E	199_L	0.987	0.35
168_H	204_A	0.985	0.35
222_N	230_S	0.984	0.35
179_I	202_T	0.983	0.35
63_Y	138_F	0.983	0.35
43_I	125_R	0.982	0.35
240_E	244_A	0.979	0.35
90_V	169_K	0.977	0.35
172_W	179_I	0.977	0.35
106_I	232_A	0.975	0.34
95_K	204_A	0.975	0.34
184_F	222_N	0.965	0.34
66_Y	238_T	0.963	0.34
77_L	228_V	0.961	0.34
213_Q	244_A	0.959	0.34
203_F	238_T	0.957	0.33
163_K	251_L	0.955	0.33
62_T	75_Q	0.950	0.33
69_N	242_R	0.950	0.33
95_K	167_A	0.948	0.33
143_E	206_E	0.941	0.33
116_A	241_A	0.936	0.32
214_F	236_I	0.928	0.32
71_K	93_L	0.928	0.32
109_V	206_E	0.928	0.32
56_D	131_E	0.919	0.32
25_W	29_Y	0.917	0.31
151_I	161_S	0.913	0.31
47_P	92_K	0.911	0.31
36_F	228_V	0.911	0.31
157_N	162_P	0.909	0.31
111_I	172_W	0.907	0.31
96_T	241_A	0.906	0.31
77_L	146_H	0.905	0.31
91_K	138_F	0.904	0.31
133_R	178_P	0.903	0.31
162_P	192_T	0.903	0.31
109_V	176_W	0.901	0.31
29_Y	214_F	0.897	0.30
122_R	240_E	0.897	0.30
113_E	206_E	0.896	0.30
26_T	230_S	0.893	0.30
109_V	210_T	0.885	0.30
172_W	182_R	0.884	0.30
252_K	256_D	0.883	0.30
140_S	189_I	0.883	0.30
176_W	179_I	0.879	0.30
177_L	251_L	0.877	0.29
143_E	221_A	0.877	0.29
185_F	216_A	0.877	0.29
203_F	247_G	0.871	0.29
123_M	242_R	0.868	0.29
55_Y	93_L	0.867	0.29
184_F	191_G	0.867	0.29
93_L	217_Y	0.866	0.29
144_V	199_L	0.857	0.29
138_F	148_Q	0.857	0.29
47_P	174_D	0.856	0.28
105_H	175_G	0.843	0.28
171_F	213_Q	0.840	0.28
23_L	29_Y	0.836	0.28
184_F	256_D	0.836	0.28
110_P	189_I	0.836	0.28
44_P	50_V	0.836	0.28
104_F	191_G	0.835	0.27
39_D	174_D	0.834	0.27
130_G	165_A	0.833	0.27
118_I	123_M	0.827	0.27
31_K	34_E	0.827	0.27
47_P	195_I	0.821	0.27
86_R	234_Q	0.817	0.27
123_M	202_T	0.816	0.27
71_K	106_I	0.813	0.26
21_N	45_N	0.812	0.26
46_L	55_Y	0.810	0.26
76_R	102_F	0.809	0.26
69_N	230_S	0.808	0.26
191_G	247_G	0.804	0.26
84_G	114_Y	0.803	0.26
47_P	50_V	0.803	0.26
155_H	160_A	0.802	0.26
86_R	143_E	0.795	0.26
149_L	236_I	0.793	0.26
53_E	253_A	0.790	0.25
210_T	239_D	0.788	0.25
63_Y	108_A	0.785	0.25
141_M	247_G	0.781	0.25
53_E	255_V	0.778	0.25
20_A	148_Q	0.772	0.25
73_K	242_R	0.771	0.25
68_K	234_Q	0.771	0.25
57_A	142_D	0.770	0.25
135_L	217_Y	0.769	0.25
140_S	170_M	0.763	0.24
95_K	221_A	0.761	0.24
108_A	181_A	0.761	0.24
59_Y	70_Q	0.759	0.24
199_L	256_D	0.759	0.24
79_S	103_C	0.757	0.24
195_I	261_N	0.756	0.24
21_N	226_D	0.751	0.24
123_M	197_F	0.747	0.24
171_F	191_G	0.745	0.24
250_V	254_F	0.741	0.23
105_H	217_Y	0.740	0.23
152_L	201_T	0.740	0.23
114_Y	121_A	0.739	0.23
93_L	199_L	0.739	0.23
145_R	151_I	0.737	0.23
73_K	211_N	0.736	0.23
90_V	138_F	0.734	0.23
162_P	209_F	0.729	0.23
81_R	102_F	0.728	0.23
146_H	210_T	0.725	0.23
105_H	170_M	0.722	0.23
66_Y	138_F	0.721	0.23
116_A	207_T	0.714	0.22
50_V	89_L	0.714	0.22
95_K	259_K	0.713	0.22
97_Y	213_Q	0.713	0.22
119_A	191_G	0.712	0.22
226_D	229_F	0.711	0.22
144_V	153_L	0.710	0.22
219_A	224_T	0.707	0.22
