Q97YR5 - SULSO - GREMLIN Contacts

Home
GREMLIN
- Submit - Monomer
- Submit - Complex
Contacts
Metagenomics
- Contacts
- Structures
Structures
- List
Old Projects
- Complexes (2014)
- PFAM (2013)

Q97YR5 - Citryl-CoA lyase beta subunit homolog (CitE)

UniProt:	Q97YR5	Sequences: MIRRSQLYVPATSEKMIRKSVELKADSIIFDLEDAVPPEDKERARESLIKLVKELDWGKRELCVRVNSLQLLDSYKDISTIAREDKITCIVLPKAENDLSFLYKATGKSLIPLIETAKGLVKIEDIVRSEGVVAVSYGAADLSLSLGGDYNFYEKNVYVKTLIVSVARTYDVDAIDKVYFDLKNLDGFRKECEEAKKLGYVGKQVIHPSQIDISNEVFSPSKEEIEWAKKVIEAYEKGKREGRGAIRLDDKLVDYVHYKIAKRIIEFQS	Download Alignment We filter this alignment to remove sites that have many gaps before running GREMLIN. Date: 2015_01
Length:	269 (257)
Sequences:	3763 (2511)
Seq/√Len:	156.6

ECOLI - CITE
HALSA - Q9HRM8
SULSO - Q97YR5

GREMLIN Results:

Legend: The darker and larger the blue dots, the higher coevolution strength.

Residue pairs sorted by coevolution strength:

i	j	Sco	Prob
205_V	214_S	4.219	1.00
230_K	249_D	4.182	1.00
189_R	216_E	4.047	1.00
179_Y	187_G	3.983	1.00
63_C	89_C	3.718	1.00
11_A	48_L	3.633	1.00
227_W	231_V	3.050	1.00
40_D	43_R	3.030	1.00
189_R	193_E	2.859	1.00
122_K	125_D	2.858	1.00
5_S	215_N	2.709	1.00
127_V	135_V	2.683	1.00
117_A	145_S	2.640	1.00
158_Y	162_L	2.607	1.00
183_K	209_S	2.477	1.00
45_R	77_D	2.465	1.00
66_V	74_S	2.278	1.00
191_E	203_K	2.178	1.00
232_I	265_I	2.162	1.00
255_Y	259_K	2.103	1.00
121_V	162_L	2.093	1.00
230_K	248_L	2.092	1.00
63_C	91_V	2.074	1.00
137_Y	142_L	2.073	1.00
188_F	214_S	2.049	1.00
112_P	132_V	2.020	1.00
221_S	224_E	1.976	1.00
182_L	247_R	1.963	1.00
259_K	262_K	1.935	1.00
212_D	216_E	1.923	1.00
30_F	48_L	1.885	1.00
12_T	40_D	1.864	1.00
92_L	102_L	1.859	1.00
222_K	226_E	1.853	1.00
142_L	146_L	1.850	1.00
236_E	262_K	1.850	1.00
46_E	50_K	1.824	1.00
231_V	248_L	1.798	1.00
196_K	224_E	1.752	1.00
192_C	217_V	1.736	1.00
76_K	79_S	1.719	1.00
176_D	203_K	1.676	1.00
103_Y	131_G	1.659	1.00
12_T	37_P	1.589	1.00
96_E	118_K	1.579	1.00
225_I	264_I	1.571	1.00
139_A	177_K	1.563	1.00
109_S	133_V	1.554	1.00
121_V	169_T	1.529	1.00
123_I	166_V	1.527	1.00
24_K	60_R	1.505	1.00
248_L	253_V	1.499	1.00
42_E	76_K	1.488	1.00
6_Q	27_S	1.481	1.00
136_S	204_Q	1.478	1.00
226_E	230_K	1.475	1.00
69_L	74_S	1.464	1.00
140_A	180_F	1.453	1.00
181_D	184_N	1.447	1.00
95_A	126_I	1.441	1.00
14_E	47_S	1.433	1.00
8_Y	204_Q	1.429	1.00
73_D	76_K	1.389	1.00
38_P	73_D	1.388	1.00
6_Q	175_I	1.375	1.00
188_F	213_I	1.368	1.00
13_S	16_M	1.354	1.00
114_I	123_I	1.342	1.00
118_K	122_K	1.339	1.00
229_K	233_E	1.330	1.00
167_A	174_A	1.325	1.00
103_Y	129_S	1.325	1.00
189_R	217_V	1.319	1.00
186_D	189_R	1.309	1.00
64_V	81_I	1.296	1.00
192_C	203_K	1.296	1.00
237_K	241_E	1.293	1.00
149_D	197_K	1.293	1.00
68_S	71_L	1.288	1.00
263_R	267_F	1.276	1.00
195_A	218_F	1.265	1.00
227_W	264_I	1.259	1.00
99_L	112_P	1.253	1.00
84_E	87_I	1.246	1.00
43_R	47_S	1.240	1.00
183_K	247_R	1.219	1.00
124_E	162_L	1.214	1.00
120_L	159_V	1.204	1.00
144_L	259_K	1.197	1.00
114_I	120_L	1.187	1.00
111_I	136_S	1.184	1.00
91_V	136_S	1.183	1.00
27_S	63_C	1.168	1.00
50_K	54_E	1.160	1.00
185_L	189_R	1.147	1.00
258_Y	262_K	1.139	1.00
49_I	80_T	1.132	1.00
174_A	201_V	1.129	1.00
233_E	237_K	1.125	1.00
163_I	174_A	1.124	1.00
100_S	129_S	1.123	1.00
157_V	161_T	1.122	1.00
184_N	187_G	1.110	1.00
140_A	256_V	1.108	1.00
262_K	266_E	1.103	0.99
6_Q	29_I	1.096	0.99
121_V	124_E	1.091	0.99
112_P	126_I	1.068	0.99
119_G	123_I	1.064	0.99
124_E	169_T	1.054	0.99
233_E	236_E	1.051	0.99
255_Y	262_K	1.036	0.99
168_R	201_V	1.034	0.99
227_W	249_D	1.033	0.99
160_K	176_D	1.014	0.99
235_Y	258_Y	1.013	0.99
34_D	94_K	1.008	0.99
154_E	157_V	1.007	0.99
142_L	165_S	1.005	0.99
75_Y	79_S	1.002	0.99
97_N	122_K	0.997	0.99
227_W	251_K	0.994	0.99
17_I	30_F	0.994	0.99
220_P	225_I	0.989	0.99
42_E	46_E	0.985	0.99
17_I	51_L	0.978	0.99
185_L	209_S	0.974	0.99
71_L	74_S	0.972	0.99
225_I	265_I	0.972	0.99
48_L	64_V	0.971	0.99
21_V	51_L	0.968	0.99
149_D	224_E	0.966	0.99
213_I	217_V	0.959	0.99
175_I	204_Q	0.952	0.99
180_F	252_L	0.949	0.98
179_Y	191_E	0.944	0.98
140_A	257_H	0.943	0.98
123_I	127_V	0.942	0.98
43_R	46_E	0.939	0.98
154_E	194_E	0.934	0.98
188_F	192_C	0.929	0.98
157_V	194_E	0.928	0.98
223_E	226_E	0.927	0.98
118_K	128_R	0.910	0.98
18_R	21_V	0.909	0.98
105_A	131_G	0.906	0.98
78_I	102_L	0.905	0.98
124_E	128_R	0.905	0.98
232_I	235_Y	0.903	0.98
245_A	254_D	0.903	0.98
190_K	194_E	0.899	0.98
97_N	126_I	0.890	0.98
49_I	53_K	0.890	0.98
147_G	263_R	0.887	0.98
162_L	165_S	0.882	0.98
189_R	213_I	0.879	0.97
188_F	210_Q	0.875	0.97
14_E	17_I	0.874	0.97
74_S	102_L	0.874	0.97
114_I	126_I	0.873	0.97
192_C	218_F	0.871	0.97
8_Y	178_V	0.870	0.97
36_V	44_A	0.865	0.97
186_D	190_K	0.864	0.97
47_S	50_K	0.863	0.97
176_D	195_A	0.860	0.97
164_V	200_Y	0.859	0.97
157_V	198_L	0.855	0.97
19_K	22_E	0.855	0.97
117_A	169_T	0.855	0.97
98_D	101_F	0.854	0.97
225_I	229_K	0.851	0.97
137_Y	159_V	0.849	0.97
111_I	134_A	0.842	0.97
118_K	169_T	0.840	0.97
18_R	54_E	0.836	0.97
66_V	92_L	0.836	0.97
115_E	141_D	0.833	0.97
158_Y	161_T	0.829	0.96
24_K	212_D	0.827	0.96
135_V	167_A	0.821	0.96
128_R	170_Y	0.819	0.96
136_S	202_G	0.819	0.96
155_K	158_Y	0.816	0.96
181_D	251_K	0.815	0.96
102_L	110_L	0.812	0.96
101_F	104_K	0.809	0.96
134_A	167_A	0.804	0.96
23_L	211_I	0.803	0.96
120_L	123_I	0.799	0.96
256_V	260_I	0.798	0.96
100_S	104_K	0.793	0.95
