Q97YL1 - SULSO - GREMLIN Contacts

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Q97YL1 - Ring oxydation complex/ phenylacetic acid degradation related protein

UniProt:	Q97YL1	Sequences: MCKYISMIPVEYKKPKRVIGWGDYKGLRKFESIYDLPFEAVDVLLKLLTVQGDTEFASIEQHMPWLFHAPKLSDRVTISRIMVDEMRHGWQVIQLLKEFGEEGKKIAENLLWTRMGRHKLDAFNIPFNMWEDTLGFTFLIDRVGLYQLLAFEDSSFGPLSRIIPTMLMEEEFHINFGYTGIKRLVEEGKRDLAQALINKWFPRGLDMFGHSKSYTIDLAYKYGIKRMRNDEMRQLYIKDVAELIAPLGLELPDVNRNRRIF	Download Alignment We filter this alignment to remove sites that have many gaps before running GREMLIN. Date: 2015_01
Length:	261 (211)
Sequences:	1358 (699)
Seq/√Len:	48.1

ECOLI - PAAA PAAC
SULSO - Q97YL1 Q97WU6 Q97YL0 Q97WU5

GREMLIN Results:

Legend: The darker and larger the blue dots, the higher coevolution strength.

Residue pairs sorted by coevolution strength:

i	j	Sco	Prob
104_K	107_A	4.063	1.00
194_Q	198_N	4.055	1.00
52_G	93_I	3.710	1.00
50_V	211_S	3.459	1.00
43_V	218_L	3.134	1.00
106_I	110_L	3.067	1.00
59_I	86_M	2.876	1.00
74_D	176_F	2.797	1.00
194_Q	250_E	2.759	1.00
60_E	63_M	2.563	1.00
139_L	197_I	2.554	1.00
190_R	248_G	2.509	1.00
125_I	203_R	2.493	1.00
106_I	112_W	2.459	1.00
186_E	248_G	2.389	1.00
135_G	193_A	2.336	1.00
190_R	194_Q	2.319	1.00
219_A	225_K	2.306	1.00
131_E	196_L	2.291	1.00
181_I	193_A	2.208	1.00
109_N	112_W	2.097	1.00
105_K	109_N	2.075	1.00
210_H	228_R	2.054	1.00
138_F	181_I	2.015	0.99
92_V	159_L	1.921	0.99
204_G	236_Y	1.919	0.99
95_L	158_P	1.886	0.99
106_I	109_N	1.875	0.99
92_V	148_L	1.858	0.99
97_K	103_G	1.851	0.99
142_R	174_I	1.845	0.99
129_M	192_L	1.826	0.99
241_A	251_L	1.788	0.99
105_K	112_W	1.745	0.99
103_G	109_N	1.721	0.98
103_G	106_I	1.664	0.98
106_I	111_L	1.662	0.98
148_L	170_E	1.621	0.98
135_G	197_I	1.586	0.97
95_L	156_F	1.581	0.97
185_V	193_A	1.559	0.97
129_M	132_D	1.522	0.96
210_H	230_D	1.516	0.96
103_G	110_L	1.509	0.96
134_L	181_I	1.505	0.96
233_R	237_I	1.489	0.96
141_D	144_G	1.481	0.96
103_G	112_W	1.465	0.96
79_S	86_M	1.448	0.95
69_A	130_W	1.447	0.95
194_Q	244_I	1.440	0.95
146_Y	239_D	1.421	0.95
217_D	221_K	1.421	0.95
45_L	99_F	1.416	0.95
157_G	161_R	1.395	0.94
132_D	199_K	1.378	0.94
194_Q	248_G	1.364	0.94
241_A	245_A	1.359	0.93
148_L	176_F	1.323	0.92
138_F	243_L	1.317	0.92
107_A	110_L	1.305	0.92
228_R	231_E	1.289	0.91
138_F	240_V	1.284	0.91
214_Y	219_A	1.284	0.91
104_K	110_L	1.282	0.91
46_K	118_H	1.281	0.91
135_G	181_I	1.271	0.91
103_G	107_A	1.271	0.91
191_D	195_A	1.247	0.90
106_I	116_G	1.246	0.90
50_V	213_S	1.245	0.90
138_F	177_G	1.221	0.89
178_Y	243_L	1.216	0.89
237_I	241_A	1.205	0.88
58_S	136_F	1.196	0.88
150_A	235_L	1.190	0.88
139_L	200_W	1.190	0.88
144_G	170_E	1.178	0.87
110_L	116_G	1.177	0.87
212_K	217_D	1.177	0.87