111_I	147_A	0.704	0.22
175_G	256_D	0.702	0.22
73_K	192_T	0.702	0.22
29_Y	37_P	0.696	0.22
36_F	260_V	0.695	0.21
79_S	229_F	0.693	0.21
36_F	84_G	0.693	0.21
132_W	226_D	0.692	0.21
58_P	142_D	0.692	0.21
65_E	106_I	0.691	0.21
245_Q	249_P	0.686	0.21
76_R	80_V	0.684	0.21
58_P	193_N	0.682	0.21
146_H	240_E	0.681	0.21
132_W	222_N	0.676	0.21
88_E	92_K	0.673	0.21
133_R	195_I	0.670	0.21
82_E	259_K	0.669	0.20
139_G	243_H	0.665	0.20
110_P	179_I	0.660	0.20
198_A	250_V	0.659	0.20
106_I	217_Y	0.657	0.20
100_G	167_A	0.655	0.20
239_D	247_G	0.654	0.20
46_L	192_T	0.654	0.20
22_K	52_T	0.653	0.20
161_S	164_F	0.651	0.20
204_A	227_F	0.649	0.20
30_V	115_T	0.648	0.20
79_S	168_H	0.648	0.20
146_H	236_I	0.646	0.20
67_V	221_A	0.639	0.19
95_K	215_V	0.637	0.19
49_D	257_V	0.636	0.19
23_L	43_I	0.634	0.19
91_K	251_L	0.631	0.19
61_V	69_N	0.631	0.19
225_N	229_F	0.628	0.19
95_K	216_A	0.628	0.19
51_W	196_E	0.625	0.19
178_P	193_N	0.624	0.19
73_K	243_H	0.624	0.19
130_G	231_S	0.624	0.19
130_G	189_I	0.623	0.19
63_Y	85_V	0.623	0.19
174_D	199_L	0.623	0.19
131_E	250_V	0.623	0.19
88_E	174_D	0.622	0.19
139_G	247_G	0.621	0.19
51_W	148_Q	0.621	0.19
112_P	145_R	0.620	0.19
130_G	140_S	0.619	0.19
82_E	139_G	0.616	0.19
234_Q	245_Q	0.615	0.19
112_P	189_I	0.615	0.19
237_Q	240_E	0.613	0.18
105_H	216_A	0.609	0.18
47_P	225_N	0.603	0.18
139_G	208_G	0.603	0.18
102_F	140_S	0.602	0.18
53_E	251_L	0.602	0.18
63_Y	142_D	0.602	0.18
94_D	225_N	0.600	0.18
64_R	195_I	0.599	0.18
94_D	124_A	0.598	0.18
211_N	240_E	0.597	0.18
127_G	137_T	0.597	0.18
22_K	25_W	0.596	0.18
60_K	143_E	0.596	0.18
24_E	63_Y	0.595	0.18
127_G	255_V	0.590	0.18
113_E	237_Q	0.588	0.18
155_H	158_I	0.586	0.18
95_K	223_K	0.585	0.17
102_F	238_T	0.584	0.17
183_S	211_N	0.583	0.17
107_T	150_Q	0.583	0.17
33_E	125_R	0.581	0.17
63_Y	117_A	0.580	0.17
115_T	180_A	0.579	0.17
166_F	217_Y	0.579	0.17
190_T	249_P	0.579	0.17
204_A	222_N	0.578	0.17
32_E	213_Q	0.574	0.17
165_A	169_K	0.573	0.17
103_C	163_K	0.567	0.17
200_L	217_Y	0.563	0.17
72_E	126_F	0.560	0.17
72_E	78_F	0.559	0.17
20_A	174_D	0.556	0.17
114_Y	141_M	0.553	0.16
113_E	153_L	0.553	0.16
90_V	160_A	0.552	0.16
98_H	196_E	0.545	0.16
55_Y	194_A	0.535	0.16
68_K	184_F	0.534	0.16
164_F	167_A	0.534	0.16
109_V	181_A	0.533	0.16
119_A	235_S	0.533	0.16
143_E	153_L	0.533	0.16
173_V	231_S	0.529	0.16
127_G	135_L	0.529	0.16
211_N	219_A	0.529	0.16
46_L	58_P	0.526	0.16
68_K	138_F	0.524	0.16
74_D	247_G	0.524	0.16
113_E	229_F	0.523	0.15
34_E	230_S	0.522	0.15
165_A	168_H	0.519	0.15
49_D	132_W	0.517	0.15
131_E	212_L	0.516	0.15
151_I	159_Q	0.514	0.15
101_S	217_Y	0.513	0.15
55_Y	203_F	0.512	0.15
25_W	239_D	0.510	0.15
111_I	182_R	0.509	0.15
122_R	191_G	0.508	0.15
211_N	235_S	0.507	0.15
125_R	221_A	0.506	0.15
86_R	95_K	0.506	0.15
65_E	86_R	0.506	0.15
27_P	36_F	0.505	0.15
34_E	169_K	0.504	0.15
36_F	79_S	0.500	0.15

