Q97YL0 - SULSO - GREMLIN Contacts

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Q97YL0 - Ring oxydation complex/ phenylacetic acid degradation related protein

UniProt:	Q97YL0	Sequences: MQKLRSVKEVPQDLTNTLVNIIELRADFELAMVEQYSPWLVNAPTVDSRLFVAKLVSDELNHGWQLVRLLEEFKVKDVIERISNARLGIHKLEVSNLPLFNWEDVIAFTFLVDGAGLYQLKILKDCSFEPLSTLASSMIKEEESHIFFSQNELRNYQNKNRMQGAINFWFPRAVEMLHMTWSLNETHLRDLNISDLTKNDLINGYIKTTNEELKKCGYNEVNYDKALHYNVVLK	Download Alignment We filter this alignment to remove sites that have many gaps before running GREMLIN. Date: 2015_01
Length:	234 (206)
Sequences:	1333 (715)
Seq/√Len:	49.8

ECOLI - PAAA PAAC
SULSO - Q97YL0 Q97WU5 Q97YL1 Q97WU6

GREMLIN Results:

Legend: The darker and larger the blue dots, the higher coevolution strength.

Residue pairs sorted by coevolution strength:

i	j	Sco	Prob
163_Q	167_N	3.733	1.00
26_A	67_V	3.566	1.00
77_D	80_E	3.251	1.00
24_L	180_T	2.983	1.00
79_I	82_I	2.896	1.00
78_V	81_R	2.773	1.00
17_T	187_H	2.740	1.00
92_L	176_M	2.611	1.00
81_R	85_A	2.569	1.00
48_S	148_F	2.552	1.00
33_V	60_L	2.535	1.00
79_I	83_S	2.506	1.00
163_Q	219_N	2.503	1.00
34_E	37_S	2.477	1.00
111_L	166_I	2.455	1.00
82_I	85_A	2.389	1.00
107_A	162_M	2.371	1.00
97_L	172_R	2.258	1.00
81_R	86_R	2.213	1.00
79_I	85_A	2.180	1.00
159_K	217_G	2.176	1.00
82_I	86_R	2.134	1.00
83_S	86_R	2.123	1.00
188_L	194_S	2.121	1.00
103_E	165_A	2.067	1.00
159_K	163_Q	2.027	1.00
78_V	82_I	2.010	1.00
78_V	85_A	2.005	1.00
153_L	162_M	1.965	0.99
78_V	83_S	1.956	0.99
110_F	153_L	1.903	0.99
85_A	89_I	1.856	0.99
173_A	205_Y	1.836	0.99
114_G	146_I	1.822	0.99
66_L	131_L	1.822	0.99
179_M	197_T	1.820	0.99
77_D	83_S	1.752	0.99
69_L	130_P	1.667	0.98
19_V	73_F	1.639	0.98
66_L	120_L	1.635	0.98
79_I	86_R	1.608	0.98
101_N	161_R	1.605	0.98
210_N	220_E	1.579	0.97
106_I	153_L	1.535	0.97
76_K	83_S	1.481	0.96
20_N	90_H	1.471	0.96
69_L	128_F	1.451	0.96
120_L	142_E	1.443	0.96
160_N	164_G	1.404	0.95
107_A	166_I	1.383	0.95
202_I	206_I	1.381	0.94
101_N	104_D	1.357	0.94
186_T	190_D	1.353	0.94
76_K	82_I	1.340	0.94
104_D	168_F	1.337	0.93
113_D	116_G	1.332	0.93
179_M	199_N	1.311	0.93
78_V	86_R	1.306	0.93
129_E	133_T	1.281	0.92
163_Q	217_G	1.273	0.92
22_I	73_F	1.271	0.92
43_A	102_W	1.265	0.91
79_I	89_I	1.260	0.91
157_Q	162_M	1.250	0.91
86_R	89_I	1.249	0.91
197_T	200_D	1.242	0.91
110_F	212_E	1.233	0.90
35_Q	38_P	1.223	0.90
210_N	214_K	1.197	0.89
80_E	83_S	1.191	0.89
118_Y	208_T	1.190	0.89
110_F	149_S	1.188	0.89
185_E	188_L	1.180	0.88
120_L	148_F	1.179	0.88
81_R	84_N	1.179	0.88
163_Q	213_L	1.177	0.88
77_D	81_R	1.175	0.88
181_W	186_T	1.170	0.88
117_L	139_I	1.165	0.88
