Q97YN4 - SULSO - GREMLIN Contacts

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Q97YN4 - Uncharacterized protein

UniProt:	Q97YN4	Sequences: MNYCIYATVFNNAPTLEESVKSVWRSDVTIVITDNYSTDSTWERLLELRKDYNLVLYRLKSTRGKGRGYSLKHCPENSITTYFDLDMRYNESFHKILEWAPRDKKILVNLVNGFVVKRETILEKGSWRDLNRAEDWEIVSRVGFDYFVPALIHAELRNELAREKRYAKGLKYYGRRFKNKLDVIRGLGYNWSDMKIAYSQHSIPYKIFVNAPSFVLAKLMGIYRNYKEYNNGVGTILSALDRMIDLKEIGINDKYFLFGGYWGFFSAYNLDKIIDEKLPSKVGRVRKLICNDDGLRYIKTLDGFDIIKLASFLKDKLECKEFNL	Download Alignment We filter this alignment to remove sites that have many gaps before running GREMLIN. Date: 2015_01
Length:	324 (259)
Sequences:	3147 (3057)
Seq/√Len:	190.0

ECOLI - YIBD
BACSU - GGAA YFNE GGAB CGED EPSH EPSJ TAGF EPSE
HALSA - Q9HSC8 Q9HQP4
SULSO - Q97YN4 Q7LXF7

GREMLIN Results:

Legend: The darker and larger the blue dots, the higher coevolution strength.

Residue pairs sorted by coevolution strength:

i	j	Sco	Prob
118_R	122_L	4.515	1.00
34_D	58_R	3.647	1.00
9_V	41_T	3.530	1.00
12_N	85_L	3.430	1.00
13_A	40_S	3.051	1.00
72_K	126_S	2.858	1.00
7_A	23_V	2.660	1.00
17_E	47_E	2.643	1.00
69_Y	73_H	2.626	1.00
42_W	58_R	2.607	1.00
137_E	141_R	2.559	1.00
17_E	21_K	2.501	1.00
21_K	48_L	2.476	1.00
32_I	45_L	2.472	1.00
81_T	93_F	2.338	1.00
46_L	58_R	2.337	1.00
57_Y	73_H	2.320	1.00
59_L	65_K	2.283	1.00
59_L	69_Y	2.252	1.00
18_E	156_L	2.189	1.00
57_Y	69_Y	2.115	1.00
3_Y	115_V	2.105	1.00
61_S	65_K	2.102	1.00
40_S	43_E	2.091	1.00
3_Y	93_F	2.078	1.00
42_W	56_L	2.056	1.00
9_V	32_I	2.032	1.00
3_Y	97_L	2.028	1.00
94_H	98_E	1.981	1.00
89_Y	92_S	1.979	1.00
95_K	150_A	1.978	1.00
7_A	30_I	1.971	1.00
11_N	38_T	1.952	1.00
18_E	88_R	1.948	1.00
33_T	70_S	1.920	1.00
67_R	84_D	1.918	1.00
6_Y	70_S	1.892	1.00
59_L	62_T	1.872	1.00
42_W	46_L	1.863	1.00
121_I	138_I	1.858	1.00
29_T	55_V	1.825	1.00
20_V	48_L	1.786	1.00
29_T	76_E	1.785	1.00
30_I	54_L	1.784	1.00
4_C	29_T	1.774	1.00
7_A	19_S	1.766	1.00
74_C	118_R	1.750	1.00
92_S	96_I	1.749	1.00
119_E	123_E	1.718	1.00
23_V	83_F	1.706	1.00
34_D	42_W	1.699	1.00
4_C	76_E	1.684	1.00
67_R	82_Y	1.660	1.00
36_Y	62_T	1.657	1.00
59_L	66_G	1.648	1.00
81_T	92_S	1.631	1.00
83_F	89_Y	1.605	1.00
149_P	153_H	1.588	1.00
28_V	93_F	1.561	1.00
36_Y	59_L	1.538	1.00
120_T	142_V	1.529	1.00
71_L	80_T	1.529	1.00
45_L	56_L	1.484	1.00
79_I	100_A	1.480	1.00
71_L	74_C	1.454	1.00
19_S	83_F	1.408	1.00
138_I	142_V	1.402	1.00
81_T	89_Y	1.400	1.00
96_I	115_V	1.395	1.00
11_N	37_S	1.395	1.00
46_L	56_L	1.392	1.00
128_R	137_E	1.391	1.00
69_Y	72_K	1.388	1.00
55_V	73_H	1.361	1.00
17_E	48_L	1.360	1.00
20_V	32_I	1.331	1.00
13_A	44_R	1.324	1.00
34_D	37_S	1.324	1.00
81_T	115_V	1.322	1.00
116_V	139_V	1.320	1.00
20_V	24_W	1.312	1.00
67_R	134_E	1.311	1.00
90_N	154_A	1.296	1.00
153_H	157_R	1.289	1.00
55_V	75_P	1.265	1.00
77_N	117_K	1.261	1.00
16_L	45_L	1.259	1.00
120_T	146_Y	1.258	1.00
20_V	30_I	1.245	1.00
9_V	45_L	1.243	1.00
9_V	12_N	1.237	1.00
46_L	49_R	1.234	1.00
16_L	41_T	1.203	1.00
24_W	48_L	1.203	1.00
74_C	80_T	1.198	1.00
153_H	156_L	1.188	1.00
100_A	115_V	1.178	1.00
44_R	48_L	1.174	1.00
96_I	100_A	1.170	1.00
33_T	66_G	1.167	1.00
80_T	118_R	1.163	1.00
24_W	54_L	1.160	1.00
9_V	16_L	1.154	1.00
130_L	133_A	1.150	1.00
42_W	45_L	1.143	1.00
43_E	46_L	1.130	1.00
142_V	146_Y	1.130	1.00
49_R	54_L	1.105	1.00
49_R	56_L	1.100	1.00
147_F	153_H	1.100	1.00
64_G	68_G	1.095	1.00
47_E	51_D	1.077	1.00
12_N	15_T	1.077	1.00
38_T	41_T	1.075	1.00
149_P	157_R	1.074	1.00
68_G	127_W	1.069	1.00
17_E	44_R	1.066	1.00
65_K	129_D	1.063	1.00
29_T	74_C	1.055	1.00
19_S	88_R	1.054	1.00
32_I	41_T	1.051	1.00
160_L	163_E	1.044	1.00
63_R	134_E	1.044	1.00
29_T	75_P	1.043	1.00
35_N	59_L	1.040	1.00
24_W	52_Y	1.039	1.00
27_D	97_L	1.029	1.00
82_Y	127_W	1.020	1.00
19_S	22_S	1.015	1.00
149_P	156_L	1.014	1.00
148_V	155_E	0.996	0.99
7_A	83_F	0.995	0.99
71_L	126_S	0.995	0.99
149_P	155_E	0.982	0.99
162_R	165_R	0.980	0.99
8_T	67_R	0.973	0.99
23_V	89_Y	0.972	0.99
49_R	52_Y	0.963	0.99
63_R	66_G	0.960	0.99
109_N	112_N	0.952	0.99
23_V	30_I	0.944	0.99
5_I	93_F	0.944	0.99
5_I	28_V	0.925	0.99
21_K	25_R	0.924	0.99
8_T	85_L	0.923	0.99
19_S	89_Y	0.922	0.99
80_T	121_I	0.922	0.99
150_A	153_H	0.918	0.99
35_N	66_G	0.918	0.99
97_L	100_A	0.916	0.99
155_E	158_N	0.913	0.99
71_L	82_Y	0.912	0.99
82_Y	134_E	0.912	0.99
10_F	35_N	0.912	0.99
28_V	53_N	0.907	0.99
3_Y	96_I	0.906	0.99
89_Y	93_F	0.903	0.99
8_T	35_N	0.900	0.99
9_V	34_D	0.891	0.99
65_K	69_Y	0.884	0.99
124_K	142_V	0.883	0.99
148_V	153_H	0.871	0.99
71_L	121_I	0.865	0.99
95_K	152_I	0.854	0.98
4_C	74_C	0.853	0.98
23_V	32_I	0.851	0.98
133_A	136_W	0.847	0.98
9_V	85_L	0.845	0.98
119_E	122_L	0.842	0.98
81_T	96_I	0.840	0.98
152_I	156_L	0.837	0.98
16_L	44_R	0.837	0.98
61_S	66_G	0.834	0.98
35_N	62_T	0.831	0.98
68_G	71_L	0.829	0.98
42_W	49_R	0.828	0.98
161_A	164_K	0.826	0.98
33_T	69_Y	0.826	0.98
21_K	51_D	0.817	0.98
116_V	142_V	0.815	0.98
11_N	41_T	0.814	0.98
4_C	31_V	0.813	0.98
3_Y	81_T	0.811	0.98
24_W	30_I	0.808	0.98
166_Y	169_G	0.808	0.98
20_V	54_L	0.806	0.98
20_V	44_R	0.806	0.98
48_L	51_D	0.803	0.98
147_F	150_A	0.800	0.98
59_L	63_R	0.797	0.98
8_T	66_G	0.796	0.97
64_G	134_E	0.796	0.97
128_R	138_I	0.794	0.97
3_Y	100_A	0.794	0.97
147_F	151_L	0.787	0.97
37_S	41_T	0.781	0.97
