Q97YL7 - SULSO - GREMLIN Contacts

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Q97YL7 - Uncharacterized protein

UniProt:	Q97YL7	Sequences: MSLFNLSLVTFEIDHEDCWSKLTSSFPVQVKTIFAKPSKGKDYILGMDEVKTYNRRVFKDFLKSFKKEKSIYEIIQILELDSRRGIYRILFKERYENMIMSIIENYMTLYIKDLIKEGNERLLLIMPSSDVTMLKRDLESIGKIHYFNAKLVNFNDFVPTFFDFSEQERNAVLHAIRLGYYEYPRRINLEELGKIMGISKPTLEEYLRKAEKKIMSKIFREFYQQDLLFHSPDY	Download Alignment We filter this alignment to remove sites that have many gaps before running GREMLIN. Date: 2015_01
Length:	234 (205)
Sequences:	1834 (1470)
Seq/√Len:	102.7

HALSA - Q9HR58 Q9HSM9 Q9HSR5 O54637 Q9HQD9 Q9HPS7 DMSR Q9HQU9
SULSO - Q97YL7 Q97YT8 Q97WR0 Q97Y14 Q97UD7 Q7LXI8 Q97X87 Q97ZB6 Q97UC0 Q97ZX5

GREMLIN Results:

Legend: The darker and larger the blue dots, the higher coevolution strength.

Residue pairs sorted by coevolution strength:

i	j	Sco	Prob
181_Y	211_E	4.546	1.00
187_I	192_L	4.237	1.00
174_H	178_L	3.787	1.00
202_T	206_Y	3.286	1.00
103_I	108_T	3.279	1.00
171_A	196_M	3.273	1.00
108_T	126_M	3.146	1.00
199_S	202_T	3.073	1.00
178_L	195_I	3.025	1.00
174_H	192_L	2.978	1.00
178_L	192_L	2.978	1.00
188_N	191_E	2.762	1.00
167_Q	206_Y	2.721	1.00
182_E	186_R	2.714	1.00
187_I	191_E	2.707	1.00
176_I	216_S	2.691	1.00
24_S	118_G	2.485	1.00
48_D	89_I	2.475	1.00
167_Q	170_N	2.425	1.00
12_E	119_N	2.371	1.00
189_L	203_L	2.233	1.00
167_Q	171_A	2.229	1.00
23_T	68_E	2.200	1.00
183_Y	204_E	2.196	1.00
50_V	61_F	2.173	1.00
127_P	130_D	1.953	1.00
111_I	125_I	1.949	1.00
169_R	173_L	1.940	1.00
62_L	87_Y	1.916	1.00
189_L	204_E	1.822	1.00
172_V	215_M	1.810	1.00
198_I	203_L	1.809	1.00
206_Y	209_K	1.800	1.00
200_K	204_E	1.773	1.00
185_R	208_R	1.694	1.00
57_V	60_D	1.668	1.00
194_K	197_G	1.664	1.00
34_F	37_P	1.660	1.00
192_L	203_L	1.654	1.00
12_E	145_H	1.582	1.00
172_V	181_Y	1.578	1.00
178_L	187_I	1.549	1.00
9_V	131_V	1.485	1.00
171_A	206_Y	1.482	1.00
46_G	91_F	1.423	1.00
171_A	198_I	1.393	1.00
187_I	195_I	1.367	0.99
179_G	186_R	1.323	0.99
215_M	218_I	1.322	0.99
35_A	49_E	1.310	0.99
189_L	206_Y	1.303	0.99
171_A	192_L	1.300	0.99
206_Y	213_K	1.298	0.99
12_E	147_F	1.292	0.99
205_E	209_K	1.287	0.99
76_Q	87_Y	1.275	0.99
176_I	219_F	1.261	0.99
19_W	23_T	1.240	0.99
183_Y	205_E	1.212	0.99
75_I	187_I	1.212	0.99
202_T	207_L	1.209	0.99
202_T	205_E	1.203	0.99
133_M	136_R	1.187	0.99
201_P	205_E	1.187	0.99
212_K	216_S	1.176	0.98
11_F	124_L	1.169	0.98
58_F	62_L	1.168	0.98
58_F	85_G	1.157	0.98
191_E	194_K	1.156	0.98
193_G	203_L	1.154	0.98
171_A	210_A	1.152	0.98
59_K	221_E	1.149	0.98
161_F	218_I	1.142	0.98
171_A	203_L	1.141	0.98
190_E	200_K	1.136	0.98
180_Y	185_R	1.135	0.98
77_I	115_I	1.114	0.98
67_K	82_S	1.109	0.98
62_L	74_I	1.106	0.98
153_N	157_F	1.105	0.98
181_Y	207_L	1.093	0.98
176_I	181_Y	1.091	0.97
196_M	203_L	1.090	0.97
52_T	56_R	1.089	0.97
183_Y	206_Y	1.070	0.97
183_Y	201_P	1.058	0.97
58_F	61_F	1.036	0.97
121_R	147_F	1.035	0.97
71_I	74_I	1.034	0.97
164_F	210_A	1.028	0.96
76_Q	85_G	1.025	0.96
214_I	218_I	1.018	0.96
183_Y	212_K	1.010	0.96
51_K	84_R	0.993	0.96
34_F	48_D	0.990	0.96
113_D	181_Y	0.987	0.95
142_G	202_T	0.967	0.95
125_I	181_Y	0.966	0.95
180_Y	189_L	0.963	0.95
183_Y	190_E	0.961	0.95
108_T	112_K	0.953	0.95
199_S	208_R	0.951	0.94
207_L	211_E	0.950	0.94
126_M	145_H	0.942	0.94
149_A	180_Y	0.936	0.94
215_M	219_F	0.921	0.93
135_K	144_I	0.920	0.93
65_F	209_K	0.918	0.93
181_Y	189_L	0.916	0.93
189_L	200_K	0.912	0.93
131_V	170_N	0.911	0.93
107_M	127_P	0.909	0.93
60_D	63_K	0.905	0.93
85_G	88_R	0.903	0.93
62_L	79_E	0.901	0.93
11_F	135_K	0.901	0.93
110_Y	124_L	0.898	0.93
181_Y	210_A	0.896	0.92
163_D	217_K	0.889	0.92
17_D	198_I	0.870	0.91
132_T	135_K	0.863	0.91
101_S	105_N	0.861	0.91
173_L	177_R	0.859	0.91
102_I	188_N	0.856	0.91
133_M	186_R	0.851	0.90
92_K	146_Y	0.850	0.90
202_T	210_A	0.849	0.90
192_L	196_M	0.847	0.90
60_D	64_S	0.843	0.90
135_K	202_T	0.842	0.90
21_K	71_I	0.838	0.90
136_R	140_S	0.837	0.90
183_Y	208_R	0.836	0.90
68_E	210_A	0.828	0.89
145_H	153_N	0.827	0.89
84_R	166_E	0.821	0.89
45_L	119_N	0.821	0.89
146_Y	149_A	0.813	0.88
198_I	201_P	0.809	0.88
190_E	208_R	0.801	0.88
170_N	173_L	0.789	0.87
106_Y	137_D	0.785	0.86
174_H	196_M	0.782	0.86
67_K	157_F	0.782	0.86
49_E	135_K	0.780	0.86
30_V	44_I	0.777	0.86
189_L	202_T	0.776	0.86
18_C	120_E	0.774	0.86
22_L	70_S	0.766	0.85
200_K	209_K	0.762	0.85
167_Q	205_E	0.762	0.85
32_T	50_V	0.758	0.85
19_W	22_L	0.757	0.84