Legend: The i and j are positions as given in the UniProt sequence. Only predictions with Prob ≥ 0.7 are listed. For all 3L/2 predictions, click on one of the links below.

Sco = ((raw_sco - min_sco)/(avg_sco - min_sco))/2 + 0.5
Prob = P(contact | Sco, seq80/√len)
seq80 = effective number of sequences, after reducing redundancy to 80% identity

Text file of predictions (all 3L/2 predictions)
Generate restraints for ROSETTA Structure Modeling
Upload PDB model overlay contacts on the model

HHsearch Results:

Legend: GREMLIN results (Prob ≥ 0.7) overlaid on top PDB hits. The grey/red filled circles underneath are pdb residue contacts (min distance < 5 Angstroms). The shade of the circles is based on the top 10 (or top 20 if e-value < 1E-20) HHsearch results which uses the overall probability and per-site alignment prob. Inter oligomeric contacts in the pdb are in shades of red.

PDB	Chains	Cov	%	HHΔ
2incA	2	0.9552	100	0.208	Contact Map
3ge3A	2	0.9478	100	0.208	Contact Map
2incB	2	0.9888	100	0.219	Contact Map
3u52C	2	0.9776	100	0.221	Contact Map
3ge3B	2	0.9851	100	0.226	Contact Map
1mtyB	2	0.9813	100	0.24	Contact Map
1mhyB	2	0.9776	100	0.243	Contact Map
3u52A	2	0.944	100	0.247	Contact Map
1mtyD	2	0.944	100	0.285	Contact Map
4mudA	2	0.6194	99.4	0.832	Contact Map

Sequence Conservation (Image Generated using WebLogo v3)

Legend: Color is used to show Hydrophobicity (Blue: Hydrophilic, Green: Neutral and Black: Hydrophobic). Amount of gaps is represented by width.

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