143_S	148_G	0.790	0.95
6_Q	63_C	0.789	0.95
83_R	87_I	0.788	0.95
142_L	159_V	0.782	0.95
179_Y	203_K	0.780	0.95
111_I	175_I	0.778	0.95
96_E	119_G	0.775	0.95
133_V	173_D	0.770	0.95
33_E	94_K	0.769	0.95
99_L	102_L	0.769	0.95
41_K	67_N	0.768	0.95
120_L	165_S	0.767	0.95
140_A	254_D	0.761	0.94
116_T	145_S	0.759	0.94
143_S	156_N	0.753	0.94
20_S	30_F	0.751	0.94
192_C	214_S	0.750	0.94
211_I	215_N	0.750	0.94
15_K	18_R	0.750	0.94
140_A	252_L	0.749	0.94
151_N	197_K	0.749	0.94
247_R	250_D	0.747	0.94
229_K	265_I	0.747	0.94
9_V	28_I	0.746	0.94
145_S	168_R	0.743	0.94
78_I	90_I	0.742	0.93
64_V	80_T	0.739	0.93
29_I	91_V	0.733	0.93
134_A	175_I	0.730	0.93
226_E	229_K	0.726	0.93
90_I	110_L	0.723	0.93
66_V	102_L	0.721	0.93
21_V	62_L	0.719	0.92
33_E	141_D	0.719	0.92
117_A	146_L	0.717	0.92
37_P	40_D	0.715	0.92
175_I	202_G	0.714	0.92
176_D	191_E	0.714	0.92
14_E	18_R	0.713	0.92
254_D	257_H	0.712	0.92
36_V	41_K	0.709	0.92
10_P	207_H	0.707	0.92
231_V	249_D	0.706	0.92
174_A	254_D	0.706	0.92
92_L	95_A	0.705	0.92
196_K	217_V	0.701	0.91
70_Q	98_D	0.699	0.91
41_K	45_R	0.698	0.91
158_Y	165_S	0.698	0.91
161_T	164_V	0.697	0.91
138_G	141_D	0.696	0.91
45_R	67_N	0.693	0.91
173_D	201_V	0.689	0.91
182_L	209_S	0.687	0.91
61_E	88_T	0.686	0.91
17_I	47_S	0.685	0.90
137_Y	163_I	0.682	0.90
151_N	155_K	0.675	0.90
6_Q	111_I	0.675	0.90
193_E	197_K	0.671	0.90
18_R	22_E	0.669	0.89
179_Y	210_Q	0.667	0.89
48_L	87_I	0.667	0.89
70_Q	74_S	0.665	0.89
155_K	198_L	0.664	0.89
235_Y	246_I	0.664	0.89
41_K	73_D	0.664	0.89
6_Q	202_G	0.658	0.89
120_L	142_L	0.652	0.88
81_I	87_I	0.651	0.88
24_K	211_I	0.651	0.88
121_V	158_Y	0.650	0.88
9_V	16_M	0.649	0.88
226_E	233_E	0.647	0.88
260_I	264_I	0.647	0.88
114_I	163_I	0.647	0.88
182_L	206_I	0.644	0.88
8_Y	139_A	0.642	0.87
164_V	174_A	0.635	0.87
161_T	198_L	0.634	0.87
127_V	166_V	0.633	0.87
244_G	254_D	0.632	0.87
33_E	115_E	0.632	0.87
15_K	23_L	0.631	0.87
119_G	122_K	0.629	0.86
143_S	150_Y	0.629	0.86
8_Y	29_I	0.625	0.86
92_L	99_L	0.625	0.86
98_D	102_L	0.624	0.86
185_L	213_I	0.624	0.86
134_A	174_A	0.621	0.86
245_A	252_L	0.620	0.86
70_Q	75_Y	0.620	0.86
96_E	116_T	0.617	0.85
114_I	119_G	0.615	0.85
192_C	196_K	0.614	0.85
122_K	126_I	0.614	0.85
109_S	131_G	0.612	0.85
246_I	253_V	0.611	0.85
177_K	204_Q	0.610	0.85
80_T	83_R	0.609	0.85
79_S	105_A	0.608	0.84
13_S	17_I	0.606	0.84
234_A	248_L	0.605	0.84
51_L	55_L	0.604	0.84
52_V	64_V	0.604	0.84
91_V	111_I	0.602	0.84
227_W	230_K	0.600	0.84
67_N	77_D	0.600	0.84
234_A	237_K	0.599	0.84
120_L	163_I	0.599	0.84
52_V	62_L	0.598	0.83
263_R	266_E	0.598	0.83
216_E	219_S	0.597	0.83
246_I	255_Y	0.597	0.83
123_I	162_L	0.597	0.83
5_S	205_V	0.597	0.83
39_E	42_E	0.594	0.83
17_I	20_S	0.591	0.83
178_V	191_E	0.590	0.83
227_W	248_L	0.589	0.83
40_D	47_S	0.589	0.83
115_E	138_G	0.588	0.82
49_I	84_E	0.584	0.82
232_I	262_K	0.584	0.82
25_A	211_I	0.582	0.82
117_A	167_A	0.579	0.81
52_V	84_E	0.577	0.81
63_C	111_I	0.576	0.81
140_A	177_K	0.575	0.81
82_A	90_I	0.575	0.81
160_K	200_Y	0.574	0.81
232_I	236_E	0.572	0.81
179_Y	188_F	0.571	0.81
125_D	128_R	0.569	0.80
150_Y	260_I	0.569	0.80
140_A	144_L	0.567	0.80
166_V	170_Y	0.565	0.80
78_I	83_R	0.564	0.80
162_L	166_V	0.563	0.80
113_L	204_Q	0.561	0.79
92_L	110_L	0.560	0.79
222_K	229_K	0.559	0.79
89_C	134_A	0.558	0.79
75_Y	101_F	0.556	0.79
8_Y	91_V	0.556	0.79
94_K	116_T	0.555	0.79
21_V	55_L	0.554	0.79
34_D	141_D	0.554	0.79
256_V	259_K	0.551	0.78
206_I	252_L	0.549	0.78
243_R	246_I	0.546	0.78
134_A	140_A	0.545	0.77
148_G	155_K	0.544	0.77
66_V	75_Y	0.541	0.77
11_A	17_I	0.541	0.77
64_V	87_I	0.535	0.76
91_V	113_L	0.532	0.76
193_E	217_V	0.531	0.76
76_K	80_T	0.531	0.76
203_K	218_F	0.531	0.76
232_I	258_Y	0.530	0.76
181_D	187_G	0.530	0.76
136_S	203_K	0.529	0.75
69_L	98_D	0.528	0.75
37_P	245_A	0.528	0.75
96_E	117_A	0.526	0.75
5_S	25_A	0.525	0.75
99_L	110_L	0.524	0.75
156_N	200_Y	0.524	0.75
79_S	82_A	0.521	0.74
230_K	233_E	0.520	0.74
81_I	90_I	0.520	0.74
56_D	88_T	0.517	0.74
100_S	103_Y	0.516	0.74
33_E	138_G	0.516	0.74
192_C	195_A	0.515	0.73
55_L	58_G	0.514	0.73
150_Y	155_K	0.514	0.73
42_E	72_L	0.512	0.73
224_E	227_W	0.512	0.73
111_I	133_V	0.511	0.73
118_K	170_Y	0.511	0.73
137_Y	174_A	0.510	0.73
216_E	222_K	0.509	0.73
253_V	258_Y	0.507	0.72
49_I	81_I	0.506	0.72
132_V	172_V	0.504	0.72
178_V	195_A	0.504	0.72
14_E	50_K	0.503	0.72
39_E	242_G	0.502	0.72
207_H	252_L	0.502	0.72
129_S	132_V	0.501	0.71
205_V	211_I	0.500	0.71