53_A	60_L	1.152	0.87
111_L	169_W	1.150	0.87
65_Q	134_L	1.138	0.86
110_F	209_T	1.130	0.86
71_E	77_D	1.130	0.86
82_I	87_L	1.109	0.85
116_G	142_E	1.108	0.85
206_I	210_N	1.102	0.84
76_K	79_I	1.093	0.84
122_I	204_G	1.093	0.84
82_I	89_I	1.090	0.84
77_D	82_I	1.089	0.84
79_I	84_N	1.086	0.84
79_I	88_G	1.073	0.83
211_E	215_K	1.072	0.83
76_K	86_R	1.071	0.83
32_M	108_F	1.058	0.82
157_Q	216_C	1.051	0.82
114_G	118_Y	1.026	0.80
59_E	142_E	1.017	0.79
95_S	112_V	1.006	0.79
72_E	130_P	1.005	0.79
24_L	184_N	1.000	0.78
18_L	188_L	0.996	0.78
150_Q	212_E	0.996	0.78
202_I	205_Y	0.993	0.78
174_V	202_I	0.987	0.77
139_I	143_E	0.982	0.77
203_N	206_I	0.975	0.76
170_F	221_V	0.966	0.76
147_F	151_N	0.959	0.75
107_A	153_L	0.959	0.75
157_Q	163_Q	0.954	0.75
122_I	200_D	0.952	0.75
79_I	87_L	0.951	0.75
69_L	72_E	0.939	0.74
32_M	109_T	0.935	0.73
64_W	78_V	0.929	0.73
116_G	120_L	0.929	0.73
199_N	203_N	0.922	0.72
114_G	208_T	0.911	0.71
18_L	22_I	0.902	0.71
113_D	120_L	0.898	0.70
206_I	220_E	0.891	0.70
180_T	184_N	0.890	0.70
66_L	116_G	0.888	0.69
75_V	80_E	0.880	0.69
162_M	217_G	0.876	0.68
107_A	165_A	0.874	0.68
94_V	112_V	0.873	0.68
162_M	218_Y	0.868	0.68
150_Q	208_T	0.863	0.67
113_D	149_S	0.863	0.67
150_Q	154_R	0.861	0.67
113_D	148_F	0.854	0.66
153_L	212_E	0.848	0.66
117_L	121_K	0.844	0.65
137_S	144_S	0.843	0.65
78_V	89_I	0.836	0.65
80_E	84_N	0.836	0.65
29_E	142_E	0.830	0.64
152_E	155_N	0.824	0.64
67_V	81_R	0.818	0.63
83_S	87_L	0.811	0.62
164_G	167_N	0.807	0.62
59_E	116_G	0.805	0.62
205_Y	209_T	0.803	0.62
31_A	98_P	0.802	0.61
59_E	113_D	0.802	0.61
166_I	213_L	0.796	0.61
105_V	109_T	0.795	0.61
97_L	168_F	0.794	0.61
106_I	152_E	0.788	0.60
28_F	116_G	0.787	0.60
125_D	190_D	0.776	0.59
37_S	53_A	0.774	0.59
92_L	112_V	0.774	0.59
71_E	76_K	0.773	0.59
28_F	92_L	0.773	0.59
58_D	165_A	0.764	0.58
186_T	197_T	0.763	0.58
41_V	49_R	0.761	0.57
55_L	148_F	0.754	0.57
91_K	96_N	0.752	0.57
83_S	89_I	0.747	0.56
199_N	202_I	0.746	0.56
35_Q	47_D	0.745	0.56
121_K	124_K	0.742	0.55
164_G	168_F	0.740	0.55
184_N	187_H	0.739	0.55
130_P	133_T	0.736	0.55
115_A	119_Q	0.735	0.55
111_L	209_T	0.734	0.55
117_L	208_T	0.732	0.54
77_D	86_R	0.731	0.54
49_R	53_A	0.730	0.54
76_K	85_A	0.730	0.54
71_E	78_V	0.730	0.54
28_F	188_L	0.726	0.54
20_N	184_N	0.726	0.54
85_A	88_G	0.721	0.53
61_N	141_E	0.717	0.53
117_L	143_E	0.715	0.53
76_K	81_R	0.714	0.53
121_K	207_K	0.713	0.53
100_F	105_V	0.707	0.52
78_V	87_L	0.703	0.52
78_V	84_N	0.693	0.51
58_D	137_S	0.691	0.50
77_D	85_A	0.688	0.50
167_N	213_L	0.685	0.50
146_I	208_T	0.684	0.50
118_Y	204_G	0.680	0.49
23_E	75_V	0.678	0.49
64_W	68_R	0.673	0.48