50_V	85_G	0.755	0.84
88_R	144_I	0.751	0.84
182_E	212_K	0.751	0.84
34_F	47_M	0.746	0.84
9_V	12_E	0.741	0.83
210_A	215_M	0.740	0.83
129_S	177_R	0.738	0.83
173_L	219_F	0.737	0.83
209_K	212_K	0.728	0.82
32_T	209_K	0.728	0.82
134_L	200_K	0.727	0.82
115_I	120_E	0.726	0.82
167_Q	211_E	0.721	0.81
52_T	130_D	0.720	0.81
189_L	210_A	0.720	0.81
138_L	142_G	0.712	0.81
33_I	36_K	0.709	0.80
110_Y	133_M	0.706	0.80
130_D	133_M	0.702	0.80
184_P	208_R	0.701	0.80
30_V	52_T	0.699	0.79
56_R	67_K	0.693	0.79
187_I	203_L	0.691	0.79
63_K	67_K	0.687	0.78
18_C	122_L	0.686	0.78
23_T	30_V	0.683	0.78
126_M	181_Y	0.682	0.78
103_I	122_L	0.681	0.78
18_C	99_I	0.681	0.78
104_E	192_L	0.678	0.77
160_T	214_I	0.675	0.77
180_Y	207_L	0.674	0.77
70_S	111_I	0.674	0.77
73_E	130_D	0.673	0.77
62_L	131_V	0.673	0.77
73_E	76_Q	0.667	0.76
100_M	126_M	0.660	0.75
112_K	181_Y	0.656	0.75
148_N	192_L	0.656	0.75
34_F	125_I	0.656	0.75
8_L	150_K	0.653	0.75
202_T	209_K	0.652	0.75
154_F	182_E	0.652	0.75
119_N	158_V	0.651	0.74
24_S	119_N	0.649	0.74
178_L	203_L	0.644	0.74
86_I	90_L	0.644	0.74
49_E	84_R	0.639	0.73
47_M	88_R	0.637	0.73
170_N	174_H	0.637	0.73
34_F	39_K	0.636	0.73
214_I	217_K	0.631	0.72
84_R	89_I	0.630	0.72
179_G	204_E	0.628	0.72
90_L	200_K	0.626	0.72
9_V	164_F	0.626	0.72
59_K	72_Y	0.622	0.71
100_M	203_L	0.622	0.71
14_D	21_K	0.618	0.71
98_M	101_S	0.618	0.71
80_L	133_M	0.616	0.70
118_G	191_E	0.616	0.70
100_M	110_Y	0.616	0.70
17_D	48_D	0.613	0.70
15_H	18_C	0.611	0.70
21_K	24_S	0.610	0.70
50_V	65_F	0.608	0.69
60_D	194_K	0.608	0.69
113_D	126_M	0.604	0.69
16_E	58_F	0.603	0.69
169_R	218_I	0.602	0.69
61_F	152_V	0.602	0.69
9_V	15_H	0.600	0.68
80_L	218_I	0.599	0.68
72_Y	92_K	0.598	0.68
162_F	218_I	0.596	0.68
190_E	194_K	0.594	0.68
14_D	118_G	0.594	0.68
114_L	121_R	0.592	0.67
37_P	98_M	0.592	0.67
174_H	195_I	0.592	0.67
28_V	32_T	0.590	0.67
79_E	101_S	0.590	0.67
29_Q	32_T	0.589	0.67
34_F	98_M	0.589	0.67
18_C	21_K	0.588	0.67
9_V	124_L	0.586	0.67
209_K	214_I	0.585	0.66
116_K	119_N	0.584	0.66
103_I	144_I	0.582	0.66
70_S	81_D	0.580	0.66
20_S	89_I	0.580	0.66
51_K	101_S	0.580	0.66
60_D	82_S	0.580	0.66
20_S	120_E	0.578	0.65
192_L	197_G	0.576	0.65
36_K	46_G	0.573	0.65
180_Y	214_I	0.571	0.65
163_D	216_S	0.570	0.64
96_E	103_I	0.568	0.64
174_H	187_I	0.567	0.64
25_S	70_S	0.566	0.64
42_D	195_I	0.566	0.64
41_K	148_N	0.565	0.64
132_T	202_T	0.561	0.63
131_V	148_N	0.560	0.63
124_L	134_L	0.560	0.63
109_L	125_I	0.558	0.63
196_M	204_E	0.557	0.63
68_E	71_I	0.557	0.63
35_A	38_S	0.556	0.63
91_F	100_M	0.556	0.63
15_H	20_S	0.555	0.62
77_I	86_I	0.554	0.62
10_T	121_R	0.552	0.62
168_E	213_K	0.545	0.61
202_T	218_I	0.544	0.61
179_G	182_E	0.544	0.61
33_I	216_S	0.543	0.61
160_T	209_K	0.541	0.60
63_K	219_F	0.540	0.60
11_F	122_L	0.538	0.60
172_V	210_A	0.535	0.60
66_K	133_M	0.533	0.59
15_H	120_E	0.530	0.59
91_F	161_F	0.529	0.59
43_Y	90_L	0.529	0.59
11_F	118_G	0.527	0.58
121_R	195_I	0.527	0.58
106_Y	165_S	0.525	0.58
187_I	208_R	0.525	0.58
34_F	115_I	0.524	0.58
172_V	214_I	0.521	0.58
67_K	178_L	0.521	0.58
186_R	217_K	0.520	0.57
11_F	205_E	0.520	0.57
89_I	92_K	0.519	0.57
107_M	137_D	0.518	0.57
183_Y	202_T	0.518	0.57
78_L	131_V	0.516	0.57
169_R	217_K	0.512	0.56
151_L	154_F	0.512	0.56
176_I	215_M	0.512	0.56
45_L	147_F	0.512	0.56
170_N	203_L	0.512	0.56
32_T	154_F	0.511	0.56
63_K	101_S	0.511	0.56
35_A	181_Y	0.509	0.56
180_Y	188_N	0.509	0.56
132_T	136_R	0.506	0.55
144_I	204_E	0.505	0.55
129_S	149_A	0.503	0.55
123_L	147_F	0.502	0.55
50_V	64_S	0.502	0.55
13_I	144_I	0.500	0.55