5_I	23_V	0.781	0.97
79_I	117_K	0.779	0.97
6_Y	82_Y	0.777	0.97
147_F	155_E	0.776	0.97
99_W	148_V	0.771	0.97
45_L	49_R	0.771	0.97
150_A	156_L	0.768	0.97
13_A	16_L	0.763	0.97
114_F	139_V	0.760	0.97
3_Y	28_V	0.759	0.97
12_N	19_S	0.759	0.97
154_A	157_R	0.754	0.97
148_V	152_I	0.748	0.96
10_F	62_T	0.736	0.96
107_L	112_N	0.731	0.96
77_N	119_E	0.728	0.96
123_E	145_D	0.726	0.96
82_Y	121_I	0.719	0.95
13_A	39_D	0.719	0.95
66_G	69_Y	0.719	0.95
8_T	70_S	0.713	0.95
148_V	151_L	0.713	0.95
163_E	167_A	0.713	0.95
31_V	73_H	0.711	0.95
47_E	50_K	0.710	0.95
177_F	181_L	0.708	0.95
68_G	138_I	0.708	0.95
31_V	55_V	0.703	0.95
79_I	115_V	0.698	0.95
84_D	134_E	0.698	0.95
176_R	180_K	0.697	0.95
121_I	142_V	0.696	0.95
63_R	133_A	0.694	0.94
35_N	87_M	0.694	0.94
159_E	162_R	0.692	0.94
27_D	53_N	0.691	0.94
67_R	127_W	0.688	0.94
104_K	107_L	0.687	0.94
45_L	58_R	0.681	0.94
25_R	91_E	0.680	0.94
122_L	126_S	0.680	0.94
6_Y	33_T	0.680	0.94
83_F	92_S	0.678	0.94
63_R	111_V	0.669	0.93
41_T	44_R	0.668	0.93
147_F	158_N	0.664	0.93
95_K	99_W	0.657	0.93
32_I	54_L	0.655	0.93
41_T	85_L	0.651	0.92
169_G	172_Y	0.648	0.92
116_V	121_I	0.648	0.92
120_T	145_D	0.647	0.92
165_R	168_K	0.646	0.92
137_E	140_S	0.644	0.92
88_R	154_A	0.643	0.92
161_A	167_A	0.637	0.92
16_L	32_I	0.637	0.92
159_E	165_R	0.634	0.91
150_A	154_A	0.633	0.91
13_A	43_E	0.631	0.91
95_K	98_E	0.631	0.91
154_A	158_N	0.631	0.91
117_K	120_T	0.631	0.91
64_G	67_R	0.630	0.91
68_G	126_S	0.628	0.91
37_S	42_W	0.627	0.91
24_W	53_N	0.625	0.91
7_A	85_L	0.625	0.91
84_D	87_M	0.623	0.91
107_L	110_L	0.623	0.91
109_N	136_W	0.621	0.91
153_H	158_N	0.620	0.90
40_S	44_R	0.620	0.90
118_R	121_I	0.619	0.90
71_L	138_I	0.619	0.90
43_E	47_E	0.619	0.90
6_Y	74_C	0.618	0.90
128_R	141_R	0.616	0.90
256_F	261_Y	0.616	0.90
10_F	38_T	0.613	0.90
177_F	180_K	0.611	0.90
19_S	23_V	0.610	0.90
92_S	113_G	0.610	0.90
26_S	53_N	0.609	0.90
79_I	97_L	0.606	0.89
81_T	113_G	0.606	0.89
23_V	28_V	0.601	0.89
15_T	156_L	0.600	0.89
148_V	156_L	0.600	0.89
254_K	259_G	0.600	0.89
12_N	41_T	0.599	0.89
66_G	70_S	0.599	0.89
13_A	41_T	0.597	0.89
126_S	141_R	0.597	0.89
175_R	179_N	0.596	0.89
149_P	152_I	0.593	0.88
24_W	28_V	0.592	0.88
63_R	67_R	0.591	0.88
93_F	115_V	0.589	0.88
3_Y	26_S	0.588	0.88
61_S	64_G	0.588	0.88
62_T	66_G	0.587	0.88
163_E	166_Y	0.586	0.88
64_G	80_T	0.585	0.88
79_I	87_M	0.585	0.88
139_V	143_G	0.583	0.88
7_A	82_Y	0.582	0.88
33_T	84_D	0.581	0.87
130_L	140_S	0.580	0.87
21_K	24_W	0.578	0.87
15_T	158_N	0.577	0.87
68_G	125_G	0.574	0.87
178_K	182_D	0.572	0.87
41_T	45_L	0.569	0.86
180_K	187_L	0.569	0.86
137_E	146_Y	0.567	0.86
129_D	133_A	0.565	0.86
28_V	75_P	0.564	0.86
67_R	112_N	0.561	0.86
160_L	165_R	0.561	0.86
6_Y	67_R	0.560	0.85
236_I	239_A	0.560	0.85
7_A	32_I	0.560	0.85
162_R	166_Y	0.559	0.85
45_L	54_L	0.559	0.85
35_N	84_D	0.557	0.85
183_V	187_L	0.557	0.85
63_R	130_L	0.556	0.85
120_T	124_K	0.556	0.85
31_V	74_C	0.555	0.85
138_I	141_R	0.553	0.85
5_I	81_T	0.553	0.85
19_S	85_L	0.551	0.85
83_F	153_H	0.549	0.84
172_Y	176_R	0.549	0.84
18_E	160_L	0.548	0.84
70_S	74_C	0.547	0.84
64_G	130_L	0.546	0.84
147_F	157_R	0.544	0.84
3_Y	27_D	0.544	0.84
108_V	111_V	0.544	0.84
31_V	76_E	0.543	0.84
89_Y	96_I	0.543	0.84
87_M	143_G	0.543	0.84
15_T	19_S	0.543	0.84
159_E	167_A	0.541	0.83
36_Y	66_G	0.541	0.83
10_F	59_L	0.540	0.83
222_I	226_Y	0.540	0.83
103_D	106_I	0.540	0.83
159_E	166_Y	0.539	0.83
12_N	84_D	0.536	0.83
165_R	169_G	0.536	0.83
12_N	63_R	0.535	0.83
26_S	52_Y	0.535	0.83
27_D	93_F	0.535	0.83
259_G	262_W	0.534	0.83
183_V	186_G	0.534	0.83
151_L	154_A	0.532	0.82
64_G	127_W	0.532	0.82
206_K	211_A	0.531	0.82
76_E	79_I	0.531	0.82
206_K	209_V	0.530	0.82
8_T	134_E	0.528	0.82
212_P	229_Y	0.527	0.82
111_V	134_E	0.524	0.82
166_Y	170_L	0.524	0.82
121_I	126_S	0.522	0.81
8_T	84_D	0.522	0.81
67_R	138_I	0.522	0.81
36_Y	58_R	0.521	0.81
61_S	69_Y	0.517	0.81
143_G	146_Y	0.517	0.81
8_T	19_S	0.516	0.81
221_G	224_R	0.511	0.80
92_S	114_F	0.511	0.80
113_G	139_V	0.511	0.80
24_W	91_E	0.508	0.80
174_G	178_K	0.507	0.79
67_R	85_L	0.507	0.79
180_K	183_V	0.506	0.79
176_R	179_N	0.506	0.79
149_P	154_A	0.506	0.79
36_Y	65_K	0.505	0.79
252_N	255_Y	0.505	0.79
5_I	83_F	0.505	0.79
9_V	67_R	0.504	0.79
48_L	54_L	0.502	0.79
197_A	200_Q	0.501	0.79
97_L	115_V	0.501	0.79
36_Y	64_G	0.500	0.78
184_I	188_G	0.500	0.78

