Q97YM8 - SULSO - GREMLIN Contacts

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Q97YM8 - Uncharacterized protein

UniProt:	Q97YM8	Sequences: MKIRVDIIGLKGGVGKTTIALNTALYLSKRYKVLYIDKDLLSMGSLILGFNGLGFNKAIVEGLGNEQYEYKVNNNLTLFKLYSDPVNERELQHKVKGMGEKAERAYVDVVSKGYDVIIVDYGRIFRTNDPLVYDEYEMFKKNFPDYTIAAAGITDAIRNDVTDVVKYFLDTINRIKAKPLAFVINMVPQIGDIQKEINQIVREISEVVKCDILTIPFNEKLVQYANMGEVEEMQKVGKLIERILSNG	Download Alignment We filter this alignment to remove sites that have many gaps before running GREMLIN. Date: 2015_01
Length:	247 (212)
Sequences:	5250 (3033)
Seq/√Len:	208.3

ECOLI - MRP MIND
BACSU - SALA SOJ MIND YLXH
HALSA - Q9HQJ7 Q9HS79 Q9HQY5 Q9HNF1 Q9HHZ7 O51969 ARSA O51991 Q9HHU2
SULSO - Q97YM8 Q97WA2 Q97VX7 Q97ZW4

GREMLIN Results:

Legend: The darker and larger the blue dots, the higher coevolution strength.

Residue pairs sorted by coevolution strength:

i	j	Sco	Prob
20_A	118_I	4.644	1.00
191_G	194_Q	4.191	1.00
193_I	196_E	3.977	1.00
31_Y	116_V	3.729	1.00
189_Q	198_N	3.690	1.00
207_V	211_D	3.575	1.00
34_L	114_Y	3.239	1.00
20_A	35_Y	2.628	1.00
77_T	112_K	2.515	1.00
21_L	48_L	2.457	1.00
3_I	147_T	2.455	1.00
78_L	83_S	2.433	1.00
207_V	220_K	2.430	1.00
27_L	118_I	2.370	1.00
45_S	82_Y	2.369	1.00
217_F	220_K	2.335	1.00
27_L	116_V	2.173	1.00
48_L	78_L	2.170	1.00
199_Q	203_E	2.089	1.00
188_P	197_I	2.039	1.00
98_M	130_P	2.018	1.00
154_T	206_E	2.007	1.00
190_I	197_I	1.964	1.00
34_L	117_I	1.960	1.00
208_V	212_I	1.949	1.00
21_L	44_G	1.917	1.00
41_L	128_N	1.909	1.00
50_F	78_L	1.846	1.00
226_N	229_E	1.837	1.00
21_L	47_I	1.821	1.00
165_V	212_I	1.799	1.00
169_L	173_N	1.777	1.00
62_G	66_E	1.748	1.00
208_V	211_D	1.732	1.00
152_G	164_V	1.710	1.00
17_T	47_I	1.710	1.00
152_G	168_F	1.693	1.00
47_I	159_N	1.687	1.00
19_I	153_I	1.635	1.00
7_I	118_I	1.612	1.00
46_L	162_T	1.569	1.00
194_Q	198_N	1.568	1.00
18_T	227_M	1.553	1.00
43_M	163_D	1.487	1.00
63_L	66_E	1.482	1.00
104_R	108_D	1.472	1.00
62_G	67_Q	1.462	1.00
32_K	113_G	1.416	1.00
189_Q	192_D	1.412	1.00
90_E	169_L	1.407	1.00
209_K	212_I	1.406	1.00
26_Y	30_R	1.393	1.00
24_A	118_I	1.390	1.00
209_K	213_L	1.389	1.00
38_K	119_V	1.383	1.00
193_I	198_N	1.370	1.00
25_L	29_K	1.369	1.00
79_F	109_V	1.363	1.00
27_L	33_V	1.353	1.00
101_K	105_A	1.351	1.00
77_T	114_Y	1.309	1.00
114_Y	117_I	1.294	1.00
19_I	183_V	1.291	1.00
72_V	75_N	1.289	1.00
207_V	217_F	1.284	1.00
8_I	121_Y	1.255	1.00
62_G	65_N	1.253	1.00
50_F	83_S	1.247	1.00
8_I	167_Y	1.246	1.00
5_V	180_L	1.245	1.00
204_I	207_V	1.236	1.00
186_M	223_Q	1.235	1.00
72_V	77_T	1.231	1.00
189_Q	200_I	1.216	1.00
154_T	160_D	1.212	1.00
81_L	84_D	1.201	1.00
99_G	133_Y	1.189	1.00
149_A	180_L	1.186	1.00
17_T	44_G	1.184	1.00
121_Y	131_L	1.181	1.00
25_L	74_N	1.171	1.00
48_L	76_L	1.155	1.00
36_I	119_V	1.151	1.00
97_G	100_E	1.144	1.00
93_H	101_K	1.140	1.00
79_F	83_S	1.136	1.00
149_A	178_K	1.129	1.00
32_K	115_D	1.129	1.00
6_D	121_Y	1.128	1.00
225_A	228_G	1.119	1.00
3_I	149_A	1.113	1.00
206_E	217_F	1.098	1.00
72_V	76_L	1.079	1.00
187_V	220_K	1.058	1.00
71_K	77_T	1.056	1.00
19_I	221_L	1.037	1.00
162_T	166_K	1.037	1.00
86_V	89_R	1.035	1.00
146_Y	149_A	1.019	1.00
92_Q	171_T	1.017	1.00
168_F	213_L	1.011	1.00
90_E	93_H	1.000	1.00
25_L	76_L	1.000	1.00
188_P	199_Q	0.998	1.00
89_R	169_L	0.992	1.00
150_A	172_I	0.986	1.00
61_E	66_E	0.977	1.00
88_E	165_V	0.970	1.00
35_Y	44_G	0.969	1.00
197_I	200_I	0.966	1.00
200_I	223_Q	0.957	1.00
3_I	31_Y	0.954	0.99
58_A	63_L	0.949	0.99
6_D	146_Y	0.944	0.99
28_S	76_L	0.931	0.99
60_V	64_G	0.927	0.99
192_D	198_N	0.926	0.99
103_E	107_V	0.925	0.99
89_R	174_R	0.920	0.99
36_I	117_I	0.919	0.99
197_I	220_K	0.902	0.99
191_G	198_N	0.899	0.99
224_Y	227_M	0.892	0.99
102_A	105_A	0.892	0.99
173_N	214_T	0.889	0.99
63_L	67_Q	0.886	0.99
79_F	84_D	0.884	0.99
204_I	208_V	0.882	0.99
7_I	23_T	0.871	0.99
158_R	161_V	0.868	0.99
206_E	209_K	0.867	0.99
3_I	116_V	0.861	0.99
64_G	67_Q	0.860	0.99
199_Q	202_R	0.856	0.99
28_S	74_N	0.852	0.99
119_V	139_F	0.839	0.99
155_D	186_M	0.839	0.99
26_Y	29_K	0.838	0.99
184_I	187_V	0.834	0.99
93_H	97_G	0.834	0.99
102_A	130_P	0.829	0.99
206_E	210_C	0.826	0.99
99_G	142_N	0.824	0.99
22_N	25_L	0.817	0.98
20_A	44_G	0.812	0.98
90_E	94_K	0.811	0.98
94_K	98_M	0.809	0.98
192_D	196_E	0.803	0.98
23_T	151_A	0.801	0.98
97_G	101_K	0.799	0.98
22_N	26_Y	0.799	0.98
154_T	182_F	0.797	0.98
59_I	66_E	0.796	0.98
165_V	213_L	0.795	0.98
25_L	48_L	0.790	0.98
46_L	51_N	0.785	0.98
210_C	217_F	0.785	0.98
100_E	103_E	0.784	0.98
168_F	179_P	0.783	0.98
