Q97YN5 - SULSO - GREMLIN Contacts

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Q97YN5 - Uncharacterized protein

UniProt:	Q97YN5	Sequences: MRNSLLVFTLDCQVKIDSKTVDCQTNIDSFLTPNSNLIIVEVEEIKRILLDQESFLNDKLRKERIITRHYNYSITYNNAYLITGPRRAGKSIFTVQLTKGKEILRVDFDDERLSGIKANELNKFLEAGYQIKKKIEVIILDEIQNVKGWELFVSRIREIYPVIVTGSNARLMSSEMATYLTGRHMDFLVFPFSFKEYLRYKDVKVEETTRGIARLKEELRNYLQQGGFPETFKFDKNEYLRNLYSDIITRDVIIRCKTRKDVKGLADFLLENIGKEVSTRRVGNAFNLSHQSVENYFYCLSNAYLFLFVKRFTGKSLERYTLPRKVYVIDTGLFNTYKRLQMGKMIENLVFLELYKRYGQEVYYYSNGNAEVDFIIKDKFAIQVTYDEGGIDDREYKGLVRFSERFKDYKLIIITWDREGKEIRNGKEITLIPLWKFLVKERFAGEMIGKES	Download Alignment We filter this alignment to remove sites that have many gaps before running GREMLIN. Date: 2015_01
Length:	452 (365)
Sequences:	4124 (3390)
Seq/√Len:	177.4

SULSO - Q97YN5 Q97Y74 Q97YZ4 Q97YB3

GREMLIN Results:

Legend: The darker and larger the blue dots, the higher coevolution strength.

Residue pairs sorted by coevolution strength:

i	j	Sco	Prob
108_F	140_L	3.837	1.00
79_A	157_R	3.387	1.00
280_R	284_N	3.377	1.00
93_F	189_V	3.247	1.00
350_V	384_V	3.208	1.00
85_P	88_A	3.195	1.00
301_S	308_F	3.186	1.00
96_Q	99_K	3.077	1.00
153_V	164_V	2.900	1.00
273_I	348_N	2.899	1.00
95_V	105_R	2.736	1.00
94_T	165_T	2.669	1.00
101_K	135_I	2.555	1.00
65_I	93_F	2.552	1.00
193_S	356_K	2.429	1.00
94_T	163_I	2.425	1.00
82_I	94_T	2.420	1.00
354_L	374_F	2.348	1.00
67_T	71_N	2.286	1.00
346_I	434_L	2.282	1.00
70_Y	100_G	2.263	1.00
351_F	374_F	2.240	1.00
78_N	230_E	2.239	1.00
410_K	430_T	2.174	1.00
403_S	411_L	2.090	1.00
79_A	153_V	2.087	1.00
270_L	328_V	2.058	1.00
223_L	349_L	2.029	1.00
400_V	427_K	2.028	1.00
154_S	158_E	2.004	1.00
67_T	70_Y	1.974	1.00
110_D	159_I	1.961	1.00
288_L	293_V	1.949	1.00
201_K	221_N	1.942	1.00
243_L	247_I	1.934	1.00
98_T	139_I	1.915	1.00
94_T	139_I	1.903	1.00
244_Y	247_I	1.894	1.00
298_Y	301_S	1.853	1.00
120_E	123_K	1.849	1.00
301_S	306_F	1.817	1.00
380_F	412_I	1.805	1.00
279_T	294_E	1.800	1.00
374_F	384_V	1.799	1.00
353_E	357_R	1.791	1.00
372_V	402_F	1.789	1.00
85_P	329_I	1.783	1.00
307_L	355_Y	1.769	1.00
370_A	401_R	1.753	1.00
298_Y	302_N	1.738	1.00
381_A	411_L	1.738	1.00
240_L	332_G	1.735	1.00
327_Y	348_N	1.709	1.00
413_I	431_L	1.693	1.00
192_F	200_Y	1.683	1.00
83_T	304_Y	1.671	1.00
194_F	222_Y	1.663	1.00
375_I	381_A	1.653	1.00
269_L	306_F	1.638	1.00
77_N	157_R	1.630	1.00
350_V	434_L	1.627	1.00
351_F	362_V	1.613	1.00
85_P	228_F	1.612	1.00
312_F	375_I	1.609	1.00
198_L	218_E	1.588	1.00
92_I	96_Q	1.585	1.00
197_Y	232_F	1.581	1.00
367_N	370_A	1.581	1.00
64_R	193_S	1.577	1.00
308_F	324_R	1.562	1.00
412_I	432_I	1.558	1.00
286_F	293_V	1.540	1.00
361_E	377_K	1.538	1.00
241_R	245_S	1.523	1.00
308_F	326_V	1.523	1.00
382_I	414_I	1.520	1.00
239_Y	243_L	1.516	1.00
106_V	113_L	1.512	1.00
230_E	234_F	1.509	1.00
88_A	189_V	1.506	1.00
146_V	149_W	1.479	1.00
307_L	329_I	1.473	1.00
318_E	321_T	1.470	1.00
382_I	412_I	1.452	1.00
64_R	195_K	1.452	1.00
414_I	432_I	1.450	1.00
365_Y	370_A	1.447	1.00
393_D	397_K	1.431	1.00
237_N	241_R	1.428	1.00
238_E	241_R	1.422	1.00
266_A	300_L	1.418	1.00
352_L	356_K	1.415	1.00
62_K	65_I	1.413	1.00
309_V	327_Y	1.410	1.00
249_T	253_I	1.403	1.00
194_F	215_L	1.383	1.00
68_R	71_N	1.346	1.00
389_G	393_D	1.344	1.00
98_T	137_V	1.333	1.00
218_E	221_N	1.329	1.00
238_E	242_N	1.328	1.00
74_I	78_N	1.323	1.00
245_S	249_T	1.317	1.00
194_F	197_Y	1.316	1.00
265_L	296_Y	1.309	1.00
237_N	244_Y	1.309	1.00
102_E	134_K	1.308	1.00
268_F	272_N	1.302	1.00
348_N	352_L	1.301	1.00
138_I	162_V	1.286	1.00
81_L	184_H	1.282	1.00
309_V	351_F	1.280	1.00
98_T	103_I	1.278	1.00
241_R	244_Y	1.275	1.00
370_A	397_K	1.271	1.00
182_G	371_E	1.268	1.00
242_N	246_D	1.261	1.00
153_V	162_V	1.259	1.00
281_R	284_N	1.256	1.00
353_E	356_K	1.256	1.00
297_F	326_V	1.255	1.00
245_S	263_K	1.254	1.00
214_R	217_E	1.246	1.00
241_R	336_T	1.245	1.00
223_L	345_M	1.243	1.00
283_G	293_V	1.239	1.00
158_E	183_R	1.236	1.00
222_Y	227_G	1.229	1.00
363_Y	377_K	1.229	1.00
145_N	151_L	1.213	1.00
203_V	218_E	1.197	1.00
105_R	139_I	1.196	1.00
242_N	245_S	1.195	1.00
63_E	67_T	1.191	1.00
82_I	189_V	1.191	1.00
219_L	349_L	1.190	1.00
372_V	398_G	1.187	1.00
