Q97YR0 - SULSO - GREMLIN Contacts

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Q97YR0 - Uncharacterized protein

UniProt:	Q97YR0	Sequences: MEKGFIILMIISIAAHSEESNHELAEKARKFVRSIKPCNPILLLGGYWGLMRVVVDEALRENIKTVLILPIEKENIEIPREVICIKSGCEFRCRSVILVRSGDLLVSLGGGVGTEIEIMMAYAMGKPIYALTNTGLSTDYFAKSFPDYIDDRKIVKVKYFDNVERMAEEICEDEIKGKEVNFG	Download Alignment We filter this alignment to remove sites that have many gaps before running GREMLIN. Date: 2015_01
Length:	183 (163)
Sequences:	4403 (2880)
Seq/√Len:	225.5

BACSU - YVDD
SULSO - Q97YR0

GREMLIN Results:

Legend: The darker and larger the blue dots, the higher coevolution strength.

Residue pairs sorted by coevolution strength:

i	j	Sco	Prob
10_I	41_I	2.974	1.00
132_T	138_T	2.474	1.00
25_A	53_V	2.312	1.00
146_P	154_I	2.309	1.00
141_F	159_Y	2.294	1.00
38_C	171_C	2.279	1.00
33_R	37_P	2.198	1.00
12_S	102_G	2.191	1.00
71_I	75_N	2.097	1.00
34_S	164_E	2.051	1.00
104_L	170_I	2.007	1.00
160_F	169_E	2.004	1.00
112_V	122_Y	1.992	1.00
129_Y	166_M	1.936	1.00
162_N	165_R	1.887	1.00
41_I	64_K	1.876	1.00
168_E	172_E	1.872	1.00
97_I	101_S	1.864	1.00
118_I	130_A	1.857	1.00
158_K	169_E	1.843	1.00
27_K	30_K	1.838	1.00
160_F	165_R	1.801	1.00
34_S	38_C	1.767	1.00
107_S	118_I	1.764	1.00
31_F	106_V	1.758	1.00
135_G	138_T	1.753	1.00
36_K	63_I	1.724	1.00
34_S	37_P	1.635	1.00
23_E	134_T	1.618	1.00
35_I	40_P	1.554	1.00
56_D	78_I	1.528	1.00
53_V	57_E	1.514	1.00
37_P	61_E	1.459	1.00
78_I	81_E	1.452	1.00
29_R	57_E	1.440	1.00
41_I	66_V	1.432	1.00
29_R	53_V	1.427	1.00
33_R	61_E	1.416	1.00
29_R	60_R	1.413	1.00
139_D	142_A	1.407	1.00
18_E	150_D	1.379	1.00
26_E	29_R	1.366	1.00
29_R	56_D	1.364	1.00
131_L	166_M	1.352	1.00
87_S	91_F	1.345	1.00
96_V	100_R	1.321	1.00
59_L	82_V	1.315	1.00
34_S	163_V	1.314	1.00
151_D	155_V	1.309	1.00
38_C	168_E	1.290	1.00
36_K	61_E	1.256	1.00
25_A	29_R	1.243	1.00
91_F	124_M	1.242	1.00
87_S	90_E	1.219	1.00
13_I	54_V	1.214	1.00
22_H	26_E	1.214	1.00
27_K	131_L	1.212	1.00
160_F	166_M	1.198	1.00
58_A	63_I	1.198	1.00
64_K	82_V	1.192	1.00
30_K	33_R	1.192	1.00
23_E	27_K	1.187	1.00
129_Y	160_F	1.174	1.00
29_R	33_R	1.148	1.00
19_E	25_A	1.134	1.00
84_C	97_I	1.133	1.00
66_V	101_S	1.127	1.00
119_M	140_Y	1.127	1.00
13_I	32_V	1.124	1.00
30_K	34_S	1.124	1.00
97_I	100_R	1.121	1.00
11_I	35_I	1.110	1.00
28_A	108_L	1.107	1.00
32_V	36_K	1.105	1.00
27_K	133_N	1.104	1.00
95_S	116_I	1.088	1.00
9_M	40_P	1.081	1.00
26_E	30_K	1.070	1.00
28_A	32_V	1.064	1.00
83_I	89_C	1.063	1.00
89_C	93_C	1.061	1.00
139_D	144_S	1.061	1.00
30_K	164_E	1.057	1.00
58_A	61_E	1.052	1.00
56_D	80_R	1.052	1.00
88_G	93_C	1.048	1.00
57_E	61_E	1.043	1.00
52_R	56_D	1.042	1.00
11_I	40_P	1.037	1.00
85_I	97_I	1.033	1.00
106_V	166_M	1.025	1.00
56_D	60_R	1.022	1.00
42_L	58_A	0.997	1.00
15_A	47_Y	0.989	1.00
139_D	147_D	0.985	1.00
15_A	54_V	0.984	1.00
32_V	57_E	0.983	1.00
118_I	128_I	0.981	1.00
69_L	76_I	0.966	1.00
12_S	98_L	0.961	1.00
88_G	91_F	0.960	1.00
129_Y	169_E	0.958	1.00
90_E	124_M	0.954	1.00
71_I	88_G	0.949	1.00
165_R	169_E	0.944	1.00
138_T	142_A	0.930	1.00
68_I	97_I	0.929	1.00