19_I	23_T	0.783	0.98
8_I	172_I	0.779	0.98
44_G	78_L	0.776	0.98
103_E	142_N	0.768	0.98
205_S	208_V	0.763	0.98
100_E	105_A	0.754	0.97
162_T	169_L	0.753	0.97
182_F	215_I	0.752	0.97
60_V	63_L	0.752	0.97
17_T	43_M	0.751	0.97
129_D	132_V	0.748	0.97
5_V	116_V	0.746	0.97
196_E	199_Q	0.746	0.97
225_A	229_E	0.746	0.97
4_R	119_V	0.743	0.97
140_K	177_A	0.741	0.97
58_A	61_E	0.741	0.97
5_V	151_A	0.734	0.97
12_G	15_G	0.733	0.97
95_V	129_D	0.730	0.97
169_L	213_L	0.730	0.97
46_L	158_R	0.729	0.97
204_I	217_F	0.726	0.97
91_L	94_K	0.717	0.96
60_V	67_Q	0.712	0.96
207_V	210_C	0.711	0.96
158_R	162_T	0.708	0.96
218_N	222_V	0.707	0.96
10_L	167_Y	0.703	0.96
72_V	78_L	0.699	0.96
155_D	163_D	0.699	0.96
69_E	72_V	0.690	0.96
59_I	79_F	0.688	0.96
133_Y	141_K	0.687	0.95
99_G	103_E	0.681	0.95
149_A	181_A	0.681	0.95
73_N	77_T	0.680	0.95
121_Y	160_D	0.679	0.95
139_F	142_N	0.678	0.95
188_P	220_K	0.677	0.95
121_Y	167_Y	0.674	0.95
94_K	97_G	0.673	0.95
128_N	131_L	0.672	0.95
140_K	175_I	0.670	0.95
18_T	47_I	0.668	0.95
191_G	195_K	0.658	0.94
197_I	201_V	0.655	0.94
60_V	66_E	0.655	0.94
92_Q	132_V	0.649	0.94
4_R	147_T	0.646	0.94
90_E	95_V	0.645	0.94
210_C	216_P	0.643	0.94
12_G	16_K	0.640	0.93
190_I	194_Q	0.640	0.93
24_A	76_L	0.640	0.93
119_V	143_F	0.638	0.93
200_I	204_I	0.638	0.93
6_D	177_A	0.638	0.93
51_N	87_N	0.637	0.93
131_L	139_F	0.636	0.93
98_M	105_A	0.635	0.93
82_Y	86_V	0.632	0.93
198_N	202_R	0.632	0.93
67_Q	110_V	0.631	0.93
203_E	220_K	0.628	0.93
201_V	204_I	0.625	0.93
169_L	174_R	0.623	0.93
61_E	65_N	0.622	0.92
94_K	129_D	0.620	0.92
221_L	227_M	0.615	0.92
92_Q	105_A	0.615	0.92
31_Y	115_D	0.614	0.92
71_K	75_N	0.613	0.92
13_G	16_K	0.611	0.92
28_S	75_N	0.608	0.92
41_L	98_M	0.607	0.92
158_R	165_V	0.607	0.92
182_F	209_K	0.604	0.91
18_T	163_D	0.603	0.91
25_L	28_S	0.602	0.91
76_L	80_K	0.601	0.91
205_S	210_C	0.600	0.91
98_M	171_T	0.597	0.91
8_I	150_A	0.595	0.91
43_M	157_I	0.590	0.90
151_A	218_N	0.590	0.90
94_K	105_A	0.585	0.90
94_K	103_E	0.583	0.90
99_G	131_L	0.583	0.90
173_N	178_K	0.582	0.90
33_V	38_K	0.581	0.90
22_N	41_L	0.574	0.89
8_I	152_G	0.573	0.89
46_L	87_N	0.570	0.89
124_I	163_D	0.570	0.89
49_G	73_N	0.569	0.89
131_L	167_Y	0.566	0.88
22_N	163_D	0.565	0.88
181_A	216_P	0.560	0.88
98_M	101_K	0.559	0.88
74_N	77_T	0.557	0.88
93_H	108_D	0.556	0.88
42_S	125_F	0.556	0.88
91_L	98_M	0.555	0.88
184_I	220_K	0.554	0.87
43_M	159_N	0.553	0.87
150_A	163_D	0.553	0.87
160_D	163_D	0.552	0.87
106_Y	143_F	0.552	0.87
38_K	102_A	0.548	0.87
144_P	147_T	0.547	0.87
184_I	204_I	0.545	0.87
156_A	187_V	0.544	0.86
88_E	209_K	0.544	0.86
28_S	33_V	0.541	0.86
59_I	67_Q	0.536	0.86
33_V	116_V	0.534	0.85
218_N	227_M	0.534	0.85
206_E	216_P	0.533	0.85
59_I	62_G	0.532	0.85
105_A	109_V	0.532	0.85
199_Q	220_K	0.529	0.85
198_N	225_A	0.527	0.85
38_K	139_F	0.527	0.85
191_G	196_E	0.527	0.85
8_I	23_T	0.524	0.84
60_V	65_N	0.524	0.84
23_T	27_L	0.524	0.84
150_A	177_A	0.523	0.84
155_D	160_D	0.523	0.84
97_G	104_R	0.523	0.84
32_K	214_T	0.522	0.84
41_L	130_P	0.522	0.84
96_K	105_A	0.522	0.84
187_V	204_I	0.522	0.84
163_D	172_I	0.520	0.84
28_S	73_N	0.520	0.84
154_T	209_K	0.520	0.84
103_E	109_V	0.519	0.84
95_V	98_M	0.519	0.84
42_S	123_R	0.516	0.83
66_E	110_V	0.516	0.83
203_E	229_E	0.515	0.83
33_V	118_I	0.514	0.83
224_Y	229_E	0.513	0.83
32_K	112_K	0.513	0.83
10_L	164_V	0.510	0.83
43_M	130_P	0.509	0.83
98_M	102_A	0.509	0.83
21_L	78_L	0.506	0.82
4_R	106_Y	0.506	0.82
197_I	203_E	0.505	0.82
6_D	119_V	0.505	0.82
92_Q	95_V	0.505	0.82
37_D	42_S	0.505	0.82
11_K	16_K	0.504	0.82
110_V	113_G	0.501	0.82
158_R	166_K	0.501	0.82
11_K	15_G	0.500	0.82