225_Q	231_T	1.187	1.00
292_S	296_Y	1.178	1.00
290_H	294_E	1.165	1.00
414_I	434_L	1.164	1.00
142_E	167_S	1.160	1.00
276_E	323_P	1.154	1.00
96_Q	100_G	1.152	1.00
88_A	228_F	1.144	1.00
65_I	189_V	1.141	1.00
142_E	183_R	1.140	1.00
166_G	183_R	1.137	1.00
342_M	386_Y	1.132	1.00
264_G	267_D	1.129	1.00
194_F	218_E	1.127	1.00
220_R	224_Q	1.112	1.00
188_L	304_Y	1.108	1.00
421_K	430_T	1.102	1.00
237_N	243_L	1.101	1.00
109_D	154_S	1.099	1.00
346_I	384_V	1.097	1.00
309_V	364_Y	1.093	1.00
289_S	292_S	1.090	1.00
351_F	355_Y	1.089	1.00
121_L	128_G	1.088	1.00
83_T	186_D	1.086	1.00
190_F	307_L	1.085	1.00
124_F	128_G	1.084	1.00
309_V	362_V	1.074	1.00
87_R	182_G	1.074	1.00
231_T	240_L	1.073	1.00
396_Y	400_V	1.072	1.00
403_S	428_E	1.070	1.00
114_S	151_L	1.067	1.00
144_Q	166_G	1.067	1.00
197_Y	218_E	1.064	1.00
217_E	221_N	1.064	1.00
265_L	293_V	1.060	1.00
403_S	408_D	1.049	1.00
95_V	159_I	1.047	1.00
104_L	107_D	1.045	1.00
118_A	121_L	1.045	1.00
269_L	297_F	1.041	1.00
121_L	124_F	1.040	1.00
279_T	297_F	1.037	1.00
216_K	220_R	1.035	0.99
334_F	341_Q	1.034	0.99
283_G	290_H	1.031	0.99
282_V	286_F	1.030	0.99
380_F	410_K	1.024	0.99
181_T	254_I	1.018	0.99
402_F	406_F	1.016	0.99
325_K	347_E	1.016	0.99
219_L	223_L	1.009	0.99
381_A	403_S	1.008	0.99
265_L	282_V	0.997	0.99
122_N	126_E	0.990	0.99
66_I	69_H	0.989	0.99
359_G	362_V	0.989	0.99
400_V	411_L	0.988	0.99
140_L	153_V	0.981	0.99
139_I	163_I	0.980	0.99
197_Y	221_N	0.980	0.99
191_P	329_I	0.977	0.99
280_R	290_H	0.976	0.99
111_E	114_S	0.971	0.99
397_K	401_R	0.970	0.99
123_K	126_E	0.969	0.99
244_Y	266_A	0.966	0.99
166_G	343_G	0.965	0.99
256_C	299_C	0.964	0.99
311_R	322_L	0.953	0.99
275_K	344_K	0.952	0.99
63_E	66_I	0.951	0.99
66_I	70_Y	0.945	0.99
140_L	162_V	0.944	0.99
73_S	97_L	0.943	0.99
225_Q	236_K	0.934	0.99
139_I	165_T	0.934	0.99
194_F	198_L	0.932	0.99
86_R	142_E	0.923	0.99
307_L	352_L	0.923	0.99
190_F	356_K	0.918	0.99
174_S	302_N	0.911	0.99
80_Y	163_I	0.907	0.99
119_N	122_N	0.905	0.99
138_I	160_Y	0.903	0.99
195_K	199_R	0.903	0.99
198_L	215_L	0.902	0.99
334_F	345_M	0.899	0.99
191_P	227_G	0.899	0.99
220_R	342_M	0.895	0.99
142_E	383_Q	0.894	0.99
263_K	267_D	0.892	0.98
250_R	254_I	0.887	0.98
270_L	337_Y	0.887	0.98
102_E	132_K	0.886	0.98
262_V	300_L	0.884	0.98
236_K	244_Y	0.884	0.98
279_T	290_H	0.883	0.98
131_I	134_K	0.879	0.98
174_S	177_A	0.871	0.98
183_R	373_D	0.869	0.98
335_N	345_M	0.869	0.98
222_Y	349_L	0.869	0.98
223_L	342_M	0.869	0.98
280_R	283_G	0.868	0.98
192_F	197_Y	0.867	0.98
371_E	383_Q	0.866	0.98
219_L	434_L	0.866	0.98
88_A	191_P	0.862	0.98
327_Y	374_F	0.858	0.98
150_E	184_H	0.857	0.98
347_E	371_E	0.856	0.98
79_A	164_V	0.856	0.98
398_G	402_F	0.855	0.98
125_L	152_F	0.852	0.98
371_E	385_T	0.852	0.98
354_L	362_V	0.851	0.98
297_F	308_F	0.847	0.98
243_L	248_I	0.846	0.98
103_I	137_V	0.845	0.98
312_F	377_K	0.845	0.98
354_L	382_I	0.844	0.98
158_E	179_Y	0.844	0.98
87_R	180_L	0.843	0.98
64_R	67_T	0.843	0.98
347_E	383_Q	0.841	0.98
86_R	166_G	0.839	0.98
108_F	149_W	0.838	0.98
142_E	343_G	0.837	0.98
82_I	93_F	0.836	0.98
267_D	337_Y	0.835	0.98
143_I	150_E	0.835	0.98
126_E	129_Y	0.834	0.98
110_D	158_E	0.832	0.98
83_T	188_L	0.831	0.98
73_S	185_M	0.831	0.98