220_E	223_Y	0.670	0.48
37_S	56_V	0.669	0.48
101_N	165_A	0.667	0.48
81_R	89_I	0.666	0.48
89_I	222_N	0.664	0.48
160_N	207_K	0.663	0.47
62_H	128_F	0.663	0.47
97_L	104_D	0.660	0.47
68_R	71_E	0.659	0.47
94_V	213_L	0.659	0.47
187_H	190_D	0.655	0.47
27_D	35_Q	0.652	0.46
146_I	150_Q	0.652	0.46
179_M	200_D	0.651	0.46
168_F	171_P	0.643	0.45
99_L	104_D	0.642	0.45
207_K	210_N	0.641	0.45
39_W	100_F	0.635	0.45
66_L	148_F	0.635	0.45
54_K	57_S	0.634	0.44
64_W	133_T	0.633	0.44
76_K	80_E	0.631	0.44
80_E	86_R	0.630	0.44
115_A	143_E	0.630	0.44
212_E	216_C	0.630	0.44
103_E	156_Y	0.626	0.44
200_D	203_N	0.625	0.44
191_L	222_N	0.623	0.43
34_E	84_N	0.623	0.43
24_L	185_E	0.622	0.43
116_G	148_F	0.622	0.43
68_R	166_I	0.617	0.43
80_E	89_I	0.616	0.43
148_F	152_E	0.615	0.43
102_W	156_Y	0.613	0.42
113_D	193_I	0.612	0.42
66_L	113_D	0.602	0.41
125_D	214_K	0.600	0.41
102_W	128_F	0.599	0.41
45_T	102_W	0.594	0.40
128_F	138_M	0.593	0.40
134_L	138_M	0.593	0.40
118_Y	201_L	0.593	0.40
157_Q	218_Y	0.586	0.40
83_S	88_G	0.586	0.40
59_E	62_H	0.584	0.40
58_D	144_S	0.583	0.39
92_L	205_Y	0.582	0.39
154_R	215_K	0.581	0.39
179_M	198_K	0.580	0.39
93_E	109_T	0.578	0.39
73_F	128_F	0.577	0.39
166_I	211_E	0.577	0.39
109_T	113_D	0.574	0.39
148_F	151_N	0.573	0.38
43_A	59_E	0.571	0.38
167_N	222_N	0.570	0.38
111_L	173_A	0.570	0.38
61_N	144_S	0.566	0.38
19_V	22_I	0.566	0.38
28_F	101_N	0.565	0.38
76_K	87_L	0.561	0.37
157_Q	217_G	0.559	0.37
82_I	88_G	0.559	0.37
18_L	73_F	0.558	0.37
189_R	197_T	0.557	0.37
22_I	130_P	0.554	0.37
36_Y	102_W	0.552	0.36
179_M	186_T	0.552	0.36
29_E	116_G	0.548	0.36
29_E	62_H	0.547	0.36
57_S	61_N	0.547	0.36
154_R	216_C	0.544	0.36
167_N	219_N	0.543	0.36
77_D	87_L	0.542	0.35
73_F	191_L	0.542	0.35
99_L	105_V	0.541	0.35
36_Y	60_L	0.541	0.35
45_T	148_F	0.541	0.35
167_N	181_W	0.538	0.35
156_Y	162_M	0.537	0.35
43_A	53_A	0.536	0.35
16_N	20_N	0.533	0.35
158_N	161_R	0.532	0.35
67_V	170_F	0.532	0.35
166_I	218_Y	0.532	0.35
188_L	193_I	0.531	0.34
22_I	69_L	0.531	0.34
208_T	211_E	0.528	0.34
165_A	169_W	0.527	0.34
36_Y	56_V	0.525	0.34
177_L	202_I	0.525	0.34
104_D	169_W	0.523	0.34
136_S	139_I	0.523	0.34
134_L	137_S	0.522	0.34
174_V	178_H	0.520	0.33
213_L	220_E	0.519	0.33
81_R	88_G	0.518	0.33
55_L	131_L	0.518	0.33
125_D	210_N	0.517	0.33
162_M	165_A	0.515	0.33
37_S	105_V	0.514	0.33
104_D	165_A	0.513	0.33
191_L	196_L	0.513	0.33
51_F	156_Y	0.513	0.33
20_N	24_L	0.511	0.33
74_K	157_Q	0.510	0.33
54_K	137_S	0.507	0.32
95_S	157_Q	0.505	0.32
198_K	203_N	0.505	0.32
213_L	217_G	0.504	0.32
109_T	149_S	0.502	0.32
124_K	136_S	0.501	0.32
54_K	141_E	0.500	0.32
62_H	102_W	0.500	0.32