145_L	167_L	1.173	0.87
242_E	246_P	1.172	0.87
205_L	233_R	1.170	0.87
61_Q	64_P	1.155	0.86
105_K	110_L	1.151	0.86
108_E	112_W	1.136	0.85
233_R	236_Y	1.126	0.85
123_F	140_I	1.126	0.85
103_G	111_L	1.110	0.84
102_E	105_K	1.106	0.84
142_R	239_D	1.102	0.83
185_V	247_L	1.097	0.83
85_E	170_E	1.094	0.83
93_I	108_E	1.087	0.83
234_Q	237_I	1.084	0.82
91_Q	162_I	1.084	0.82
95_L	98_E	1.080	0.82
167_L	171_E	1.068	0.81
141_D	177_G	1.058	0.81
142_R	146_Y	1.055	0.81
44_L	48_L	1.035	0.79
110_L	115_M	1.034	0.79
153_D	221_K	1.032	0.79
217_D	228_R	1.007	0.77
144_G	148_L	1.003	0.77
103_G	108_E	1.002	0.77
141_D	148_L	0.997	0.77
193_A	249_L	0.992	0.76
141_D	176_F	0.982	0.76
185_V	190_R	0.972	0.75
185_V	194_Q	0.957	0.74
92_V	144_G	0.956	0.74
58_S	137_T	0.950	0.73
181_I	243_L	0.948	0.73
55_E	170_E	0.941	0.72
122_A	140_I	0.932	0.72
150_A	231_E	0.926	0.71
54_T	144_G	0.920	0.71
149_L	152_E	0.915	0.70
165_T	172_F	0.913	0.70
97_K	100_G	0.904	0.69
44_L	219_A	0.903	0.69
85_E	144_G	0.897	0.69
195_A	198_N	0.897	0.69
90_W	105_K	0.894	0.68
90_W	161_R	0.889	0.68
175_N	179_T	0.888	0.68
107_A	112_W	0.879	0.67
201_F	252_P	0.878	0.67
85_E	141_D	0.873	0.67
230_D	234_Q	0.871	0.66
112_W	116_G	0.867	0.66
193_A	248_G	0.862	0.66
198_N	244_I	0.860	0.65
251_L	254_V	0.857	0.65
125_I	199_K	0.856	0.65
84_D	196_L	0.851	0.65
195_A	199_K	0.849	0.64
174_I	239_D	0.848	0.64
102_E	106_I	0.839	0.64
109_N	113_T	0.839	0.64
237_I	251_L	0.836	0.63
135_G	196_L	0.829	0.63
54_T	219_A	0.826	0.62
145_L	171_E	0.826	0.62
145_L	149_L	0.822	0.62
81_I	176_F	0.817	0.61
236_Y	240_V	0.816	0.61
107_A	111_L	0.813	0.61
139_L	240_V	0.812	0.61
99_F	102_E	0.807	0.61
146_Y	232_M	0.802	0.60
61_Q	73_S	0.802	0.60
123_F	127_F	0.801	0.60
146_Y	235_L	0.798	0.60
178_Y	239_D	0.797	0.60
134_L	180_G	0.793	0.59
67_F	75_R	0.789	0.59
133_T	137_T	0.788	0.59
63_M	79_S	0.786	0.58
149_L	238_K	0.779	0.58
230_D	233_R	0.779	0.58
98_E	158_P	0.777	0.58
94_Q	197_I	0.774	0.57
94_Q	97_K	0.768	0.57
129_M	196_L	0.768	0.57
127_F	132_D	0.766	0.57
197_I	242_E	0.757	0.56
84_D	165_T	0.757	0.56
178_Y	182_K	0.752	0.55
180_G	183_R	0.751	0.55
127_F	133_T	0.749	0.55
97_K	101_E	0.737	0.54
188_G	201_F	0.732	0.53
87_R	169_E	0.713	0.51
130_W	184_L	0.705	0.50
103_G	116_G	0.703	0.50
49_T	101_E	0.702	0.50
80_R	83_V	0.699	0.50
65_W	128_N	0.699	0.50
50_V	214_Y	0.698	0.50
143_V	147_Q	0.697	0.50
112_W	115_M	0.692	0.49
133_T	162_I	0.692	0.49
144_G	176_F	0.690	0.49
71_K	130_W	0.689	0.49
182_K	246_P	0.687	0.49
62_H	130_W	0.683	0.48
48_L	158_P	0.679	0.48
75_R	82_M	0.678	0.48
105_K	108_E	0.675	0.47
85_E	88_H	0.672	0.47
58_S	123_F	0.672	0.47
156_F	166_M	0.671	0.47
176_F	180_G	0.667	0.47
46_K	213_S	0.666	0.46
162_I	166_M	0.664	0.46
45_L	48_L	0.662	0.46