115_E	119_M	0.925	1.00
163_V	167_A	0.923	1.00
83_I	90_E	0.914	0.99
33_R	60_R	0.912	0.99
12_S	105_L	0.910	0.99
35_I	58_A	0.898	0.99
36_K	58_A	0.898	0.99
11_I	104_L	0.894	0.99
34_S	167_A	0.888	0.99
58_A	65_T	0.883	0.99
105_L	126_K	0.881	0.99
112_V	149_I	0.880	0.99
35_I	42_L	0.880	0.99
28_A	50_L	0.868	0.99
24_L	148_Y	0.867	0.99
84_C	90_E	0.866	0.99
23_E	26_E	0.863	0.99
141_F	157_V	0.858	0.99
125_G	156_K	0.853	0.99
19_E	53_V	0.850	0.99
116_I	120_M	0.841	0.99
55_V	65_T	0.840	0.99
142_A	146_P	0.838	0.99
32_V	58_A	0.834	0.99
144_S	147_D	0.833	0.99
118_I	157_V	0.827	0.99
130_A	141_F	0.826	0.99
129_Y	170_I	0.825	0.99
31_F	108_L	0.821	0.99
99_V	121_A	0.805	0.99
83_I	87_S	0.804	0.99
153_K	156_K	0.802	0.99
57_E	60_R	0.801	0.99
16_H	20_S	0.800	0.99
168_E	171_C	0.797	0.99
99_V	124_M	0.795	0.99
82_V	90_E	0.794	0.99
44_L	65_T	0.790	0.99
119_M	123_A	0.781	0.98
41_I	63_I	0.780	0.98
95_S	120_M	0.775	0.98
122_Y	156_K	0.773	0.98
125_G	173_D	0.773	0.98
47_Y	69_L	0.767	0.98
145_F	154_I	0.766	0.98
32_V	42_L	0.753	0.98
71_I	74_E	0.752	0.98
104_L	127_P	0.751	0.98
105_L	121_A	0.746	0.98
108_L	131_L	0.741	0.98
122_Y	157_V	0.739	0.98
33_R	57_E	0.739	0.98
85_I	89_C	0.731	0.98
99_V	105_L	0.730	0.98
112_V	153_K	0.728	0.97
160_F	163_V	0.727	0.97
115_E	137_S	0.719	0.97
134_T	138_T	0.718	0.97
73_K	77_E	0.712	0.97
131_L	160_F	0.708	0.97
59_L	65_T	0.707	0.97
10_I	101_S	0.705	0.97
119_M	145_F	0.703	0.97
136_L	139_D	0.699	0.97
31_F	35_I	0.697	0.97
48_W	52_R	0.693	0.97
161_D	165_R	0.692	0.97
83_I	91_F	0.683	0.96
104_L	129_Y	0.672	0.96
40_P	171_C	0.669	0.96
81_E	84_C	0.667	0.96
30_K	162_N	0.667	0.96
64_K	83_I	0.660	0.96
116_I	123_A	0.657	0.95
22_H	25_A	0.657	0.95
10_I	43_L	0.652	0.95
131_L	163_V	0.651	0.95
98_L	107_S	0.647	0.95
53_V	56_D	0.645	0.95
16_H	148_Y	0.644	0.95
13_I	31_F	0.642	0.95
71_I	87_S	0.637	0.95
66_V	85_I	0.636	0.95
24_L	50_L	0.632	0.94
125_G	153_K	0.632	0.94
19_E	148_Y	0.629	0.94
120_M	123_A	0.628	0.94
129_Y	167_A	0.627	0.94
91_F	96_V	0.627	0.94
56_D	59_L	0.626	0.94
84_C	89_C	0.626	0.94
130_A	159_Y	0.624	0.94
68_I	98_L	0.624	0.94
44_L	55_V	0.621	0.94
69_L	77_E	0.620	0.94
59_L	78_I	0.618	0.94
102_G	105_L	0.616	0.94
139_D	145_F	0.612	0.93
68_I	101_S	0.609	0.93
59_L	81_E	0.609	0.93
164_E	168_E	0.604	0.93
27_K	31_F	0.603	0.93
50_L	108_L	0.599	0.93
152_R	155_V	0.592	0.92
38_C	167_A	0.591	0.92
156_K	173_D	0.585	0.92
165_R	168_E	0.585	0.92
72_E	122_Y	0.584	0.92
120_M	124_M	0.580	0.91
107_S	114_T	0.576	0.91
137_S	144_S	0.574	0.91
28_A	54_V	0.570	0.91
84_C	87_S	0.570	0.91
82_V	91_F	0.566	0.90
10_I	66_V	0.565	0.90
36_K	57_E	0.563	0.90
13_I	42_L	0.562	0.90
66_V	83_I	0.554	0.89
54_V	58_A	0.546	0.89
69_L	84_C	0.544	0.89
103_D	126_K	0.543	0.88
141_F	145_F	0.537	0.88
166_M	170_I	0.533	0.88
107_S	130_A	0.529	0.87
121_A	126_K	0.524	0.87
169_E	172_E	0.522	0.86
99_V	116_I	0.518	0.86
86_K	89_C	0.515	0.86
150_D	153_K	0.514	0.86
154_I	157_V	0.514	0.86
43_L	98_L	0.509	0.85
44_L	49_G	0.509	0.85
82_V	87_S	0.508	0.85
82_V	89_C	0.508	0.85
27_K	108_L	0.505	0.85
84_C	91_F	0.503	0.84
112_V	123_A	0.500	0.84

