GREMLIN Database
Q97YP5 - Oligo/dipeptide transport, ATP binding protein . carboxy-end. (DppF-2)
UniProt: Q97YP5 Sequences:
Download Alignment
We filter this alignment to remove sites that have many gaps before running GREMLIN.

Date: 2015_01
Length: 103 (100)
Sequences: 14016 (10263)
Seq/√Len: 1026.3

GREMLIN Results:

Legend: The darker and larger the blue dots, the higher coevolution strength.

Residue pairs sorted by coevolution strength:
i j Sco Prob
79_K102_L3.6441.00
7_R19_I3.0371.00
9_G16_V2.9091.00
15_K86_P2.5941.00
21_T24_E2.3331.00
72_Y83_K2.3071.00
78_A83_K2.2871.00
81_I101_H2.1051.00
19_I97_Y2.0781.00
20_G25_V2.0091.00
35_Q77_F1.9721.00
81_I85_K1.9421.00
15_K70_V1.9211.00
9_G19_I1.8371.00
39_Q53_P1.8151.00
70_V86_P1.7361.00
15_K99_A1.7271.00
89_I99_A1.6681.00
85_K101_H1.6331.00
91_R97_Y1.5991.00
25_V34_T1.5571.00
36_A55_I1.4921.00
80_D83_K1.4611.00
89_I97_Y1.4471.00
56_K76_P1.4271.00
75_C82_C1.4051.00
72_Y78_A1.3691.00
43_V46_P1.3691.00
35_Q39_Q1.3561.00
69_C75_C1.3371.00
80_D84_E1.3211.00
23_E27_S1.3201.00
67_K72_Y1.3141.00
81_I102_L1.3021.00
77_F102_L1.2971.00
8_I22_P1.2861.00
91_R94_G1.2841.00
65_L70_V1.2791.00
30_L98_V1.2531.00
30_L92_I1.2231.00
69_C82_C1.1551.00
24_E93_K1.1521.00
17_V70_V1.1331.00
87_P101_H1.1291.00
75_C100_C1.1121.00
91_R95_D1.1071.00
24_E96_H1.0921.00
24_E28_E1.0571.00
16_V19_I1.0511.00
69_C100_C1.0491.00
20_G96_H1.0251.00
28_E93_K1.0131.00
5_H22_P0.9991.00
17_V31_H0.9991.00
82_C100_C0.9781.00
55_I71_F0.9561.00
67_K84_E0.9201.00
13_L59_I0.9191.00
62_P65_L0.9071.00
53_P76_P0.8851.00
13_L62_P0.8821.00
13_L65_L0.8791.00
30_L96_H0.8771.00
79_K101_H0.8671.00
19_I89_I0.8591.00
92_I98_V0.8561.00
61_S64_E0.8541.00
32_P77_F0.8391.00
86_P99_A0.8361.00
28_E96_H0.8211.00
26_I38_L0.8171.00
81_I84_E0.8161.00
90_K101_H0.8031.00
66_P72_Y0.7991.00
20_G24_E0.7801.00
36_A57_G0.7781.00
20_G26_I0.7711.00
36_A71_F0.7691.00
43_V48_I0.7681.00
8_I26_I0.7671.00
41_V44_P0.7641.00
52_E55_I0.7621.00
36_A40_A0.7571.00
44_P48_I0.7521.00
39_Q76_P0.7491.00
20_G29_P0.7421.00
24_E27_S0.7291.00
5_H41_V0.7151.00
21_T95_D0.7081.00
36_A76_P0.7031.00
54_N59_I0.7021.00
93_K96_H0.7021.00
30_L93_K0.7001.00
68_G72_Y0.6891.00
79_K83_K0.6761.00
13_L57_G0.6751.00
45_D48_I0.6671.00
35_Q76_P0.6671.00
57_G60_Q0.6621.00
90_K102_L0.6621.00
11_M17_V0.6601.00
24_E94_G0.6561.00
88_E99_A0.6541.00
24_E95_D0.6491.00
38_L41_V0.6401.00
13_L58_E0.6331.00
3_K26_I0.6321.00
66_P73_S0.6311.00
85_K88_E0.6281.00
60_Q66_P0.6231.00
86_P101_H0.6211.00
26_I29_P0.6191.00
61_S65_L0.6181.00
92_I97_Y0.6071.00
13_L60_Q0.6071.00
59_I73_S0.6031.00
22_P26_I0.5951.00
92_I96_H0.5881.00
67_K83_K0.5851.00
29_P38_L0.5831.00
7_R16_V0.5791.00
91_R96_H0.5791.00
10_V25_V0.5621.00
32_P75_C0.5611.00
97_Y101_H0.5601.00
90_K98_V0.5561.00
59_I62_P0.5561.00
46_P50_I0.5511.00
9_G17_V0.5511.00
43_V47_D0.5501.00
39_Q52_E0.5471.00
41_V45_D0.5451.00
73_S78_A0.5411.00
78_A81_I0.5401.00
16_V89_I0.5371.00
64_E67_K0.5331.00
42_P52_E0.5301.00
59_I70_V0.5261.00
98_V102_L0.5251.00
8_I20_G0.5241.00
62_P66_P0.5231.00
88_E101_H0.5171.00
30_L35_Q0.5141.00
4_H22_P0.5121.00
47_D50_I0.5121.00
22_P25_V0.5121.00
51_K54_N0.5111.00
13_L61_S0.5011.00
85_K90_K0.5011.00
15_K88_E0.5001.00
Legend: The i and j are positions as given in the UniProt sequence. Only predictions with Prob ≥ 0.7 are listed. For all 3L/2 predictions, click on one of the links below.

Sco = ((raw_sco - min_sco)/(avg_sco - min_sco))/2 + 0.5
Prob = P(contact | Sco, seq80/√len)
seq80 = effective number of sequences, after reducing redundancy to 80% identity

HHsearch Results:
Legend: GREMLIN results (Prob ≥ 0.7) overlaid on top PDB hits. The grey/red filled circles underneath are pdb residue contacts (min distance < 5 Angstroms). The shade of the circles is based on the top 10 (or top 20 if e-value < 1E-20) HHsearch results which uses the overall probability and per-site alignment prob. Inter oligomeric contacts in the pdb are in shades of red.
PDB Chains Cov % HHΔ  
4fwiB 1 0.8932 99.9 0.294 Contact Map
3cmwA 1 0.7282 98.8 0.695 Contact Map
3tuiC 2 0.9126 98.2 0.743 Contact Map
3pihA 2 0.3981 98 0.758 Contact Map
2oljA 2 0.4078 97.9 0.761 Contact Map
1b0uA 2 0.4563 97.8 0.765 Contact Map
4ymuJ 2 0.4078 97.8 0.766 Contact Map
4u00A 1 0.4175 97.7 0.775 Contact Map
3zqjA 1 0.3981 97.5 0.78 Contact Map
1oxxK 1 0.8835 97.5 0.781 Contact Map

Sequence Conservation (Image Generated using WebLogo v3)
Legend: Color is used to show Hydrophobicity (Blue: Hydrophilic, Green: Neutral and Black: Hydrophobic). Amount of gaps is represented by width.

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