132_D	255_N	0.660	0.46
218_L	221_K	0.658	0.46
92_V	141_D	0.654	0.45
231_E	234_Q	0.652	0.45
55_E	254_V	0.649	0.45
158_P	161_R	0.647	0.45
63_M	82_M	0.646	0.45
137_T	141_D	0.646	0.45
143_V	148_L	0.641	0.44
79_S	82_M	0.636	0.44
90_W	94_Q	0.636	0.44
92_V	176_F	0.634	0.43
88_H	156_F	0.634	0.43
199_K	202_P	0.631	0.43
101_E	111_L	0.630	0.43
211_S	214_Y	0.627	0.43
71_K	176_F	0.626	0.43
145_L	239_D	0.626	0.43
59_I	114_R	0.625	0.42
243_L	247_L	0.624	0.42
198_N	250_E	0.622	0.42
62_H	82_M	0.621	0.42
222_Y	253_D	0.620	0.42
234_Q	241_A	0.614	0.41
229_N	234_Q	0.613	0.41
83_V	87_R	0.612	0.41
132_D	196_L	0.609	0.41
54_T	129_M	0.608	0.41
153_D	245_A	0.606	0.41
191_D	238_K	0.605	0.40
143_V	171_E	0.604	0.40
44_L	95_L	0.602	0.40
132_D	200_W	0.601	0.40
113_T	116_G	0.599	0.40
84_D	172_F	0.598	0.40
205_L	209_G	0.598	0.40
137_T	177_G	0.596	0.40
94_Q	161_R	0.593	0.39
125_I	132_D	0.592	0.39
106_I	117_R	0.592	0.39
242_E	254_V	0.592	0.39
165_T	196_L	0.590	0.39
145_L	174_I	0.588	0.39
184_L	193_A	0.588	0.39
55_E	85_E	0.588	0.39
131_E	184_L	0.585	0.39
208_F	232_M	0.584	0.38
153_D	195_A	0.582	0.38
182_K	247_L	0.581	0.38
108_E	111_L	0.580	0.38
164_P	171_E	0.578	0.38
220_Y	228_R	0.577	0.38
48_L	95_L	0.576	0.38
57_A	126_P	0.573	0.37
75_R	79_S	0.573	0.37
69_A	85_E	0.572	0.37
174_I	178_Y	0.571	0.37
87_R	172_F	0.571	0.37
59_I	140_I	0.567	0.37
131_E	190_R	0.565	0.37
122_A	125_I	0.564	0.37
162_I	165_T	0.562	0.36
164_P	167_L	0.561	0.36
50_V	236_Y	0.561	0.36
69_A	79_S	0.560	0.36
147_Q	170_E	0.560	0.36
102_E	112_W	0.558	0.36
141_D	224_I	0.558	0.36
130_W	156_F	0.555	0.36
183_R	186_E	0.555	0.36
235_L	239_D	0.554	0.36
71_K	74_D	0.553	0.36
126_P	203_R	0.551	0.35
198_N	253_D	0.550	0.35
77_T	184_L	0.548	0.35
139_L	204_G	0.548	0.35
69_A	76_V	0.544	0.35
152_E	164_P	0.543	0.35
210_H	231_E	0.542	0.35
95_L	137_T	0.538	0.34
64_P	98_E	0.537	0.34
66_L	79_S	0.535	0.34
63_M	133_T	0.535	0.34
210_H	229_N	0.535	0.34
195_A	250_E	0.533	0.34
97_K	104_K	0.532	0.34
176_F	179_T	0.531	0.34
55_E	88_H	0.531	0.34
133_T	246_P	0.530	0.33
102_E	108_E	0.523	0.33
121_D	137_T	0.523	0.33
239_D	242_E	0.521	0.33
154_S	223_G	0.519	0.32
176_F	236_Y	0.519	0.32
71_K	76_V	0.519	0.32
59_I	147_Q	0.519	0.32
142_R	240_V	0.518	0.32
186_E	189_K	0.515	0.32
47_L	226_R	0.514	0.32
99_F	222_Y	0.513	0.32
80_R	165_T	0.510	0.32
197_I	244_I	0.509	0.32
66_L	91_Q	0.507	0.31
55_E	71_K	0.507	0.31
152_E	155_S	0.507	0.31
62_H	86_M	0.507	0.31
59_I	143_V	0.506	0.31
66_L	179_T	0.505	0.31
214_Y	217_D	0.505	0.31
74_D	192_L	0.505	0.31
224_I	231_E	0.503	0.31
49_T	96_L	0.502	0.31
75_R	136_F	0.502	0.31
104_K	111_L	0.502	0.31
109_N	115_M	0.501	0.31
46_K	50_V	0.501	0.31
242_E	250_E	0.501	0.31
243_L	246_P	0.500	0.31