Legend: The i and j are positions as given in the UniProt sequence. Only predictions with Prob ≥ 0.7 are listed. For all 3L/2 predictions, click on one of the links below.

Sco = ((raw_sco - min_sco)/(avg_sco - min_sco))/2 + 0.5
Prob = P(contact | Sco, seq80/√len)
seq80 = effective number of sequences, after reducing redundancy to 80% identity

Text file of predictions (all 3L/2 predictions)
Generate restraints for ROSETTA Structure Modeling
Upload PDB model overlay contacts on the model

HHsearch Results:

Legend: GREMLIN results (Prob ≥ 0.7) overlaid on top PDB hits. The grey/red filled circles underneath are pdb residue contacts (min distance < 5 Angstroms). The shade of the circles is based on the top 10 (or top 20 if e-value < 1E-20) HHsearch results which uses the overall probability and per-site alignment prob. Inter oligomeric contacts in the pdb are in shades of red.

PDB	Chains	Cov	%	HHΔ
1sgjA	3	0.8067	100	0.229	Contact Map
4l9zA	5	1	100	0.236	Contact Map
1u5hA	3	0.7844	100	0.239	Contact Map
4l80A	5	0.9851	100	0.24	Contact Map
4roqA	5	0.9963	100	0.241	Contact Map
3qqwA	3	0.9182	100	0.249	Contact Map
3oyzA	5	0.9777	100	0.253	Contact Map
3qllA	3	0.7621	100	0.259	Contact Map
3r4iA	5	0.9814	100	0.262	Contact Map
3cuxA	1	0.9591	100	0.324	Contact Map

Sequence Conservation (Image Generated using WebLogo v3)

Legend: Color is used to show Hydrophobicity (Blue: Hydrophilic, Green: Neutral and Black: Hydrophobic). Amount of gaps is represented by width.

Page generated in 0.0088 seconds.