69_H	97_L	0.831	0.98
408_D	411_L	0.830	0.98
384_V	414_I	0.824	0.97
193_S	196_E	0.824	0.97
115_G	119_N	0.821	0.97
166_G	182_G	0.819	0.97
103_I	139_I	0.818	0.97
110_D	155_R	0.818	0.97
102_E	108_F	0.816	0.97
269_L	326_V	0.813	0.97
307_L	351_F	0.810	0.97
196_E	199_R	0.808	0.97
372_V	381_A	0.806	0.97
175_E	255_R	0.805	0.97
142_E	166_G	0.802	0.97
267_D	271_E	0.801	0.97
398_G	401_R	0.801	0.97
111_E	115_G	0.801	0.97
253_I	258_T	0.798	0.97
188_L	355_Y	0.796	0.97
225_Q	232_F	0.795	0.97
66_I	93_F	0.795	0.97
343_G	385_T	0.794	0.97
80_Y	185_M	0.791	0.97
331_T	335_N	0.786	0.97
387_D	391_I	0.786	0.97
421_K	431_L	0.785	0.97
295_N	299_C	0.784	0.97
415_T	419_E	0.783	0.97
262_V	299_C	0.779	0.96
181_T	184_H	0.779	0.96
392_D	396_Y	0.777	0.96
175_E	178_T	0.776	0.96
262_V	296_Y	0.775	0.96
266_A	328_V	0.775	0.96
241_R	247_I	0.773	0.96
426_G	431_L	0.771	0.96
386_Y	416_W	0.769	0.96
197_Y	200_Y	0.768	0.96
125_L	156_I	0.768	0.96
221_N	225_Q	0.765	0.96
391_I	394_R	0.762	0.96
350_V	414_I	0.761	0.96
111_E	155_R	0.761	0.96
185_M	242_N	0.758	0.96
425_N	431_L	0.758	0.96
328_V	348_N	0.756	0.96
343_G	347_E	0.752	0.96
137_V	163_I	0.752	0.96
351_F	384_V	0.751	0.96
411_L	428_E	0.750	0.96
365_Y	402_F	0.749	0.96
412_I	430_T	0.748	0.96
77_N	185_M	0.747	0.96
273_I	334_F	0.747	0.96
420_G	431_L	0.745	0.95
404_E	407_K	0.744	0.95
62_K	67_T	0.742	0.95
117_K	121_L	0.742	0.95
142_E	371_E	0.740	0.95
372_V	399_L	0.740	0.95
94_T	98_T	0.739	0.95
381_A	406_F	0.738	0.95
108_F	146_V	0.738	0.95
252_V	256_C	0.737	0.95
237_N	245_S	0.736	0.95
291_Q	294_E	0.735	0.95
140_L	143_I	0.735	0.95
236_K	240_L	0.734	0.95
260_K	295_N	0.729	0.95
231_T	239_Y	0.728	0.95
64_R	68_R	0.727	0.95
151_L	154_S	0.723	0.95
331_T	352_L	0.717	0.94
78_N	157_R	0.716	0.94
366_S	369_N	0.714	0.94
244_Y	337_Y	0.713	0.94
349_L	353_E	0.713	0.94
181_T	246_D	0.712	0.94
87_R	166_G	0.712	0.94
331_T	348_N	0.712	0.94
68_R	185_M	0.712	0.94
79_A	162_V	0.711	0.94
262_V	265_L	0.704	0.94
327_Y	351_F	0.703	0.94
397_K	400_V	0.702	0.94
244_Y	248_I	0.701	0.94
145_N	179_Y	0.701	0.94
274_G	327_Y	0.700	0.94
276_E	364_Y	0.698	0.94
214_R	218_E	0.697	0.94
85_P	190_F	0.697	0.94
268_F	282_V	0.696	0.94
103_I	107_D	0.696	0.94
121_L	125_L	0.696	0.94
254_I	257_K	0.695	0.93
249_T	267_D	0.694	0.93
264_G	294_E	0.694	0.93
272_N	275_K	0.693	0.93
376_I	380_F	0.692	0.93
258_T	262_V	0.691	0.93
117_K	120_E	0.690	0.93
190_F	355_Y	0.689	0.93
132_K	135_I	0.687	0.93
148_G	151_L	0.687	0.93
401_R	404_E	0.686	0.93
426_G	430_T	0.683	0.93
387_D	390_G	0.682	0.93
201_K	218_E	0.682	0.93
373_D	383_Q	0.680	0.93
268_F	285_A	0.679	0.93
276_E	279_T	0.677	0.93
107_D	158_E	0.674	0.92
400_V	404_E	0.673	0.92
87_R	371_E	0.668	0.92
391_I	398_G	0.668	0.92
313_T	318_E	0.668	0.92
256_C	259_R	0.666	0.92
200_Y	232_F	0.665	0.92
258_T	299_C	0.665	0.92
315_K	318_E	0.663	0.92
415_T	418_R	0.657	0.91
315_K	322_L	0.657	0.91
81_L	164_V	0.656	0.91
109_D	155_R	0.655	0.91
374_F	382_I	0.653	0.91
166_G	373_D	0.652	0.91
71_N	97_L	0.651	0.91
265_L	297_F	0.650	0.91
215_L	218_E	0.650	0.91
360_Q	376_I	0.650	0.91
198_L	222_Y	0.647	0.91
392_D	413_I	0.646	0.91
81_L	186_D	0.646	0.91
98_T	105_R	0.642	0.90
155_R	159_I	0.642	0.90
192_F	229_P	0.639	0.90