Legend: The i and j are positions as given in the UniProt sequence. Only predictions with Prob ≥ 0.7 are listed. For all 3L/2 predictions, click on one of the links below.

Sco = ((raw_sco - min_sco)/(avg_sco - min_sco))/2 + 0.5
Prob = P(contact | Sco, seq80/√len)
seq80 = effective number of sequences, after reducing redundancy to 80% identity

Text file of predictions (all 3L/2 predictions)
Generate restraints for ROSETTA Structure Modeling
Upload PDB model overlay contacts on the model

HHsearch Results:

Legend: GREMLIN results (Prob ≥ 0.7) overlaid on top PDB hits. The grey/red filled circles underneath are pdb residue contacts (min distance < 5 Angstroms). The shade of the circles is based on the top 10 (or top 20 if e-value < 1E-20) HHsearch results which uses the overall probability and per-site alignment prob. Inter oligomeric contacts in the pdb are in shades of red.

PDB	Chains	Cov	%	HHΔ
3bcvA	2	0.4568	100	0.49	Contact Map
3l7iA	4	0.1636	100	0.507	Contact Map
1qg8A	1	0.5617	100	0.511	Contact Map
2z86A	2	0.642	100	0.529	Contact Map
2d7iA	1	0.8056	100	0.565	Contact Map
3ckjA	2	0.6728	99.9	0.58	Contact Map
1xhbA	1	0.8765	99.9	0.586	Contact Map
2nxvA	4	0.5586	99.9	0.591	Contact Map
5ajoA	1	0.7901	99.9	0.592	Contact Map
3f1yA	2	0.7068	99.9	0.593	Contact Map

Sequence Conservation (Image Generated using WebLogo v3)

Legend: Color is used to show Hydrophobicity (Blue: Hydrophilic, Green: Neutral and Black: Hydrophobic). Amount of gaps is represented by width.

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