Legend: The i and j are positions as given in the UniProt sequence. Only predictions with Prob ≥ 0.7 are listed. For all 3L/2 predictions, click on one of the links below.

Sco = ((raw_sco - min_sco)/(avg_sco - min_sco))/2 + 0.5
Prob = P(contact | Sco, seq80/√len)
seq80 = effective number of sequences, after reducing redundancy to 80% identity

Text file of predictions (all 3L/2 predictions)
Generate restraints for ROSETTA Structure Modeling
Upload PDB model overlay contacts on the model

HHsearch Results:

Legend: GREMLIN results (Prob ≥ 0.7) overlaid on top PDB hits. The grey/red filled circles underneath are pdb residue contacts (min distance < 5 Angstroms). The shade of the circles is based on the top 10 (or top 20 if e-value < 1E-20) HHsearch results which uses the overall probability and per-site alignment prob. Inter oligomeric contacts in the pdb are in shades of red.

PDB	Chains	Cov	%	HHΔ
2wojA	2	0.9271	100	0.445	Contact Map
3io3A	2	0.7611	100	0.445	Contact Map
3iqwA	2	0.8704	100	0.448	Contact Map
2wooA	5	0.9636	100	0.46	Contact Map
3ug7A	4	0.9595	100	0.494	Contact Map
3zq6A	2	0.9312	100	0.494	Contact Map
3igfA	2	0.8745	100	0.504	Contact Map
2ph1A	2	0.9312	100	0.506	Contact Map
1ihuA	3	0.8704	100	0.507	Contact Map
5aunB	2	0.8543	100	0.521	Contact Map

Sequence Conservation (Image Generated using WebLogo v3)

Legend: Color is used to show Hydrophobicity (Blue: Hydrophilic, Green: Neutral and Black: Hydrophobic). Amount of gaps is represented by width.

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