74_I	163_I	0.638	0.90
182_G	385_T	0.636	0.90
69_H	80_Y	0.631	0.90
426_G	429_I	0.630	0.90
339_R	343_G	0.628	0.89
253_I	256_C	0.627	0.89
228_F	329_I	0.625	0.89
191_P	330_D	0.624	0.89
123_K	127_A	0.624	0.89
248_I	266_A	0.624	0.89
197_Y	222_Y	0.618	0.89
216_K	416_W	0.618	0.89
210_R	213_A	0.618	0.89
77_N	242_N	0.617	0.89
64_R	70_Y	0.615	0.88
319_R	377_K	0.615	0.88
393_D	400_V	0.613	0.88
277_V	282_V	0.607	0.88
396_Y	413_I	0.607	0.88
117_K	124_F	0.606	0.88
167_S	182_G	0.605	0.88
300_L	306_F	0.604	0.88
111_E	152_F	0.603	0.88
297_F	306_F	0.602	0.87
221_N	236_K	0.601	0.87
333_L	337_Y	0.601	0.87
261_D	264_G	0.599	0.87
82_I	163_I	0.599	0.87
345_M	349_L	0.598	0.87
399_L	403_S	0.596	0.87
145_N	254_I	0.595	0.87
108_F	113_L	0.594	0.87
178_T	255_R	0.594	0.87
213_A	217_E	0.593	0.87
168_N	173_S	0.592	0.87
228_F	331_T	0.592	0.87
403_S	406_F	0.591	0.86
388_E	391_I	0.590	0.86
171_L	175_E	0.589	0.86
65_I	68_R	0.589	0.86
367_N	401_R	0.586	0.86
238_E	243_L	0.586	0.86
354_L	358_Y	0.586	0.86
331_T	345_M	0.586	0.86
265_L	286_F	0.585	0.86
144_Q	251_D	0.585	0.86
402_F	408_D	0.581	0.86
384_V	434_L	0.580	0.85
273_I	328_V	0.578	0.85
293_V	297_F	0.576	0.85
110_D	113_L	0.576	0.85
151_L	178_T	0.576	0.85
230_E	233_K	0.576	0.85
154_S	157_R	0.574	0.85
63_E	199_R	0.574	0.85
343_G	373_D	0.573	0.85
401_R	405_R	0.572	0.85
249_T	258_T	0.572	0.85
228_F	231_T	0.571	0.85
343_G	383_Q	0.571	0.85
169_A	172_M	0.569	0.84
269_L	328_V	0.569	0.84
193_S	197_Y	0.569	0.84
240_L	243_L	0.568	0.84
346_I	416_W	0.566	0.84
281_R	338_K	0.563	0.84
367_N	398_G	0.563	0.84
92_I	95_V	0.562	0.84
381_A	409_Y	0.561	0.84
292_S	295_N	0.561	0.84
122_N	155_R	0.558	0.83
80_Y	187_F	0.557	0.83
194_F	435_W	0.551	0.82
256_C	302_N	0.551	0.82
93_F	192_F	0.549	0.82
240_L	244_Y	0.548	0.82
311_R	323_P	0.548	0.82
67_T	100_G	0.546	0.82
188_L	307_L	0.546	0.82
125_L	210_R	0.546	0.82
325_K	364_Y	0.545	0.82
70_Y	73_S	0.545	0.82
122_N	125_L	0.544	0.82
194_F	349_L	0.544	0.82
62_K	70_Y	0.543	0.82
412_I	418_R	0.543	0.82
329_I	352_L	0.543	0.82
373_D	385_T	0.542	0.81
288_L	295_N	0.541	0.81
268_F	286_F	0.541	0.81
197_Y	225_Q	0.540	0.81
251_D	325_K	0.540	0.81
415_T	431_L	0.539	0.81
104_L	108_F	0.537	0.81
387_D	416_W	0.535	0.81
332_G	335_N	0.535	0.81
400_V	426_G	0.534	0.80
231_T	234_F	0.534	0.80
265_L	288_L	0.534	0.80
281_R	285_A	0.533	0.80
87_R	183_R	0.532	0.80
128_G	131_I	0.532	0.80
142_E	385_T	0.531	0.80
131_I	136_E	0.531	0.80
154_S	170_R	0.529	0.80
385_T	391_I	0.526	0.79
309_V	374_F	0.525	0.79
167_S	183_R	0.524	0.79
305_L	328_V	0.523	0.79
331_T	349_L	0.523	0.79
253_I	263_K	0.522	0.79
203_V	214_R	0.522	0.79
284_N	290_H	0.521	0.79
82_I	198_L	0.518	0.78
118_A	125_L	0.518	0.78
297_F	301_S	0.518	0.78
193_S	352_L	0.516	0.78
150_E	178_T	0.513	0.78
347_E	385_T	0.513	0.78
168_N	172_M	0.512	0.78
338_K	341_Q	0.511	0.78
78_N	161_P	0.511	0.78
419_E	431_L	0.511	0.78
191_P	228_F	0.510	0.77
72_Y	235_D	0.509	0.77
251_D	255_R	0.508	0.77
192_F	196_E	0.507	0.77
72_Y	78_N	0.507	0.77
283_G	286_F	0.506	0.77
237_N	242_N	0.504	0.77
365_Y	406_F	0.504	0.77
182_G	383_Q	0.503	0.76
362_V	374_F	0.503	0.76
282_V	293_V	0.502	0.76
368_G	405_R	0.501	0.76
306_F	326_V	0.500	0.76
343_G	386_Y	0.500	0.76