Legend: The i and j are positions as given in the UniProt sequence. Only predictions with Prob ≥ 0.7 are listed. For all 3L/2 predictions, click on one of the links below.

Sco = ((raw_sco - min_sco)/(avg_sco - min_sco))/2 + 0.5
Prob = P(contact | Sco, seq80/√len)
seq80 = effective number of sequences, after reducing redundancy to 80% identity

Text file of predictions (all 3L/2 predictions)
Generate restraints for ROSETTA Structure Modeling
Upload PDB model overlay contacts on the model

HHsearch Results:

Legend: GREMLIN results (Prob ≥ 0.7) overlaid on top PDB hits. The grey/red filled circles underneath are pdb residue contacts (min distance < 5 Angstroms). The shade of the circles is based on the top 10 (or top 20 if e-value < 1E-20) HHsearch results which uses the overall probability and per-site alignment prob. Inter oligomeric contacts in the pdb are in shades of red.

PDB	Chains	Cov	%	HHΔ
3pf7A	1	0.9885	100	0.186	Contact Map
1otkA	2	0.8314	100	0.245	Contact Map
3pvtA	1	0.9502	100	0.289	Contact Map
4mudA	2	0.8467	100	0.358	Contact Map
3ge3A	2	0.977	98.7	0.864	Contact Map
2incA	2	0.977	98.7	0.866	Contact Map
1mtyB	2	0.9732	98.4	0.877	Contact Map
3ez0A	2	0.8008	98.3	0.881	Contact Map
1mtyD	2	0.9732	98.1	0.887	Contact Map
1mhyB	2	0.977	98	0.889	Contact Map

Sequence Conservation (Image Generated using WebLogo v3)

Legend: Color is used to show Hydrophobicity (Blue: Hydrophilic, Green: Neutral and Black: Hydrophobic). Amount of gaps is represented by width.

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