Legend: The i and j are positions as given in the UniProt sequence. Only predictions with Prob ≥ 0.7 are listed. For all 3L/2 predictions, click on one of the links below.

Sco = ((raw_sco - min_sco)/(avg_sco - min_sco))/2 + 0.5
Prob = P(contact | Sco, seq80/√len)
seq80 = effective number of sequences, after reducing redundancy to 80% identity

Text file of predictions (all 3L/2 predictions)
Generate restraints for ROSETTA Structure Modeling
Upload PDB model overlay contacts on the model

HHsearch Results:

Legend: GREMLIN results (Prob ≥ 0.7) overlaid on top PDB hits. The grey/red filled circles underneath are pdb residue contacts (min distance < 5 Angstroms). The shade of the circles is based on the top 10 (or top 20 if e-value < 1E-20) HHsearch results which uses the overall probability and per-site alignment prob. Inter oligomeric contacts in the pdb are in shades of red.

PDB	Chains	Cov	%	HHΔ
1otkA	2	0.9316	100	0.181	Contact Map
3pf7A	1	1	100	0.203	Contact Map
3pvtA	1	0.9957	100	0.227	Contact Map
4mudA	2	0.9487	100	0.252	Contact Map
2incA	2	0.9701	98.5	0.86	Contact Map
3ge3A	2	0.9786	98.5	0.861	Contact Map
1mtyB	2	0.9402	98.2	0.871	Contact Map
1mtyD	2	0.9786	98.1	0.875	Contact Map
3ez0A	2	0.8846	98.1	0.876	Contact Map
1mhyB	2	0.9744	98	0.878	Contact Map

Sequence Conservation (Image Generated using WebLogo v3)

Legend: Color is used to show Hydrophobicity (Blue: Hydrophilic, Green: Neutral and Black: Hydrophobic). Amount of gaps is represented by width.

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