Legend: The i and j are positions as given in the UniProt sequence. Only predictions with Prob ≥ 0.7 are listed. For all 3L/2 predictions, click on one of the links below.

Sco = ((raw_sco - min_sco)/(avg_sco - min_sco))/2 + 0.5
Prob = P(contact | Sco, seq80/√len)
seq80 = effective number of sequences, after reducing redundancy to 80% identity

Text file of predictions (all 3L/2 predictions)
Generate restraints for ROSETTA Structure Modeling
Upload PDB model overlay contacts on the model

HHsearch Results:

Legend: GREMLIN results (Prob ≥ 0.7) overlaid on top PDB hits. The grey/red filled circles underneath are pdb residue contacts (min distance < 5 Angstroms). The shade of the circles is based on the top 10 (or top 20 if e-value < 1E-20) HHsearch results which uses the overall probability and per-site alignment prob. Inter oligomeric contacts in the pdb are in shades of red.

PDB	Chains	Cov	%	HHΔ
2fnaA	1	0.5973	100	0.716	Contact Map
2qenA	1	0.6106	100	0.724	Contact Map
3pfiA	3	0.5929	99.8	0.816	Contact Map
1hqcA	1	0.5951	99.7	0.827	Contact Map
1w5sA	1	0.6549	99.6	0.838	Contact Map
1fnnA	1	0.6416	99.6	0.841	Contact Map
1in4A	1	0.5973	99.4	0.856	Contact Map
2qbyA	1	0.6305	99.4	0.858	Contact Map
3te6A	1	0.5509	99.4	0.86	Contact Map
2v1uA	1	0.6704	99.4	0.861	Contact Map

Sequence Conservation (Image Generated using WebLogo v3)

Legend: Color is used to show Hydrophobicity (Blue: Hydrophilic, Green: Neutral and Black: Hydrophobic). Amount of gaps is represented by width.

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