Legend: The i and j are positions as given in the UniProt sequence. Only predictions with Prob ≥ 0.7 are listed. For all 3L/2 predictions, click on one of the links below.

Sco = ((raw_sco - min_sco)/(avg_sco - min_sco))/2 + 0.5
Prob = P(contact | Sco, seq80/√len)
seq80 = effective number of sequences, after reducing redundancy to 80% identity

Text file of predictions (all 3L/2 predictions)
Generate restraints for ROSETTA Structure Modeling
Upload PDB model overlay contacts on the model

HHsearch Results:

Legend: GREMLIN results (Prob ≥ 0.7) overlaid on top PDB hits. The grey/red filled circles underneath are pdb residue contacts (min distance < 5 Angstroms). The shade of the circles is based on the top 10 (or top 20 if e-value < 1E-20) HHsearch results which uses the overall probability and per-site alignment prob. Inter oligomeric contacts in the pdb are in shades of red.

PDB	Chains	Cov	%	HHΔ
5ajtA	2	0.9508	100	0.209	Contact Map
3bq9A	3	0.9891	100	0.226	Contact Map
3gh1A	3	0.9891	100	0.233	Contact Map
1ydhA	2	0.9235	100	0.248	Contact Map
2a33A	2	0.8962	100	0.263	Contact Map
1t35A	5	0.918	100	0.284	Contact Map
3sbxA	2	0.8907	100	0.296	Contact Map
1wekA	5	0.929	100	0.315	Contact Map
3quaA	2	0.9016	100	0.338	Contact Map
1rcuA	3	0.8852	100	0.351	Contact Map

Sequence Conservation (Image Generated using WebLogo v3)

Legend: Color is used to show Hydrophobicity (Blue: Hydrophilic, Green: Neutral and Black: Hydrophobic). Amount of gaps is represented by width.

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