Legend: The i and j are positions as given in the UniProt sequence. Only predictions with Prob ≥ 0.7 are listed. For all 3L/2 predictions, click on one of the links below.

Sco = ((raw_sco - min_sco)/(avg_sco - min_sco))/2 + 0.5
Prob = P(contact | Sco, seq80/√len)
seq80 = effective number of sequences, after reducing redundancy to 80% identity

Text file of predictions (all 3L/2 predictions)
Generate restraints for ROSETTA Structure Modeling
Upload PDB model overlay contacts on the model

HHsearch Results:

Legend: GREMLIN results (Prob ≥ 0.7) overlaid on top PDB hits. The grey/red filled circles underneath are pdb residue contacts (min distance < 5 Angstroms). The shade of the circles is based on the top 10 (or top 20 if e-value < 1E-20) HHsearch results which uses the overall probability and per-site alignment prob. Inter oligomeric contacts in the pdb are in shades of red.

PDB	Chains	Cov	%	HHΔ
1s7oA	3	0.3504	97.6	0.85	Contact Map
1ku3A	1	0.2607	97.4	0.854	Contact Map
2o8xA	7	0.2607	97.4	0.855	Contact Map
4wszA	2	0.2521	97.4	0.856	Contact Map
3hugA	3	0.3419	97.3	0.857	Contact Map
2lfwA	1	0.6709	97.2	0.859	Contact Map
1xsvA	2	0.3462	97.1	0.862	Contact Map
1ttyA	1	0.3376	97.1	0.862	Contact Map
1je8A	2	0.2564	97.1	0.863	Contact Map
3c57A	2	0.2009	96.9	0.866	Contact Map

Sequence Conservation (Image Generated using WebLogo v3)

Legend: Color is used to show Hydrophobicity (Blue: Hydrophilic, Green: Neutral and Black: Hydrophobic). Amount of gaps is represented by width.

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